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LOCUS XM_070219262 7497 bp mRNA linear INV 09-DEC-2024 (Adar), transcript variant X4, mRNA. ACCESSION XM_070219262 VERSION XM_070219262.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7497 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7497 /gene="Adar" /note="Adenosine deaminase acting on RNA; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:108063839" CDS 544..2574 /gene="Adar" /codon_start=1 /product="double-stranded RNA-specific editase Adar isoform X1" /protein_id="XP_070075363.1" /db_xref="GeneID:108063839" /translation="MLNSANNNSPQHPVSAPSDINMNGYNRKSPQKRRYEMPKYAVSP KKKTCKERIPQPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQGR SKKVARIEAAATALRSFIQFKDGAVLSPLKPSGNLDFTSDEHLENGIENLSNKQLVEI IEPLMLTEKKSNLTSLEQPTLRLQMFCMSQNVSKSAITVDGQKKVPDKGPVMLLYELF NDVNFECINIDGAQNNCRFKMTVTINEKKFDGTGPSKKLAKNAAAKAALASLCNISYS PMVVPQKNVPLPIDDKSSSMELPQIHADTIGRLVLEKFMEVIKGQEAYSRRKVLAGIV MTENMNFCEAKVISVSTGTKCVSGEHMSVNGAVLNDSHAEIVSRRCLLKFLYAQLDLQ CNQATAYQSIFVRNTDGQYPYKLKSGVHFHLYINTAPCGDARIFSPHENDTGVDKHPN RKARGQLRTKIESGEGTIPVKSSDGIQTWDGVLQGQRLLTMSCSDKIARWNIVGIQGS LLSSIIEPVYLHSIVLGSLLHPEHMYRAVCGRIEKSIQGLPPPYHLNKPRLALVTSAE PRNQAKAPNFGINWTIGDTELEVVNSLTGRTIGGQVSRITKQAFFVKYGFLMTNLPGI LVRKVTTDYGQTKANVKDYQIAKLELFSAFKREDLGSWLKKPIEQDEFGLAE" misc_feature 712..900 /gene="Adar" /note="first double-stranded RNA binding motif of STRBP, ILF3, RED1, RED2 and similar proteins; Region: DSRM_STRBP_RED-like_rpt1; cd19865" /db_xref="CDD:380694" misc_feature order(712..714,721..726,733..738,742..744,784..789, 793..795,799..801,850..858,865..867) /gene="Adar" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380694" misc_feature 1165..>1305 /gene="Adar" /note="double-stranded RNA binding motif (DSRM) superfamily; Region: DSRM_SF; cl00054" /db_xref="CDD:444671" misc_feature 1444..2559 /gene="Adar" /note="tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase); Region: ADEAMc; smart00552" /db_xref="CDD:214718" polyA_site 7497 /gene="Adar" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcgcttccc cacctctaca gaactctaac cgacgaagtg tcattgtttt tttttctaat 61 gtaatggact taaatctttg cattcgaatc gagtgaatcc gggactgcag tctccccccc 121 gaacaccaaa cacccaatcg aattcgcggc cagaggagcg gatagagagc accgaggata 181 gaggaaacgc ttaaaattga tttgtttgtc cggccatgtc agtgtgtgtg tgacaagggc 241 tcgtccgtgt gcgtgcgcct gtcgctgtgt gtgtgtgctc tctttttttt cttcctatcg 301 agtgccgcta aattgaataa ttgcagtaag agccaccaat ataaatatat gtatatccta 361 cccccctctc ctacaaagga acagtaaaaa taagagcaag aggaagaaca ctaactagcg 421 ttaaacaaat gaaactctgc cgatacagcg aagtaaaaat caataattag agctcgttcg 481 caagcgaaaa agcacaacag atttcaccaa gatataaagt gcgtgaaatt cgattccaga 541 gtcatgttaa acagcgcaaa taacaattct ccccagcacc cggtgagtgc accatctgat 601 atcaacatga acggatataa ccggaagtcg cctcaaaaac ggcgctatga gatgccaaaa 661 tatgctgtat caccaaaaaa gaaaacctgc aaggagcgca ttccgcagcc aaagaatacg 721 gtggcaatgc tgaatgagtt aagacatgga ctgatttaca aattggagtc acagactggt 781 ccggtgcacg cacctttatt tacgatatcc gttgaggtcg atggacagaa atacttgggc 841 cagggtcgca gtaaaaaagt tgcacgcatc gaggcagctg ccacagcact gcgaagcttt 901 atacaattca aggacggagc cgtcttgtcg ccattgaagc catcgggcaa cttggacttt 961 accagcgatg aacatctaga aaatggtatt gaaaatttgt ccaacaaaca attggtcgag 1021 atcattgagc cgttgatgtt gactgaaaag aaatccaacc ttacctcgct tgaacaaccc 1081 acgttgcgtc ttcaaatgtt ttgcatgagt cagaatgtca gcaagagtgc catcactgtt 1141 gacggtcaaa agaaggttcc ggacaagggt cccgtaatgc tgctctacga attgttcaac 1201 gatgttaatt ttgaatgcat taatattgac ggagctcaaa acaattgtcg cttcaagatg 1261 accgtcacga ttaacgaaaa gaagttcgat ggaacaggtc cttccaaaaa gctggcgaaa 1321 aatgctgcgg ccaaagcggc acttgcctcg ttgtgcaaca tttcctacag tccaatggtg 1381 gtgccacaaa agaacgtacc ccttccaatc gacgacaagt cgtcatccat ggagttgccg 1441 cagatacatg ccgatacgat tggacgcctg gttttggaga agttcatgga agtaatcaag 1501 ggccaggagg cctactcgcg tcgaaaggta ttggcgggca ttgttatgac tgaaaacatg 1561 aatttttgtg aagccaaagt tatttcagtc tcgacgggca ccaagtgtgt cagcggcgag 1621 catatgagtg tgaacggagc tgtcctgaac gattcccatg ccgaaatagt gtctaggcgt 1681 tgtctcctca agttcttgta tgcacagctg gatcttcagt gcaatcaggc cacagcatat 1741 cagtcgattt tcgtgaggaa tactgatggg caataccctt ataaactaaa atccggggta 1801 catttccatt tgtatataaa tacagcacct tgtggggatg cacggatatt tagtcctcac 1861 gaaaacgaca ctggtgttga taaacatcca aatagaaaag ctcgcggcca gttgcgtaca 1921 aaaatcgagt ccggtgaggg gacgattcca gtcaaaagca gtgatggaat acagacgtgg 1981 gatggcgtgc tgcagggcca acgcttgctg acaatgtcgt gctcggacaa aattgcacga 2041 tggaacatcg tgggtataca aggctccttg ttgtcttcca taattgaacc agtgtacctg 2101 cattcgattg tgctgggcag tttgctgcac ccagagcaca tgtaccgtgc agtgtgcggc 2161 cggatcgaaa agtccattca aggtctgccg ccgccgtatc atttgaataa gccccggctc 2221 gcattggtca cttcggccga gccgcggaat caggccaagg ctccaaactt tggtatcaat 2281 tggaccattg gagataccga gttggaagtg gtgaactcgc ttactggtcg aacaatcggc 2341 ggtcaagtgt ctcgcatcac gaaacaggcg ttttttgtta aatatggatt tttaatgaca 2401 aacttaccag gtattttagt ccgcaaagta accacagact acgggcaaac caaagctaac 2461 gtaaaggact atcagatcgc aaagctagaa ttgttttcgg cattcaaacg tgaagacctt 2521 ggcagctggc tgaagaaacc cattgaacaa gacgagttcg gtcttgccga atgactgcac 2581 tcagcactat tatataattt aaaaaaagac aacagtaacg gcaagcaatt aatagaatta 2641 gatgacatag attttatgac aaactcttat gtagaatgca aattaagttg ggtgcaaaga 2701 catcgatatg aaattcatac gattgagaac ctgccaacat tgcgtaccca ttgcaacagc 2761 aagcacaaag atgcttatgc tcgaaatatg aaaaaaggct ctagaatatt tatagaatag 2821 aatgtagttt ttatgctgga actgagtaaa ggagtattat ggcgtttttt tttgaatcaa 2881 ttcattttca aattggttaa ggcaatctct ttcgcatcta agtttgccac acgtttcatt 2941 ttttaaatcg aaataaaacg atttcgcccc aaccacactg ttataatttt caagtgagtt 3001 gggttgttta agtgcccata ttttacaaaa atgtggtaat aaataatgtt gcaagacagg 3061 taaaacaaga agggaagccc ttgcagatcg ttcctatggc agctgtatga aatagcactc 3121 cagagtttct gtattatatt gtttttcctt tattttccga tcgttcatat aatagtcatc 3181 cattttttct tttaatttaa ctcgttattc taaaatattt ttaatattcc ctaaaaagaa 3241 gaaataatgt ttaaaaacaa cgaatttata atttttctct attaattttc cgttttgatg 3301 tccctctgca agggtaaaaa actataaaac caacaagtaa aatctataaa taacaataac 3361 caaaacagaa atctctagac tttgttctgt tatcgattaa gcaatgtatt ttgttaagta 3421 atgttatttg caacgacata ataattataa taaagtcacg cttactataa gcataacgta 3481 aactttaggt gaatctacat tatttccaca tatttttctt cagatcatat atacacctaa 3541 gctttcatcg attttcaata aataaaactg tgttctcggt tgaaaaactt taaatataaa 3601 aacattttat caatttaatt atgtagattt ttttaaaaat tagttgaaat cacatgcaaa 3661 tgaaaaggat ataaatagat tagttaaaaa ttttatagca tgataaagac attttaaata 3721 cctaagtcta ataatgaagc ttgtaacgcc attttgtata atgtagacga catattgtat 3781 tagttgtaca cttgtacatc ataatatttt ctattaaaaa cttacttctt cctgatttct 3841 tccaattggc ttatttctgg ttgttcgatc aattaaaaat ggcaattgta aatggtcaag 3901 aatcatgctg aaatacaaaa gtatttactt tttaatgatt gctcttccaa cgtgacctga 3961 agtattcgta ttcaatataa ggcgatttgg ccctttcttt tcaattgtac atggaaatgg 4021 tacgattaat aaactagtca gatgtggtat tctcattatc tttaaaaatt gagtcatgta 4081 aaataagtat tacgtcgaag ttgcataaaa cacgaaaaag aaaaggactg caagacgtta 4141 gagcagaaca gcttatttcg tgcactcagt tgtaattttt ccgaatcgac ttgacaacaa 4201 caaaaataca tacgacttca aaaaagttaa aataccgttt tgttatgata taatttctca 4261 agaaaacccg tttgtttatt ttcgtactag aacacttcag cttatctcgt gcaacgactt 4321 gtagaatagc cgaaattatt ttaattgttt tgtttttttt actaagtttg taactttatt 4381 attaacttgt aaaacgctaa aatgttgaca aataaatttt agaaatttaa tacatttatg 4441 taccaaaatg caaaaataaa atgttttaac aacaatgaat ataaattaat ttcactttaa 4501 tttctgaaat attattcctt aaatacctgt attgggtaat tccttatttt ccaaaaaata 4561 attattttat gaaaatttga tctttgttta atagtaaatc taaaattagt aatttcttat 4621 tattattttc aaggcctgat aaatgtcaat ttttaaatgt ctgtacgaaa taagctctgg 4681 aaatgtaata taccttacgg gataccaact tctgttacaa tattataatg aacggggctt 4741 tttacatgtg aaattataag ctaagaaaac attgcttgcg attttcaata tgttttgtat 4801 ttttgaagtt atgccgatat caaaaaatga aattatatat tttttctttt agtttttttc 4861 gccgcatgct aaaaataaat tggcagagta tgagtattcg taaaagagaa tacacagctt 4921 gtgagatttt ctccattact tgattatata ataatatata ccattctaat atgacgatat 4981 aattgactta agtaatattt gcaaaaaata ccgcatatga tggataaaca aaagttgatc 5041 ttatataaaa tactgtgata ctaaatttta ctagtacttc cagcatagct gcattttatc 5101 cattcttaaa tattctatga taagcagcag cagataataa tcaatgacta tataggaaaa 5161 caaaaaattt ttaaatgaca tggctcaatg cttgtctaca ttagattttc aaataagaaa 5221 ttttacaata tatatattaa tacgtatgaa aaggtgggta taacattggg attccttaaa 5281 tatcatttta aattgcaatg caaaacaata ggccctatga tgcaagcata aatagatgat 5341 ctttagtcaa ctaactttta ttgctgcaac ataacaaaag tacagaaaac tggagaacaa 5401 aaatatactg gaacatatat taaattaaaa tcaataatat gtaggttaga tgcgtcggtt 5461 tattcaagac ccagctaaga aaagtttaat atttattaaa acaattatct aagaaagctg 5521 ataaaactat gagacatttt tttaatttaa attagtttgg ggaaaagtaa atatttacaa 5581 tagtatgcta gtcattaaac gagtattcta ctcttgttat ggaatggctt tgattcttca 5641 catattaagt tgatttgcct aataattcgt atacatatta ttttaaatta taattgagaa 5701 ctgtttgcga aaaagaaata gaaataccac agttttaaat ggatattaat tgtacttgca 5761 agcttgactt acaataatat agataagaag tatacaaagc aaaaggttgc tcaaattgca 5821 aagcttttgg aaagtatttc tctctcttcc ggacaaaagt gtagtcctgc aaacatacat 5881 aagtagatgc ttatagaaca catcgggcta tattgtaacc cgttaaaaca gtgataagaa 5941 gatgcgttga gacccgtacc actatgatgt agaccaaaac gaggcaaaga aatgttatta 6001 aaaccgtata gcaggaagat aaactaatca accagtacta catacatatg tacgttgtca 6061 gcaatccaac aaagatgttt ggattagtcg cataggacaa ttacattatt tgaaattgta 6121 cgaatattta agacaactaa tgtcaaactt gggttaactt atattcttta gaatctaaac 6181 atgggcaaca tcgaaggtga acacttacta ttgatttgta gttttaaaat gttgaaagac 6241 tataaccaaa tgaattatct aagacacaac cggcaaaacc tagtgccgtt cagagaaagg 6301 gatgcacata aaaatatgac aaatctgctt tcatttatat ttttaaactt cacggcatct 6361 ttaaatatca tctctgagat tacagaatat atacttactc attaacttct tattctgact 6421 acaaatgata taaaagacaa aacacttaat atctaaatat acagaacaaa cttgaattta 6481 aaaactaggt ttacacgttc caattcgaac acttgaactt cacttatcca catttcatca 6541 agtttaccaa gacaatttac atgacgattc attgaagtac caaagtatca aacaatataa 6601 tcggaaaatt aaaaatactg ttaaatcgat tatctgtttt tcgaaaaaga atccacattt 6661 tcatttaagc atccacacat ttttttgatt ccaccgaaat tttttaattt ttaaggataa 6721 gtgggtttat aaaagtctta agcaaatgca gacatccaaa aatcgaatcg cttctttagt 6781 tttgaaaaca gtatatgcat aacataatat ataaaaatac acacttatac gtaaatcttt 6841 gttcttgatc aaaagttagt gcaaatatcc aaacgaataa agcagaataa taaacactta 6901 atatctaaat aaacagaaca aactttaatt aaaagaaatt aggtttacac tacgtacact 6961 aaaacttcgc ttatctaaat ttcaataagt acgtttagat aaacaaaaca ttaagatacc 7021 aaagtagtaa caatctagtc ggaaaatgag aaatcatatt taaatgcagt ttatgttgcg 7081 acaaattaaa tactttttta ggcattgatt gctttcttgg ttcttcaaaa tgtgtaattt 7141 tggaggacaa gtgggttcaa gaaggtcaca atcgaatgca gacatcaaaa aatatgacat 7201 tactttaaac atttagtttt aaaacaaacc cgaatgtacc atgaaatcag tatatgcata 7261 gcttaatata tacaaaatac acacttatac gtaaaatttt gttcttcatc aaaatttagt 7321 gcaaatagcc agacgattaa aatagaataa tagcaagcaa caacaacagt gttggcggct 7381 acattaaaac aaatgtatca atactttaaa aattttaaaa tagatcttac gatggccttt 7441 ttattttata atcgactgtc agccaataaa atgatcccca cgtcattaaa gccgaaa