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LOCUS XM_070219296 2739 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_070219296 VERSION XM_070219296.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2739 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2739 /gene="Rip11" /note="Rab11 interacting protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108069860" CDS 86..2557 /gene="Rip11" /codon_start=1 /product="rab11 family-interacting protein 1 isoform X1" /protein_id="XP_070075397.1" /db_xref="GeneID:108069860" /translation="MNEMFGSVTHFMIWITEALGCDSMQRARGLLTKGKNGTNNCFVT IALGKEKYQTSVKDKAETSVNWNEECELKIPDQGNRAELTLTCLHRNNLGIDEFLGQA SLPLNEMDVYDRPRAKWFKLESKPGKEKKNKERGELEVRIAFVVKSGSLTDLSKKDKH KSSIGQLASSVGGSLLSIGNGEKRRSIKKLAGSLSSKLHIRSKKKHQEGGADDSSSFG GSFASLGTPNSSNGRGQNGGGGSGRRRGGQRAGEADPGVISEDEDEFVFDNLSHKSSG SSLNIQRTGLQPPAALGTAPNFAPRHPSPLLSNGGGVAGGGSGKGKPAILPVTLDEDD APIDADMEQLELDFSVRAHARSSNSSSTLPPPSKPPRIPLEQEQPVAESLEREKPKEK PREKPKEVESDKDEWASKLYGGGKYLEIGSSDSLKRRSWEDRVPLPASVEEPPPMPTS SSSSSSSEDSDEDEDEQPPQTAPPPVPVPAPAAAPAPVAATSSSLFSPEVEHRNFDTF NASFAKYEQRNSTAIFADEPELDDLTAELEKPVPTPTARPKPQPRATADLRAEEEEAA RQQRAEEDARLEAELRLNEERLREEEAAMQREMEEERERERRKQLQLDEQQRREAKRW EEDQRLLSFAKRSTSLEEPVASTEKEETEPAEVEATEPEHNFLTPEQSPKEFQTNGSG GGEHWEKRLGKFKYGNKRDKYNNDNESNSPSPKSTERIIIGHEKSGSHAERRSEISAQ LAKKYEGKSREELMLIANGMENEALLQRQRVKELEDYLDNLLLRVMETHPKILQNPYS RTTSAKRYATWSFWSRSTPTPTTTH" misc_feature 152..514 /gene="Rip11" /note="C2 domain; Region: C2; cl14603" /db_xref="CDD:472691" misc_feature 2330..2473 /gene="Rip11" /note="FIP domain; Region: RBD-FIP; pfam09457" /db_xref="CDD:462805" polyA_site 2739 /gene="Rip11" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcatacatgt tttttgggtg ttttttcggg tgagactttt aatcaccaga gtttagtgta 61 cagaattaat cagaaatcag taaaaatgaa cgaaatgttt ggtagcgtta ctcactttat 121 gatctggata acggaagcct tgggctgtga ttcaatgcag cgagcgcggg ggctgctaac 181 caagggcaag aatggcacca acaactgctt cgtcacgatt gccttgggca aggagaagta 241 ccagacgtcg gtcaaggaca aggccgagac gagcgtcaat tggaacgagg agtgcgagct 301 caaaatcccc gatcagggca accgcgccga gctcactttg acctgcctgc accgcaacaa 361 tctgggcatc gatgagttcc tcggccaggc ctcgctgccc ctcaacgaga tggacgtcta 421 cgatcgtccg cgcgccaaat ggttcaagct ggagagcaag ccgggcaagg agaagaagaa 481 caaggagcgc ggcgagctgg aggtgcgcat cgccttcgtc gtgaagtccg gttcgctgac 541 cgatctcagc aagaaggaca agcacaagtc ttccattggc cagctggcca gctccgttgg 601 cggcagcctg ctgtccatcg gcaatggcga gaagcggcgc agcatcaaga agctggccgg 661 atcgctgagc tccaagctgc acatacgcag caagaagaag catcaggagg gaggagcgga 721 tgatagcagc tcctttggcg gctcctttgc cagcctgggc accccaaata gctcgaatgg 781 ccggggacag aacggcggcg gcggcagtgg acgacgacgt ggcggccagc gggcgggcga 841 ggccgatccc ggcgtgatta gcgaggatga ggatgagttt gtcttcgata atctgtcgca 901 caagagttcg ggtagctcgc tgaacatcca acgcaccggt ttgcagcccc cggcggcgtt 961 aggaacggcg cctaactttg cgccgcgcca tccatcgcct ctgctgagca atggaggagg 1021 agtagcaggc ggcggcagcg ggaaaggtaa gccagcgatt ttgccagtga cgctcgatga 1081 ggatgatgcg cccatcgacg cggatatgga acagcttgag ctcgatttca gtgtacgtgc 1141 ccacgcccgc agcagcaaca gcagcagcac cctgccgcca ccctcgaagc cgccgcgcat 1201 tcccctggag caggagcagc cggtggctga aagtctggag cgggagaagc caaaggagaa 1261 gccaagggag aagcccaagg aggtggagag cgacaaagac gagtgggcct cgaagttgta 1321 tggcggtggc aagtacctgg agatcggtag cagtgactcc ttgaagcgac gcagctggga 1381 ggatcgagtg ccgctgcctg ccagcgtcga ggagccgccg ccaatgccca cgtccagttc 1441 gtcgtccagt tccagcgagg atagcgacga ggatgaggat gagcagccac cgcagacagc 1501 tccgccacca gtacccgtgc ctgctcctgc tgctgctcct gctccagtgg cagccacctc 1561 ctcctcgctc ttctcccccg aagtggagca ccgcaacttt gacaccttca acgccagctt 1621 cgccaagtac gagcagcgca acagcaccgc catctttgcc gatgagcccg agttggatga 1681 tttgacggcg gagctggaga agccagtgcc cacgcctaca gctcgtccca agccacagcc 1741 gcgagctacg gctgatttga gggctgagga ggaggaggct gcgaggcagc agcgcgccga 1801 ggaggatgcc cgcctggagg cggagctgcg gctgaatgag gagcggctgc gcgaggagga 1861 ggcggccatg cagcgggaga tggaggagga gagggagagg gagcgacgaa agcaattgca 1921 gctggacgag cagcagaggc gcgaggcgaa gcgctgggag gaggaccaaa gactgctgag 1981 cttcgccaag cgatccactt ccctcgagga gccggtagcc agtacagaga aggaggagac 2041 ggagccagca gaggttgaag cgacagagcc ggagcacaat ttcctaacgc ccgagcagtc 2101 gcccaaggag ttccagacga acggcagcgg cggcggggag cactgggaaa agcggctggg 2161 caagttcaaa tacggcaaca agcgagataa atacaacaac gacaatgaga gcaactcgcc 2221 tagtcccaag tccacggagc gcataattat tggtcacgag aagtcgggct cgcatgcgga 2281 gcgacgctcg gagatatccg cccagctggc caagaaatac gagggcaagt cccgggagga 2341 actaatgcta attgccaacg gaatggagaa cgaggctctg ctgcagcgac agcgcgtcaa 2401 ggagctggag gactacctgg acaacctgct gctgcgcgtg atggagacgc atccgaagat 2461 cttgcagaat ccctattcgc gcaccacgtc cgccaagagg tacgccacct ggtcgttctg 2521 gtctcgctcc acgcccacgc ccaccaccac ccactaacca atcaaccaac caaatcaaac 2581 caactgcatg acctttgacc gccggtagga ttgttgatac ccgatagagc cacccttgcg 2641 atctaaattc ggtgtcgcgc actggatgga aattattttg atatctatat tttgtataca 2701 tgatgtgtgt tcactccaaa tcgccataaa tatgaacaa