PREDICTED: Drosophila takahashii sister-of-Sex-lethal (ssx),

LOCUS       XM_070219242            1741 bp    mRNA    linear   INV 09-DEC-2024
            transcript variant X4, mRNA.
ACCESSION   XM_070219242
VERSION     XM_070219242.1
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1741
                     /gene="ssx"
                     /note="sister-of-Sex-lethal; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 22
                     Proteins"
                     /db_xref="GeneID:108058408"
     CDS             217..1623
                     /gene="ssx"
                     /codon_start=1
                     /product="sex-lethal homolog isoform X4"
                     /protein_id="XP_070075343.1"
                     /db_xref="GeneID:108058408"
                     /translation="MSNSEKMQGQEHDDEQSSDIEESADNVGRDEATDEDEDSNGHMQ
                     QEEDADGDGDNDGDNDGDGDQDGQDNQEQSGDEDGQNNGQSNNNGSSQQQQHQQQQQQ
                     LQQQMDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVD
                     YKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRI
                     FSPFGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRL
                     AEEHGKAKAAQFMNQIGGGNGGGGGGGGPPHMGGGPGGPMPHHHNNHHHHNNHHNPHM
                     PPHHHQQQHPHQHPHHHPPLHHMQQHPHHPNNHHNNHNNHHNNNHNNHNNNNHHNMGG
                     PHPHPHHMQQMHHPMGMNMGMGVNMGMGGMGMGMPIHGGGGGNGGGGGGNNNNNGGGN
                     GNGGGGGGGNFHHMAHRD"
     misc_feature    <541..1092
                     /gene="ssx"
                     /note="sex-lethal family splicing factor; Region:
                     sex-lethal; TIGR01659"
                     /db_xref="CDD:273740"
     polyA_site      1741
                     /gene="ssx"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ctagcgcccc actcgatagt tccatatcga tgttttcacc agctctatag cgaccttagc
       61 gtttcgagga aaaaaaacac agaaaccgct gtttttcggt gcagtttgtg aagccgtttg
      121 ctgaaaactt gtggcgcgaa ctgcgacgca aaaaaaacgc attaagaagc cccgaaaaat
      181 aaacaggagc taaatcgcct tgaaattgta gaaaagatgt ccaattcgga gaagatgcag
      241 ggccaggagc acgacgacga gcagtcctct gacatagagg agtccgccga caatgtgggc
      301 cgcgatgagg ccaccgacga ggacgaggac agcaatggcc atatgcagca ggaggaggat
      361 gccgatggcg atggcgataa tgatggtgat aacgatggtg atggcgacca ggatggccag
      421 gataaccagg agcagtcggg cgacgaggac ggccaaaaca acgggcaaag caacaacaat
      481 ggctcgtcgc aacagcagca acatcagcag cagcaacagc agctgcagca gcaaatggat
      541 cgcaccagtg ccaccaatct gattatcaac tacttgccgc aggacatgac cgatcgcgag
      601 ctgtacaatc tgttcagcgg ctgtgggccc atcaacacct gcaagataat gcgcgacttt
      661 aagaccggtt atagcttcgg ctacggcttc gtggactaca aaacggagtc ggactcggag
      721 gatgccatcc agaagctgaa cggcttctat gtgcgcaaca agcgtttaaa ggtctcgtat
      781 gcccgacctg gtggtcagtc catcaaggat accaatctgt acgtcatcaa cctttcgcgg
      841 aacatcaacg acgacatgct cgaccgcatc ttctcgccct tcggcctcat agtccagcgc
      901 aatatcctga gagacaagct cactggacgc ccacgcggcg tcgcctttgt gcgctacaac
      961 aagcgcgagg aggcccagga ggcgatcaag gcgctgaaca acacggtgcc cgagggcgga
     1021 tcccagccga tttgggtgcg actcgcggaa gagcacggca aggccaaggc cgctcagttt
     1081 atgaatcaga ttggcggcgg caacggtggt ggtggtggcg gtggaggccc accgcacatg
     1141 ggcggcggac ccggcggacc gatgccgcat caccacaaca accaccatca tcacaacaac
     1201 caccataatc cgcatatgcc gccacaccat catcagcagc agcatccgca ccagcatccg
     1261 caccaccatc cgccgctgca ccacatgcag cagcatccgc atcatcccaa caatcaccac
     1321 aacaatcata acaaccatca taacaacaat cacaacaacc ataacaacaa caatcaccac
     1381 aacatgggtg gtccgcatcc gcatccgcat cacatgcagc aaatgcacca cccgatgggc
     1441 atgaacatgg gcatgggcgt gaacatggga atgggcggca tgggcatggg catgcccatc
     1501 catggaggag gtggtggcaa cggcggcggc ggcggaggca acaacaacaa caatggaggc
     1561 ggaaacggca acggcggcgg cggtggtggt ggcaacttcc accacatggc gcacagagac
     1621 taaacttaac gacttagcgc gagagaaaga aagaaaccga aaaatacatg tatttaaact
     1681 ttaaaattcg aagttgatcg aagttaattg ataataataa acctaaaaca cacaaatcga
     1741 a