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LOCUS XM_070219282 3015 bp mRNA linear INV 09-DEC-2024 (Trf4-1), transcript variant X4, mRNA. ACCESSION XM_070219282 VERSION XM_070219282.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3015 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3015 /gene="Trf4-1" /note="Topoisomerase related function 4-1; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108054412" CDS 427..2769 /gene="Trf4-1" /codon_start=1 /product="non-canonical poly(A) RNA polymerase protein Trf4-1 isoform X2" /protein_id="XP_070075383.1" /db_xref="GeneID:108054412" /translation="MDPFVGWFQKEQEGPSLRTWLKIWETNAQEMGALLDQQLQQATT TNGSSSSSNNNSSSNNNNNSTTNNIGNNLTGKPYLSRPNSSLNRLLNFRGDSVENGTT QRNSSAADSTTNRDNSSPTNSSSTNGPGTAGGSGGGGGSGSNSPANTAAATTTTGPPA TSNSSSSNSMSDTSNNPPQTTTTTTTTPAASRTNNSIYYNPSRKKRPENKAGGGGHYY MNNHMEMIAKYKGEPWRKPDYPYGEGVIGLHEEIEHFYQYVLPTPCEHAIRNEVVKRI EAVVHSIWPQAVVEIFGSFRTGLFLPTSDIDLVVLGLWEKLPLRTLEFELVSRGIAEA CTVRVLDKASVPIIKLTDRETQVKVDISFNMQSGVQSAELIKKFKRDYPVLGKLVLVL KQFLLLRDLNEVFTGGISSYSLILMCISFLQMHPRGIYHDTANLGVLLLEFFELYGRR FNYMKIGISIKNGGRYMPKDELQRDMVDGHRPSLLCIEDPLTPGNDIGRSSYGVFQVQ QAFKCAYRVLALAVSPLNLLGIDPRVNSILGRIIHITDDVIDYREWIRENFEHLVVVD RISPLPTAPAAYAASNGAPKYVIMPSGAVVQQLYHHPQQVQVQTTAHGGHSHSHHGHL HPLGQPFVTGTAAASGATTTTSSTTVALVGGVAISAGGGVQQQQQLQQQLQQQQQNAT NAHSHAQSQQSQQNQSQSRHRRGSTSSGDDSEDSKDCDVVETTTLTGGQEVIDITLSP PNGLGSSMPVQPSNWSAGGNGNINSSSSSSVMHTIPRLDT" misc_feature 1168..2205 /gene="Trf4-1" /note="DNA polymerase sigma [Replication, recombination and repair]; Region: TRF4; COG5260" /db_xref="CDD:227585" ORIGIN 1 cacatccaat tttaggacct tttcctccat tagtcgcgtg ttcgcacaca aattgcaatt 61 ttgctgtcgt ttttaaacta actaaagtta acgggcgttg caaagggaca atcgcggtgg 121 aggagtgcaa tctgcacagg aaatgcaagc ttgcattgcg aggcgcagcc attgcttatg 181 attaatttcg ctcttgaatg ctgaaaaact gaaagagttg aaggcccaag acgataactc 241 cattcccctg tggaacacac agcccacaga tctctaccga tccatataga gaaacatcta 301 tataatatat catattataa taaacgcagg acgcaagggg gaagagagac gaaggaagga 361 cgaagcgaag gaggacgcgc ccctctcgtt tcccgcccag ccaacagccg tgtgaaagcg 421 tcttgaatgg atccatttgt tggctggttt cagaaggaac aggagggacc atcgctgcgc 481 acatggttaa agatttggga gacgaatgcc caggagatgg gcgcattgct tgatcaacag 541 ctacagcagg cgacgacgac caacggcagc agcagcagca gcaacaataa tagcagtagc 601 aacaacaaca acaattctac taccaataat attggtaaca atttaacggg caagccctat 661 ttatcgcgac ccaacagctc gctaaatcga ttgctgaatt tccgcggcga ttctgtagag 721 aacggaacca ctcagcggaa cagttcagcg gctgattcca ccacaaatcg ggataacagc 781 tcacccacca acagcagttc aaccaacgga cccggaacag caggaggatc aggaggagga 841 ggaggaagcg gatccaatag tccggccaac acagctgctg ccaccacaac gactgggcca 901 ccagccacta gcaacagcag cagcagcaac agcatgagtg acactagcaa caacccgcca 961 cagacaacga caacgacaac aaccacgccc gccgccagtc gcacgaacaa cagcatctac 1021 tacaatccgt cgcggaagaa acggcccgag aacaaagcag gcggcggtgg gcattactat 1081 atgaacaacc acatggagat gatagccaaa tacaagggtg aaccgtggcg caagccagac 1141 tatccgtatg gcgagggcgt tattgggctg cacgaggaga tcgagcactt ctatcagtat 1201 gtcctgccca cgccctgcga acatgccatt cggaacgagg tggtcaagcg catcgaggcc 1261 gttgtccatt ccatctggcc acaggcggtg gtcgagatct ttggttcctt tcgcaccggc 1321 ctctttttgc ccacctccga cattgatctc gttgtgctag gtttgtggga gaaactgccg 1381 ctgcgcacgc tggaattcga gctagtgagc cgcggcatcg ccgaggcctg cacagttcgt 1441 gtcctggaca aggcatccgt gcccatcatc aagctgacgg atagggagac gcaagtgaag 1501 gtagacatat cgttcaacat gcagagcggc gttcagtcgg cggagctaat taagaagttc 1561 aagcgcgact atccggtgct ggggaagctg gtgctggtgc tcaagcagtt cctgctgctg 1621 cgcgatctca acgaggtgtt caccggcggc atctcgtcct actcgctgat cctcatgtgc 1681 atcagcttcc tgcagatgca tccgcgtggc atttaccacg ataccgccaa tctgggtgtg 1741 ctgctcctcg agttctttga gctttacggc cgtcgtttca actacatgaa gattgggatc 1801 tcgatcaaga acggcggacg gtatatgccc aaggatgagc tgcagcgcga catggtcgac 1861 ggccatcggc catcgcttct ctgcatcgag gatccgctga cgccgggcaa cgatatcgga 1921 cgcagcagct acggggtctt tcaggtgcag caggccttca agtgcgccta ccgcgtcctc 1981 gccctcgccg ttagtccgct caacctcctc ggcatcgatc cacgggtcaa ttccatactg 2041 ggtcgaatca tccacatcac cgacgacgta atcgactacc gcgaatggat ccgcgagaac 2101 ttcgagcatc tggtggtggt ggaccgcatc tcgccgctgc ccaccgcacc cgctgcgtac 2161 gccgcctcga atggggcgcc caaatatgtg atcatgccct cgggcgccgt tgtccagcag 2221 ctgtaccacc atccgcagca ggtgcaggtg caaaccacag cccacggagg gcatagccat 2281 agccatcacg gccatttgca tccgcttggc cagccgtttg tcaccggaac agctgctgca 2341 tctggggcga caacgacgac gtcgtcgacg acggtggcgt tggttggcgg agtggccatc 2401 tcagccggcg gaggagtcca acagcagcag cagctgcagc aacagcttca gcagcagcaa 2461 cagaatgcca cgaatgccca ttcccatgcg cagtcgcagc agtcgcagca gaaccaatcg 2521 cagtcgcgtc acagacgtgg cagcacctcc tctggcgatg attccgagga cagcaaagac 2581 tgcgatgtgg tcgagacgac gacgttgacg ggcggacagg aggtcatcga tatcacgctg 2641 tcgccgccga atggcctcgg ctcctccatg ccggtgcagc cgagcaattg gagtgccggt 2701 ggcaatggaa acatcaacag cagctcatcc tcgtcggtaa tgcacacaat cccccgcctt 2761 gacacatgat gactggtggt ggccggctgc ctaatgccca ggcatcaggt ggtcggctat 2821 gctcccatgc tggccgcagt tgagtccccc cggttgtatt tgaaaccgaa accgaaaccg 2881 aacccgaaac aagcacaaac aaaatttctg catcatccaa agaccttggg aacggcaact 2941 gcagccagca tgacgagaag catgaacagc agcagcagta gaaacaagaa cacatgtata 3001 acctcttcac cacca