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LOCUS XM_070219264 6937 bp mRNA linear INV 09-DEC-2024 (Adar), transcript variant X9, mRNA. ACCESSION XM_070219264 VERSION XM_070219264.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6937 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6937 /gene="Adar" /note="Adenosine deaminase acting on RNA; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108063839" CDS 47..2014 /gene="Adar" /codon_start=1 /product="double-stranded RNA-specific editase Adar isoform X2" /protein_id="XP_070075365.1" /db_xref="GeneID:108063839" /translation="MNGYNRKSPQKRRYEMPKYAVSPKKKTCKERIPQPKNTVAMLNE LRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQGRSKKVARIEAAATALRSFIQFK DGAVLSPLKPSGNLDFTSDEHLENGIENLSNKQLVEIIEPLMLTEKKSNLTSLEQPTL RLQMFCMSQNVSKSAITVDGQKKVPDKGPVMLLYELFNDVNFECINIDGAQNNCRFKM TVTINEKKFDGTGPSKKLAKNAAAKAALASLCNISYSPMVVPQKNVPLPIDDKSSSME LPQIHADTIGRLVLEKFMEVIKGQEAYSRRKVLAGIVMTENMNFCEAKVISVSTGTKC VSGEHMSVNGAVLNDSHAEIVSRRCLLKFLYAQLDLQCNQATAYQSIFVRNTDGQYPY KLKSGVHFHLYINTAPCGDARIFSPHENDTGVDKHPNRKARGQLRTKIESGEGTIPVK SSDGIQTWDGVLQGQRLLTMSCSDKIARWNIVGIQGSLLSSIIEPVYLHSIVLGSLLH PEHMYRAVCGRIEKSIQGLPPPYHLNKPRLALVTSAEPRNQAKAPNFGINWTIGDTEL EVVNSLTGRTIGGQVSRITKQAFFVKYGFLMTNLPGILVRKVTTDYGQTKANVKDYQI AKLELFSAFKREDLGSWLKKPIEQDEFGLAE" misc_feature 152..340 /gene="Adar" /note="first double-stranded RNA binding motif of STRBP, ILF3, RED1, RED2 and similar proteins; Region: DSRM_STRBP_RED-like_rpt1; cd19865" /db_xref="CDD:380694" misc_feature order(152..154,161..166,173..178,182..184,224..229, 233..235,239..241,290..298,305..307) /gene="Adar" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380694" misc_feature 605..>745 /gene="Adar" /note="double-stranded RNA binding motif (DSRM) superfamily; Region: DSRM_SF; cl00054" /db_xref="CDD:444671" misc_feature 884..1999 /gene="Adar" /note="tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase); Region: ADEAMc; smart00552" /db_xref="CDD:214718" polyA_site 6937 /gene="Adar" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttacaaaacg tgttaaaagc cggtgagtgc accatctgat atcaacatga acggatataa 61 ccggaagtcg cctcaaaaac ggcgctatga gatgccaaaa tatgctgtat caccaaaaaa 121 gaaaacctgc aaggagcgca ttccgcagcc aaagaatacg gtggcaatgc tgaatgagtt 181 aagacatgga ctgatttaca aattggagtc acagactggt ccggtgcacg cacctttatt 241 tacgatatcc gttgaggtcg atggacagaa atacttgggc cagggtcgca gtaaaaaagt 301 tgcacgcatc gaggcagctg ccacagcact gcgaagcttt atacaattca aggacggagc 361 cgtcttgtcg ccattgaagc catcgggcaa cttggacttt accagcgatg aacatctaga 421 aaatggtatt gaaaatttgt ccaacaaaca attggtcgag atcattgagc cgttgatgtt 481 gactgaaaag aaatccaacc ttacctcgct tgaacaaccc acgttgcgtc ttcaaatgtt 541 ttgcatgagt cagaatgtca gcaagagtgc catcactgtt gacggtcaaa agaaggttcc 601 ggacaagggt cccgtaatgc tgctctacga attgttcaac gatgttaatt ttgaatgcat 661 taatattgac ggagctcaaa acaattgtcg cttcaagatg accgtcacga ttaacgaaaa 721 gaagttcgat ggaacaggtc cttccaaaaa gctggcgaaa aatgctgcgg ccaaagcggc 781 acttgcctcg ttgtgcaaca tttcctacag tccaatggtg gtgccacaaa agaacgtacc 841 ccttccaatc gacgacaagt cgtcatccat ggagttgccg cagatacatg ccgatacgat 901 tggacgcctg gttttggaga agttcatgga agtaatcaag ggccaggagg cctactcgcg 961 tcgaaaggta ttggcgggca ttgttatgac tgaaaacatg aatttttgtg aagccaaagt 1021 tatttcagtc tcgacgggca ccaagtgtgt cagcggcgag catatgagtg tgaacggagc 1081 tgtcctgaac gattcccatg ccgaaatagt gtctaggcgt tgtctcctca agttcttgta 1141 tgcacagctg gatcttcagt gcaatcaggc cacagcatat cagtcgattt tcgtgaggaa 1201 tactgatggg caataccctt ataaactaaa atccggggta catttccatt tgtatataaa 1261 tacagcacct tgtggggatg cacggatatt tagtcctcac gaaaacgaca ctggtgttga 1321 taaacatcca aatagaaaag ctcgcggcca gttgcgtaca aaaatcgagt ccggtgaggg 1381 gacgattcca gtcaaaagca gtgatggaat acagacgtgg gatggcgtgc tgcagggcca 1441 acgcttgctg acaatgtcgt gctcggacaa aattgcacga tggaacatcg tgggtataca 1501 aggctccttg ttgtcttcca taattgaacc agtgtacctg cattcgattg tgctgggcag 1561 tttgctgcac ccagagcaca tgtaccgtgc agtgtgcggc cggatcgaaa agtccattca 1621 aggtctgccg ccgccgtatc atttgaataa gccccggctc gcattggtca cttcggccga 1681 gccgcggaat caggccaagg ctccaaactt tggtatcaat tggaccattg gagataccga 1741 gttggaagtg gtgaactcgc ttactggtcg aacaatcggc ggtcaagtgt ctcgcatcac 1801 gaaacaggcg ttttttgtta aatatggatt tttaatgaca aacttaccag gtattttagt 1861 ccgcaaagta accacagact acgggcaaac caaagctaac gtaaaggact atcagatcgc 1921 aaagctagaa ttgttttcgg cattcaaacg tgaagacctt ggcagctggc tgaagaaacc 1981 cattgaacaa gacgagttcg gtcttgccga atgactgcac tcagcactat tatataattt 2041 aaaaaaagac aacagtaacg gcaagcaatt aatagaatta gatgacatag attttatgac 2101 aaactcttat gtagaatgca aattaagttg ggtgcaaaga catcgatatg aaattcatac 2161 gattgagaac ctgccaacat tgcgtaccca ttgcaacagc aagcacaaag atgcttatgc 2221 tcgaaatatg aaaaaaggct ctagaatatt tatagaatag aatgtagttt ttatgctgga 2281 actgagtaaa ggagtattat ggcgtttttt tttgaatcaa ttcattttca aattggttaa 2341 ggcaatctct ttcgcatcta agtttgccac acgtttcatt ttttaaatcg aaataaaacg 2401 atttcgcccc aaccacactg ttataatttt caagtgagtt gggttgttta agtgcccata 2461 ttttacaaaa atgtggtaat aaataatgtt gcaagacagg taaaacaaga agggaagccc 2521 ttgcagatcg ttcctatggc agctgtatga aatagcactc cagagtttct gtattatatt 2581 gtttttcctt tattttccga tcgttcatat aatagtcatc cattttttct tttaatttaa 2641 ctcgttattc taaaatattt ttaatattcc ctaaaaagaa gaaataatgt ttaaaaacaa 2701 cgaatttata atttttctct attaattttc cgttttgatg tccctctgca agggtaaaaa 2761 actataaaac caacaagtaa aatctataaa taacaataac caaaacagaa atctctagac 2821 tttgttctgt tatcgattaa gcaatgtatt ttgttaagta atgttatttg caacgacata 2881 ataattataa taaagtcacg cttactataa gcataacgta aactttaggt gaatctacat 2941 tatttccaca tatttttctt cagatcatat atacacctaa gctttcatcg attttcaata 3001 aataaaactg tgttctcggt tgaaaaactt taaatataaa aacattttat caatttaatt 3061 atgtagattt ttttaaaaat tagttgaaat cacatgcaaa tgaaaaggat ataaatagat 3121 tagttaaaaa ttttatagca tgataaagac attttaaata cctaagtcta ataatgaagc 3181 ttgtaacgcc attttgtata atgtagacga catattgtat tagttgtaca cttgtacatc 3241 ataatatttt ctattaaaaa cttacttctt cctgatttct tccaattggc ttatttctgg 3301 ttgttcgatc aattaaaaat ggcaattgta aatggtcaag aatcatgctg aaatacaaaa 3361 gtatttactt tttaatgatt gctcttccaa cgtgacctga agtattcgta ttcaatataa 3421 ggcgatttgg ccctttcttt tcaattgtac atggaaatgg tacgattaat aaactagtca 3481 gatgtggtat tctcattatc tttaaaaatt gagtcatgta aaataagtat tacgtcgaag 3541 ttgcataaaa cacgaaaaag aaaaggactg caagacgtta gagcagaaca gcttatttcg 3601 tgcactcagt tgtaattttt ccgaatcgac ttgacaacaa caaaaataca tacgacttca 3661 aaaaagttaa aataccgttt tgttatgata taatttctca agaaaacccg tttgtttatt 3721 ttcgtactag aacacttcag cttatctcgt gcaacgactt gtagaatagc cgaaattatt 3781 ttaattgttt tgtttttttt actaagtttg taactttatt attaacttgt aaaacgctaa 3841 aatgttgaca aataaatttt agaaatttaa tacatttatg taccaaaatg caaaaataaa 3901 atgttttaac aacaatgaat ataaattaat ttcactttaa tttctgaaat attattcctt 3961 aaatacctgt attgggtaat tccttatttt ccaaaaaata attattttat gaaaatttga 4021 tctttgttta atagtaaatc taaaattagt aatttcttat tattattttc aaggcctgat 4081 aaatgtcaat ttttaaatgt ctgtacgaaa taagctctgg aaatgtaata taccttacgg 4141 gataccaact tctgttacaa tattataatg aacggggctt tttacatgtg aaattataag 4201 ctaagaaaac attgcttgcg attttcaata tgttttgtat ttttgaagtt atgccgatat 4261 caaaaaatga aattatatat tttttctttt agtttttttc gccgcatgct aaaaataaat 4321 tggcagagta tgagtattcg taaaagagaa tacacagctt gtgagatttt ctccattact 4381 tgattatata ataatatata ccattctaat atgacgatat aattgactta agtaatattt 4441 gcaaaaaata ccgcatatga tggataaaca aaagttgatc ttatataaaa tactgtgata 4501 ctaaatttta ctagtacttc cagcatagct gcattttatc cattcttaaa tattctatga 4561 taagcagcag cagataataa tcaatgacta tataggaaaa caaaaaattt ttaaatgaca 4621 tggctcaatg cttgtctaca ttagattttc aaataagaaa ttttacaata tatatattaa 4681 tacgtatgaa aaggtgggta taacattggg attccttaaa tatcatttta aattgcaatg 4741 caaaacaata ggccctatga tgcaagcata aatagatgat ctttagtcaa ctaactttta 4801 ttgctgcaac ataacaaaag tacagaaaac tggagaacaa aaatatactg gaacatatat 4861 taaattaaaa tcaataatat gtaggttaga tgcgtcggtt tattcaagac ccagctaaga 4921 aaagtttaat atttattaaa acaattatct aagaaagctg ataaaactat gagacatttt 4981 tttaatttaa attagtttgg ggaaaagtaa atatttacaa tagtatgcta gtcattaaac 5041 gagtattcta ctcttgttat ggaatggctt tgattcttca catattaagt tgatttgcct 5101 aataattcgt atacatatta ttttaaatta taattgagaa ctgtttgcga aaaagaaata 5161 gaaataccac agttttaaat ggatattaat tgtacttgca agcttgactt acaataatat 5221 agataagaag tatacaaagc aaaaggttgc tcaaattgca aagcttttgg aaagtatttc 5281 tctctcttcc ggacaaaagt gtagtcctgc aaacatacat aagtagatgc ttatagaaca 5341 catcgggcta tattgtaacc cgttaaaaca gtgataagaa gatgcgttga gacccgtacc 5401 actatgatgt agaccaaaac gaggcaaaga aatgttatta aaaccgtata gcaggaagat 5461 aaactaatca accagtacta catacatatg tacgttgtca gcaatccaac aaagatgttt 5521 ggattagtcg cataggacaa ttacattatt tgaaattgta cgaatattta agacaactaa 5581 tgtcaaactt gggttaactt atattcttta gaatctaaac atgggcaaca tcgaaggtga 5641 acacttacta ttgatttgta gttttaaaat gttgaaagac tataaccaaa tgaattatct 5701 aagacacaac cggcaaaacc tagtgccgtt cagagaaagg gatgcacata aaaatatgac 5761 aaatctgctt tcatttatat ttttaaactt cacggcatct ttaaatatca tctctgagat 5821 tacagaatat atacttactc attaacttct tattctgact acaaatgata taaaagacaa 5881 aacacttaat atctaaatat acagaacaaa cttgaattta aaaactaggt ttacacgttc 5941 caattcgaac acttgaactt cacttatcca catttcatca agtttaccaa gacaatttac 6001 atgacgattc attgaagtac caaagtatca aacaatataa tcggaaaatt aaaaatactg 6061 ttaaatcgat tatctgtttt tcgaaaaaga atccacattt tcatttaagc atccacacat 6121 ttttttgatt ccaccgaaat tttttaattt ttaaggataa gtgggtttat aaaagtctta 6181 agcaaatgca gacatccaaa aatcgaatcg cttctttagt tttgaaaaca gtatatgcat 6241 aacataatat ataaaaatac acacttatac gtaaatcttt gttcttgatc aaaagttagt 6301 gcaaatatcc aaacgaataa agcagaataa taaacactta atatctaaat aaacagaaca 6361 aactttaatt aaaagaaatt aggtttacac tacgtacact aaaacttcgc ttatctaaat 6421 ttcaataagt acgtttagat aaacaaaaca ttaagatacc aaagtagtaa caatctagtc 6481 ggaaaatgag aaatcatatt taaatgcagt ttatgttgcg acaaattaaa tactttttta 6541 ggcattgatt gctttcttgg ttcttcaaaa tgtgtaattt tggaggacaa gtgggttcaa 6601 gaaggtcaca atcgaatgca gacatcaaaa aatatgacat tactttaaac atttagtttt 6661 aaaacaaacc cgaatgtacc atgaaatcag tatatgcata gcttaatata tacaaaatac 6721 acacttatac gtaaaatttt gttcttcatc aaaatttagt gcaaatagcc agacgattaa 6781 aatagaataa tagcaagcaa caacaacagt gttggcggct acattaaaac aaatgtatca 6841 atactttaaa aattttaaaa tagatcttac gatggccttt ttattttata atcgactgtc 6901 agccaataaa atgatcccca cgtcattaaa gccgaaa