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PREDICTED: Drosophila takahashii shaggy (sgg), transcript variant


LOCUS       XM_070219292            4176 bp    mRNA    linear   INV 09-DEC-2024
            X9, mRNA.
ACCESSION   XM_070219292
VERSION     XM_070219292.1
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4176
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..4176
                     /gene="sgg"
                     /note="shaggy; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins"
                     /db_xref="GeneID:108063823"
     CDS             368..1849
                     /gene="sgg"
                     /codon_start=1
                     /product="protein kinase shaggy isoform X4"
                     /protein_id="XP_070075393.1"
                     /db_xref="GeneID:108063823"
                     /translation="MRKLEHCNIVKLLYFFYSSGEKRDEVFLNLVLEYIPETVYKVAR
                     QYAKTKQTIPINFIRLYMYQLFRSLAYIHSLGICHRDIKPQNLLLDPETAVLKLCDFG
                     SAKQLLHGEPNVSYICSRYYRAPELIFGAINYTTKIDVWSAGCVLAELLLGQPIFPGD
                     SGVDQLVEVIKVLGTPTREQIREMNPNYTEFKFPQIKSHPWQKVFRIRTPTEAINLVS
                     LLLEYTPSARITPLKACAHPFFDELRMEGNHTLPNGREMPPLFNFTEHELSIQPSLVP
                     QLLPKHLQNASGPGGANRSSAGGAASAAASGSTSVSSTGSGASAEGSAAQQPQAQGTA
                     AAAAAGSGSGSGSGSGGAAAAGGSGSGNNSSGGGASGAPSAAVAAGANAAVAGGGGGG
                     GVGAAATAATAAGAMAATNAGGANVTGSQSNSALNSSGSGGSGNGSGNGNGNGEAAVS
                     ASGSGGNGGNGGNGGDNDAGDSGAAGSGGSGGGAAETEAAASG"
     misc_feature    368..1096
                     /gene="sgg"
                     /note="The catalytic domain of the Serine/Threonine
                     Kinase, Glycogen Synthase Kinase 3; Region: STKc_GSK3;
                     cd14137"
                     /db_xref="CDD:271039"
     misc_feature    order(485..487,608..610,614..616,674..676,707..709,
                     713..724,728..730,842..844)
                     /gene="sgg"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271039"
     misc_feature    order(662..694,698..730)
                     /gene="sgg"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271039"
     misc_feature    order(701..727,749..754,845..859,863..868,878..880,
                     938..949)
                     /gene="sgg"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:271039"
     misc_feature    order(749..751,854..859,863..868,875..880,938..955)
                     /gene="sgg"
                     /note="axin binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:271039"
     polyA_site      4176
                     /gene="sgg"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agacgagtcg cgggaaacag taaacatatc gacccagaag aaggcagcca aacagagcac
       61 cacccgcgat gtaaaactca agggacccgc ccccgagggc cccgcgaaac agccgacgga
      121 taagcatctg gaccgccagt ttgtccagtc agtgaatagt cgcgatggtt ctaaaatcac
      181 aacagttgtt gcaacacccg gccaaggcac cgatcgcgta caagaggtct cctatacaga
      241 cacaaaggtc atcggcaatg gcagcttcgg cgtcgtgttc caggcaaagc tctgcgatac
      301 cggcgagctg gtggcaatca aaaaagtttt acaagacaga cgatttaaga atcgcgaatt
      361 gcaaattatg cgcaaattgg agcattgtaa tattgtaaag cttttgtact ttttctattc
      421 gagcggtgaa aagcgtgatg aagtattttt gaatttagtc ctcgaatata taccagaaac
      481 cgtatacaaa gtggctcgcc aatatgccaa aaccaagcaa acgataccaa tcaactttat
      541 tcggctctac atgtatcaac tgtttagaag tttggcctac atccactcgc tgggcatttg
      601 ccatcgtgat atcaagccgc agaaccttct gctcgatcct gagacggctg tgctgaagct
      661 ctgtgacttt ggcagtgcca agcagctgct gcacggcgag ccgaacgtgt cgtatatctg
      721 ctcccggtat taccgcgccc ccgagctcat ctttggcgcc atcaattata caacaaagat
      781 cgacgtatgg agtgccggtt gcgttttggc cgagctactg ctgggccagc ccatcttccc
      841 tggcgactcc ggtgtcgatc agcttgtcga ggtcatcaag gtcctgggca caccgacaag
      901 agaacagata cgcgagatga atccaaacta cacggaattc aagttcccac aaattaagag
      961 tcatccatgg cagaaagttt tccgtatacg cactcctaca gaagctatca acttggtgtc
     1021 cctgctgctc gagtacacgc ccagtgcccg gatcacaccg ctcaaggcct gtgcacatcc
     1081 gttcttcgac gagctgcgca tggagggcaa ccacaccttg cccaacggtc gcgagatgcc
     1141 gccgctattc aacttcacag agcatgaact ctcgatacag cccagcctag tgccacaatt
     1201 gttgcccaag catctgcaga atgcctccgg cccaggcggc gccaaccgat cctcagccgg
     1261 cggagcagcc tctgctgcgg ccagcggctc caccagcgtc tcgtccacag gcagtggcgc
     1321 ctcggcggaa ggatccgccg cccagcagcc gcaggcgcag ggcacagcag cagcagcagc
     1381 tgcgggatcc ggatcgggat cgggatcggg atcaggcgga gcagcagcag ccggcggatc
     1441 aggatccggc aacaacagca gcggaggcgg agcatccgga gcgccgtctg ccgccgtggc
     1501 agctggtgcc aatgccgcgg tagccggcgg aggcggcggt ggcggagtcg gtgcggcggc
     1561 cactgctgcc acagcagctg gcgctatggc cgcgaccaat gccggcggcg ccaatgtgac
     1621 aggttctcag tcgaacagcg ccctcaacag cagcggaagt ggcggcagtg gaaatggcag
     1681 cggaaacgga aatggaaacg gagaggcagc tgtctcggca tcgggatcgg gtggaaacgg
     1741 tggaaatgga ggaaacggcg gggacaacga cgctggcgac agtggagctg caggatccgg
     1801 aggatctgga ggaggagcag ctgagaccga ggcagcggcg tcgggttagc gcgagtcagg
     1861 aggtgctctc ttttaatgta atgttattca caggattttc gcttgggcca gggattaagt
     1921 taccattacc atttttggcc cagacccaca cacacacaca cagttacact cgatggaaac
     1981 agaagagata gaatgagaag agaagtccca gcaaaagcta agagaaaatg atagacaaag
     2041 gaattcaaat tctgattcag attcactcca caaaacacca cccacccaat acactcacac
     2101 ccactcacac accccagctc cagcacacac acacatgtat gtatgtatat ctagctatat
     2161 gcattgggcg caagcaaata tttagcataa aactcgaaag aaagaaaaaa caaaagaatc
     2221 cactttaaac tatgcataaa taatttaaat aataatctgt attattgaca cgggacaagc
     2281 ccgtaaggat gttgaaaaat aataatcggt aaaagaaaaa gaaaaacccc cctccaatat
     2341 agaaaataac atttaacaaa tagctcgcga aacgtaataa aacttaagtc aaagatgaga
     2401 aatggaaaac aaaccacaag agaaatgagg aaatacttag tgaaataaat caaaattttt
     2461 gccccattta acgtttatat atatgcgatt atacaaatat ataacgatca cagcagttag
     2521 caatccatag taaaagtaaa aatgagaaac aaaaacaaaa ataaaaataa aaggcggcaa
     2581 agtgagaact agcaaaaagg agatgatata acatttacta aactcgcgca agtgcatcta
     2641 tataaatacg atatatagat attatataaa catagatata tatacgagat attaaagaga
     2701 cattcgtaat cctagtagca acccccgatc ccccaatccc gaccccaatg aaccggaaaa
     2761 tgccgaggta tttccgtgca acattttccg tggcctgttc tcaagtgacg acgtttagga
     2821 actacgatta tctaaggagg cggtcgtcga aatgcaatat acactaacac taaacactat
     2881 acataaatac atgaatacaa aggttataac aaattgagca aaacgtaaat gaatgtgtaa
     2941 tgaatgagta aaacgctttt agcgcgcgac gccacccatt aacttaaatt aacaatgcaa
     3001 ataatacata atacaagagg taatgagtaa tgagacgatg atgatgagat agtaaagcct
     3061 aaagccagga tcttgatata tgtaaaagta atcgacaaag aacaaacaac atttagctgc
     3121 aattgaaaat ttaaacttat ttaatacaaa ttgaagtaaa cgtaaacgta aaagtaaaag
     3181 taaaatacaa tgaaaccgaa accgaaaccg atgatggttt tagaatgtaa ggccttagat
     3241 caaccggaaa ctcctgcgcg actatagtac tacccctcgc cctctccctc gcctcggttc
     3301 gattggttcg aatctctatc tctataccta tgaaacccaa aaacccaaaa accgaaaacc
     3361 caaaaaccac ccacttaaac tgcttagatc tcgttttgat tatgcgatct gcgattatgt
     3421 ccaagcactt taagcccatt aaaactaaaa ccaactaagt aaacaaagga aaacataaag
     3481 aaaaccaaaa agaaaaagga aagcaagtct atttgtatgt atttccatag aactccttat
     3541 atattatatg agaacatatt tttttttact aactaaatga tacatttata caattaatga
     3601 acgttgagtt ttgtggcatc aaaactaaat aaatttaact atatacatat atgtacacac
     3661 ccacacacaa gaacacacac taacattcag acattttcac acgcacatag ctctataatt
     3721 tcaagtaaat ttttaaaacc caagattacc caactaattt ccccaaaaca ttttggtaaa
     3781 taatctaaga aggcggcaaa caagttatat aaacccaaac ccccaaaaga caccccacac
     3841 acacgcgatg tttgatttgt aattaaaaat ttgaacagaa gaatggaaaa ataaagccca
     3901 aaacaatata tatacacaca tatatatgca tagaaaaaca tacttatata tgatgaacaa
     3961 cttcagcgtt tcgctttaat tatgaggcaa caaccacatg agaaatccaa accaaactta
     4021 aacttaatta acttaaacac aaacctaaac taattgcaaa aataacaaat ggcaaaacca
     4081 aattgaaaga ggaagtgaaa atgaaaataa aacacgagac aaatgcgtaa agaaaacatt
     4141 aatttaaaaa caataaaaat tacaaacaaa aatata