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LOCUS XM_070219252 7118 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_070219252 VERSION XM_070219252.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7118 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7118 /gene="Ubr1" /note="Ubr1 ubiquitin ligase; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108062312" CDS 296..6004 /gene="Ubr1" /codon_start=1 /product="E3 ubiquitin-protein ligase UBR1 isoform X1" /protein_id="XP_070075353.1" /db_xref="GeneID:108062312" /translation="MDRYDMEDVVVAPPAECSSPLKEWRLKRQAGTLARSDFIEFFKR ESPKYFDYQTGGTETDTNALTRCRGVNYMMGGRHRVSQSDNLRIGVLFQLTHHHANLV PEIKRLQQSKQGPIRGSLKCMFKEALAKEEIIDVLVEFMLGDNPASALEKLRLEGNTA TVCGKVFKNGEPTYSCRECGVDPTCVLCVNCFKRSAHRFHKYKMSTSGGGGCCDCGDD EAWKKDHYCQLHLANRKNPLESKILTDAVLERAEICFGAILAFCVNYLEIEPNASLQC LDGNVEGGQVDGAQYCTVLYNDESHTFDQVIQTLTKIAKCKHKDAMEIVAAIDREGRA VVKCDTFKECNDLKTAIENQMIPATALLTNPRNNQSLRTSVLHIGAVACQQFALQLLG WFQEFLVRHYLFRKTFAELVQRKQEAFCIRHILEYDVKLWKTARTCWHRLLISGMLME YDNKMVLAQEFSRRYATIVEDFISDDHDHAFSIVSLSVQLFTVPSIAHHLIAHEGIFD KLLHTFYHVAIEKFIQNKTLHFSKNIASLTFFKRANYILYDLRYLLSLKPELLNNDLR SGFLEGCRALMRVLNVMQGMESITRQTGQHMDYEPEWECAFNLHIKLATTISQVIEWA AGDVKLLRKLYKMTVRALVSNSFIVGGEKTETRSVAGHVANCLMYDVSVKPVSIHLPL SRFYAGIYLHLGAHEMTYDSLQTETEALSIKLTPREIIEPVLCTHAMIAQVAAGMWRR NGYSLLHQLYFYRNVRCRVEMLDRDIVCLQIGASLMESNEFLIHVLNKFNLIAWAQAT YETMLAESPVDDEFMRQLSMIDEFLELLIVIIGERWMPGVSMVTEEDRLRKEIIQLLC TKSYSHSELSRALPDGNSGNSDNIFEDVINTVAVFKKPVGVESKGVYELKEHLFEEFN VYFYHYTKEDKSKAEELQRERRKAKKQLVCCPPPMLPQLTPAFTSMANILQCNVFLSI CTLVMERALDARSRSFTESHLQKILHLLGFAIQEELSEHYPFLSFYERSQHYGILEKL DDLARCPRLEAHRDFVVWTIKRYKELQAKQAPSDSQPSGSQQCSGGGGASEEQPLSSE EQARQEKEIRARLAAERRAKIMAQMQSAQKSFMKSNAEMFAASEKETSGSTGAMEWED IPAEGEEAAQDDGQEQEQGAVALRPTVVACLGPERKIYQGSEANFKCILCFENCAISR SGPPLVSSAFVQTSRVIFTTPNMRAGPSALHMSCCGHVMHHSCWQEYYSNEESKEQRR PHRNRVALSQAHNVEFHCPYCRTLSNTVLPVTEALPAFSPAPSASDSYLPLDSFVEIM RTLAADLGAMRDEEMCQFPSVAGILRKSGVVGDMAQFERSVQLIRDPPKLHANYSDVM AFLSKALLNARQSQQSHLKEQQGTSTGTATLDPDSIELVPLLWDTCSYTLQALEIYLF EVQKPLKAELPMRHQSCAINLVRACSRFAASRCNFELELGEIPLSPSLRLQAEYSARL LNEIFNQKGSSVLEWDCFRKLVPLQFGVLNLMTAESANQTVIPSGSMFDFYILQTMFL AQLTKAVLCFDVDREQAKRPGHAELTQLAYVEQLPARIRDNMVAFYRRYNIAARVLQA SKQKQLAEEQQKEGDQQQQQTTVVIPCEPHHLALLLEYVQRQMSSFLRCACLFYRCLT DIDFPDTFPTDQPDRFELMCQYLGLEPQLGVYFDMETVYATMMHSFASHPHIGREIEQ RGQPEEVRRCLQLEPCLRPLPRLKPLYDDYSDLINSVSDIFCPNNEREEMKTPTMCLI CGSILCGQSYCCQPELGKMSVGACTHHAHACGAEVGIFLRIRDCQVVYLGRGKGCFVQ PPYLDEYGETDQGLRRGNPLRLCQAAYSRIFLQWLGHGLHEEIARLNDNTNVAVTQWH HM" misc_feature 779..985 /gene="Ubr1" /note="UBR-box found in ubiquitin-protein ligases, E3-alpha-1 (UBR1), E3-alpha-2 (UBR2), and similar proteins; Region: UBR-box_UBR1_like; cd19672" /db_xref="CDD:439070" misc_feature order(782..784,821..823,830..832,857..859,866..868, 884..886,893..895,932..934,938..940,974..976,983..985) /gene="Ubr1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:439070" misc_feature 1163..1354 /gene="Ubr1" /note="ATP-dependent Clp protease adaptor protein ClpS; Region: ClpS; pfam02617" /db_xref="CDD:460621" misc_feature 3995..4171 /gene="Ubr1" /note="RING finger, H2 subclass, found in ubiquitin-protein ligase E3-alpha-1 (UBR1), E3-alpha-2 (UBR2), and similar proteins; Region: RING-H2_UBR1-like; cd16482" /db_xref="CDD:438145" misc_feature 4523..5929 /gene="Ubr1" /note="Proteolysis_6 C-terminal; Region: PRT6_C; pfam18995" /db_xref="CDD:465944" polyA_site 7118 /gene="Ubr1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caaactgcga cttgcttttg attcaactgt caggttttgt gaattttaca cagtagtaaa 61 tagaaattat tgggattttt catagcaaca tttaggcaaa taagtaacac aacaaatgca 121 acaacaacaa caagcacaac agcaagacca gcaacagcaa caacaacaag taccagaacc 181 acaggaataa caaggacaag gacacaacaa aacaagacac ccacgcgcgg aggccagaaa 241 gagacggcag cacaggagcc acagcgagtg cgagagagcg agagcgagag caacgatgga 301 tcgctacgac atggaggacg ttgtggtggc gccacctgca gagtgcagtt cgccgctcaa 361 ggagtggcgc ctcaagcgcc aggcgggcac actagcccgg tccgatttta tcgaattctt 421 taagcgcgag tcgcccaagt actttgatta ccagacgggc ggtacggaga cagataccaa 481 tgcgcttact cgctgtcgcg gggtgaacta tatgatgggc gggcgccatc gggtttcgca 541 atcggataac ctgcgcatcg gcgtgctctt ccagttgacc catcatcacg cgaacctggt 601 gccggagatc aagcggctgc agcagagcaa gcaaggtccg atccgtggct ccctcaagtg 661 catgttcaag gaggcgctgg ccaaggagga gatcatcgat gtcctggtcg agttcatgct 721 gggcgacaat cccgcctccg cactggagaa gctccggctg gagggcaaca cggccaccgt 781 ttgcggcaag gtcttcaaga acggtgagcc cacctacagt tgccgcgagt gcggcgtcga 841 tcccacctgc gtgctctgcg tcaattgctt caagcgctcg gcgcatcgct tccacaagta 901 caagatgtcc acctccggcg gcggcggttg ctgcgactgc ggcgacgacg aggcctggaa 961 gaaggatcac tactgtcagc tgcatctggc aaatcgcaag aatccgctgg agagcaagat 1021 cctaaccgac gccgtgctcg agcgcgccga gatctgcttt ggtgcgatcc tggccttctg 1081 cgtcaactac ctggagatcg agccgaacgc cagtctgcag tgcctcgacg ggaatgtcga 1141 aggcggccag gtggatgggg cgcagtactg cacggtgctc tacaacgacg agtcgcacac 1201 gttcgatcag gtcatccaga cgctgaccaa gatcgccaag tgcaagcaca aggacgccat 1261 ggagattgtg gcggcgatcg atcgcgaggg acgggcggtg gtcaagtgcg atacctttaa 1321 ggagtgcaac gacctgaaaa cagccatcga gaatcaaatg atcccggcga ccgcgctgct 1381 gacgaatccg cgcaacaacc agtcgctaag gacatcggtg ctgcacattg gggccgtggc 1441 ctgccagcag tttgccctgc agctgctcgg ctggttccag gagttcctgg tgcgccacta 1501 cctcttccgc aagaccttcg ccgagctggt gcagcgcaag caggaggcct tctgcatccg 1561 ccacatactc gagtacgacg tgaagctgtg gaagacggcg cgcacctgct ggcaccgcct 1621 cctcatctcc ggcatgctga tggagtacga caacaagatg gtgctggccc aggagttctc 1681 gcgtcgctac gccaccattg tcgaggactt tatcagcgac gatcacgacc atgccttctc 1741 gattgtctcg ctcagcgttc agctgttcac ggtgcccagc attgcccatc atctgatcgc 1801 ccacgagggc atcttcgaca agctgctgca caccttctac cacgtggcca tcgagaagtt 1861 catacagaac aagacgctgc actttagcaa gaacatcgcc agtttgacct tcttcaagcg 1921 ggccaactac atcctgtacg atctgcgcta tctgctcagt ttgaagccgg agctgctgaa 1981 caacgatctg cgcagcggat tcctagaagg ctgccgtgcg ctgatgcgcg tgctaaacgt 2041 tatgcagggc atggagtcga tcacgcggca gacgggccag cacatggact acgagccgga 2101 gtgggagtgc gccttcaatc tgcacatcaa gctggccacc accatttcgc aggtgatcga 2161 gtgggcggcc ggggatgtga agctgctgcg caagctgtac aagatgacgg tgcgagcgct 2221 ggtgagcaac agcttcattg tgggtggcga gaagaccgaa acgcgcagtg tcgctggcca 2281 tgtggccaac tgtttgatgt acgatgtgtc ggttaagccg gtatcgattc atttgccgct 2341 gtcgcgcttc tatgccggca tctatctgca tctgggcgcc cacgagatga cctacgacag 2401 cctgcagacc gaaacggagg cgctgagcat caagctgacg cccagggaga ttatcgagcc 2461 ggtgctgtgc acgcatgcga tgatcgccca ggtggccgcc ggaatgtggc gtcgcaatgg 2521 ctactcgctg ctgcaccagc tctacttcta tcgcaacgtt cgctgccgcg tcgagatgct 2581 ggacagggat attgtttgcc tgcaaattgg cgcctcgctg atggagagca acgagtttct 2641 gattcatgtg ctcaacaaat tcaatctgat tgcctgggcg caggccacgt acgaaacgat 2701 gctggccgag agtccggtgg acgatgagtt catgcgacag ctgtcgatga ttgacgagtt 2761 cctcgagctg ctgatcgtca tcatcggcga gcgttggatg ccgggcgtat cgatggtgac 2821 ggaggaggac cggctgcgca aggagatcat ccagctgctg tgcaccaaat cctattcgca 2881 ttcggagctg agtcgcgcgc tgccggacgg caatagcggg aatagcgaca acatattcga 2941 ggacgtcatc aacacggtgg ccgtcttcaa gaagcccgtg ggcgtcgagt ccaagggcgt 3001 ctacgagctg aaggagcatc tgttcgagga gttcaacgtg tacttctatc actacaccaa 3061 ggaggacaag tccaaggccg aggagctgca gcgggagcgg cgcaaggcca agaagcagct 3121 cgtctgctgc ccgccgccga tgctgccgca attgacgccg gcctttacat ccatggcgaa 3181 catactgcag tgcaacgtgt tcctcagcat ctgcactttg gtcatggaac gggccttgga 3241 cgcacgcagt cgctccttca ccgaatcgca tctccagaag atcctccacc tgctgggctt 3301 cgccatccag gaggagctga gcgagcacta tcccttcttg agcttctacg agcgctccca 3361 gcactacgga atcctcgaga agctggacga tctcgcccgc tgtcccaggt tggaggctca 3421 tcgcgacttt gtcgtgtgga ccatcaagcg gtacaaggag ctgcaggcca agcaggcgcc 3481 cagcgactcc cagcccagtg gctcccagca atgcagcggc ggcggcggag cctcggagga 3541 gcagccgctc agctccgagg agcaggcgcg ccaggagaag gagatacgcg cccgtttggc 3601 ggccgagcgg cgggccaaga tcatggctca gatgcagagt gcccagaagt cgttcatgaa 3661 gagcaatgcc gagatgtttg cggccagtga gaaggagaca agtggtagta cgggtgccat 3721 ggagtgggag gatatacccg ccgagggtga ggaggcggcg caggatgatg gacaggagca 3781 ggaacaggga gcggtggccc tcaggcccac ggtggtggcc tgtctggggc cggagcgcaa 3841 aatctaccag ggcagcgagg cgaacttcaa gtgcattttg tgcttcgaga actgcgccat 3901 cagccgcagc ggtccgccgt tggtcagctc cgcctttgtc cagacctcgc gggtgatctt 3961 caccacgcca aatatgcgcg cagggccgag cgccctgcac atgagctgct gcggccatgt 4021 gatgcaccac agctgctggc aggagtacta cagcaacgag gagtccaagg agcagcggcg 4081 tccgcaccgc aatcgcgtgg ccctcagcca ggcgcacaac gtcgagttcc actgtccgta 4141 ttgccggacg ctgagcaaca ccgtgctccc ggtgaccgag gcgctgcccg ccttctcgcc 4201 agctccctcg gccagcgata gctatctgcc gctggacagc ttcgtcgaga tcatgcgcac 4261 tttggccgcc gatttgggcg ccatgaggga cgaggagatg tgccagtttc ccagcgtcgc 4321 cggcattttg cgtaaatccg gcgtggttgg cgacatggcg cagttcgagc ggagcgttca 4381 gctcatccgg gatccgccca agctgcacgc caactacagc gatgtgatgg ccttcctcag 4441 caaggcgctg ctaaatgccc ggcagagcca gcagtcgcat ctgaaggagc agcaaggaac 4501 cagcactgga acagccaccc tagatcccga tagcatcgag ctggtgccgc tgctctggga 4561 cacatgcagc tacacgctgc aggcgctcga gatctatctg ttcgaggtgc agaagccgct 4621 gaaggccgaa ctccctatgc gccaccagag ctgcgccatc aatctggtgc gcgcctgctc 4681 ccgcttcgcc gcctcgcgct gcaactttga actggagctg ggcgagattc cgttgtcgcc 4741 gtcgctgcgc ctgcaggcgg agtactccgc ccggctgctg aacgagatct tcaaccagaa 4801 gggcagcagt gtgctcgagt gggactgctt ccgcaagctg gtgccgctgc agtttggcgt 4861 cctcaatctg atgaccgccg agagtgccaa ccaaaccgtc atacccagcg gcagcatgtt 4921 cgacttctac atcctgcaga ccatgttcct ggcccagctg accaaggcgg tcctctgctt 4981 cgatgtggac cgggagcagg ccaagcggcc aggccatgcc gagctcacgc aactggccta 5041 cgtggagcag ctgccggcca ggatccgtga caatatggtg gccttctatc gccgctacaa 5101 cattgcggcc agagtgctgc aggcgagcaa gcagaagcag ctggccgagg agcagcagaa 5161 ggaaggagat caacagcagc agcagacgac tgttgtcata ccctgcgaac cgcatcactt 5221 ggccctgctg ctcgagtacg tgcagcgtca gatgagctcc ttcctgcgct gcgcctgcct 5281 cttctaccgc tgcctcaccg acatcgactt cccggacacg tttcccactg accagccgga 5341 tcgcttcgag ctaatgtgcc agtatttggg cctcgagccc cagctgggcg tgtactttga 5401 catggagacg gtgtacgcca cgatgatgca ctcgttcgcc tcgcatccgc acattggacg 5461 cgaaatagag cagcgcggcc agccggagga ggtgcgtcgc tgcctccaac tggagccctg 5521 cctgcgaccg ctgccgcgtt tgaagccgct gtacgacgac tacagcgatc tgatcaacag 5581 cgtgtcggac atcttctgcc cgaacaacga gcgcgaggag atgaagacgc cgacaatgtg 5641 tctgatctgc ggctcgatcc tctgcggcca gtcgtactgc tgccagccgg agctgggcaa 5701 gatgtcggtg ggcgcgtgca cacatcatgc gcacgcctgc ggcgcggagg tgggtatctt 5761 cctgcgcatc cgcgactgcc aggtggtcta tctgggcagg ggcaagggct gcttcgtcca 5821 gccgccgtat ctcgatgagt acggcgaaac ggatcagggg ctgaggcgcg gcaatccgct 5881 gagactctgc caggcggcct acagcaggat cttcctgcag tggctcggcc atgggctgca 5941 cgaggagatc gcccggctga acgacaacac caatgtggcg gtgacgcagt ggcatcacat 6001 gtagtcctgc gcagacgatg atcatgatga cgattacagt tacgataaag gagcaggcgg 6061 cggcggcggc ggcagtcaat gtgattatta catactaaca ttaggagagc ctatttatac 6121 gtctaagcat tttactactt gtccgttttg gaagaagcgc ccactcatcc aacatcaaac 6181 atccaacacc atccacaaac cacgaacacg ccaccatcac caccaccaaa tcctgtccag 6241 cagcggcccc caatcgacaa ttgcaacgat tgtccaactt tcttcttatt aattaatatt 6301 aattcattaa aatattatta tgattttttt tttgaactaa ccttagaata cttgttgata 6361 gtttgagcgg ctcagcgccc tcctctagtt atatatatat atataatatc atatgctaaa 6421 tatataacga ctaggttaga cttttgccca gcacttcaaa tgtcgcagca gctgaaggaa 6481 gcaaagctac gttgaaataa aagcaacaaa atatgcaagt cctgctctct ctctatcttt 6541 tgtctcgctc gcgcggcccc actcgatgta tatatagtcc cgatctttga gtgccgatga 6601 tcctaaccat gttgaggtcc tatttttggc gtttgttgat ttgtacattt agttagtgta 6661 aaaatattga taccgcttaa gagtataccc gaaatttgtt gtcccccctt caagcagaag 6721 tttagattcg tagtcgcccg accaatccac ttatccatag cccacacaat cgccctctct 6781 tccagagccc cccgcttttc taccccatct caatccaacc caaggaacgc agttaaaata 6841 gtcatcatgt ttacttgatc aatatactta acaccctata cgactatata tttacatatt 6901 aacaagcgta tatatatata tattatagat acataacacg catatttctt tttatgtatt 6961 gtacaacaaa caacaaaatc gactatgtat gtgaagttct agcaaaaagc aaaaaataaa 7021 tgttcttgaa aaagtaaatc ttcaaaatga aacagcaaaa aaaaagaaac aacagaaata 7081 aaatgcaaag tttgcaaaat tttagtgata ttcaagaa