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LOCUS XM_070219239 5075 bp mRNA linear INV 09-DEC-2024 X4, mRNA. ACCESSION XM_070219239 VERSION XM_070219239.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5075 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5075 /gene="chas" /note="chascon; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108056691" CDS 233..4399 /gene="chas" /codon_start=1 /product="uncharacterized protein chas isoform X3" /protein_id="XP_070075340.1" /db_xref="GeneID:108056691" /translation="MALSKTIKSKAGAKDEQNELVEFEPKDDEESNEATASNCDTEAI TKEEEWITKRKTELTTTRQIETRVKRNVKLQDGKVIEDSGPIVSTNTTEDTDKQETET TEKRDLDLPDDLDGNAQLIDVAALQAGAVNETQLAQIQEVFGPADGAGKLVKRMVPRP VDGLVRQTDDKRVISHEEIKDYHETEDVKHHGDFTDQTYVNAVRDGVEDLEAVLCSPE SQRQLVPLGPQVVANRSKSRKTIDSEDTQKRCLAQEDGTLVTESRRTTEHELILDDEL PDLPAANSDERGLQLQVGEQVTTTAANQRFFRQRDEQHVDVLANGRLQSTEMRYAAET TQMDKDGPADLERPGDWDSLSDRMRKLRRSQQQQQKEVALLADRKDALTKRPLDFDRE EETRKGETMKWLESHFGSESTASNDSRDDEADAEAVEPTKKSYFNVTIKSQSQPQAHA QHIHAQSHLATQQHAHPQHISHGHHPQTLPRSAERERERERERERERHPTAATLERKP PGNSAGGRSKYFQGISNWSERKDPQGSPAVNHFSSQAFRDDLQETIRRNGLKKKVSGP PGSSQGSLALAQEQQQQPKDSYVSREDILQQKRQSLSSQFLARSMRGSRDALDDLEAI PGPGPGPGPSINSPRGPEEPSHKRVAYGHRSGAINGHAVNGGAMTNGRGKSYEPAAQP PPQLPTAVPVGVLEYSGNGGGSQLSLNPRPTVPQRRRAIEKKLGEHSHSHSHHSSSHT SHTGGHLPAVKSQAPLPSQVSQLEPPPDYSPPPRSRSRSSSPQVDYLMTRDVPASTMT LSRKQQQRTRFAPTSSYPPATGGAGNLRPPGATSASTSNLSAMSGGHGGGSTSKSSRM GQAIGNSLRKLVSKIRSASAERKFRMKSAASKSREQSPSPGHDPRGGGGGGVGPPVTT YQQYNVIDGHIGSHDSEDSNSDNQRRRERERERERERERERERERDRDREREREPPKQ ENQSRLNFKRAESADPQLQHLEHQAISPRQRYYLGEDPYSSTLYGKENLYERRPRQRS NMERPDERMERLEREDDYYESRAPPPVTAAHTLGRYQKHGQRFSGSTPNLHQQQQDYR SAQTLPRKLHEQRSQQRFGNGMEKQSSGRGNYLPVAPGPQQQRGMNQNPIPSPSSNPI PGQMQPQGPAKPARTYAKVLNRSKSFNVHGMNGSNDPSPIYIEKLTRNNYQQPRQQLQ QQQEPNFGYGLGQGPNANYKSNPHLFSGKDNSLKGGLKSPSIVNLISRSQKDLTKIGP GNDDDEIVGGSYQQEQDKKQLYLRGLHQQAPDLYRVIHGDEEYGGGGSRKYPLQAKYS LDSRSPPSVELNKDTASIVRRSSEVDHQQQQQHHHQQHHHHHIQQQNLRRGSGATIIE LRTAAGGHRK" misc_feature <3437..3790 /gene="chas" /note="polyadenylate binding protein, human types 1, 2, 3, 4 family; Region: PABP-1234; TIGR01628" /db_xref="CDD:130689" polyA_site 5075 /gene="chas" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtaaaaaagc aataaaaaag aataaaattc caagaacaat ttcaaaacaa aagcaagttt 61 ggaaaagcaa gacttagaat cgtggacgat gaagggagtt tagaagtatc tttcagaaat 121 cgagcgtgga tcttttggaa aataaacgag gaggttaaac ataaacaacg tcaacgagaa 181 gaaatcgaaa tatattcgaa tatatttatg tgaaaaatct gaaaaaaacg ctatggcttt 241 aagcaaaacc atcaaatcaa aagctggcgc caaagacgaa caaaacgaac tggtcgaatt 301 cgagcccaaa gatgacgagg agagcaacga ggccacggca agcaattgcg atacagaagc 361 tataaccaaa gaagaggagt ggataacgaa gcgcaagacc gaactcacaa ctaccagaca 421 gatcgaaacg agagtaaagc gaaatgtgaa gctgcaggat ggcaaggtga tcgaggattc 481 gggacccatt gtgtccacaa acacgaccga ggacaccgat aagcaggaga cggaaaccac 541 tgagaaacgc gaccttgacc tgcccgatga ccttgatggc aatgcccagc tgatcgatgt 601 ggccgccctg caggcgggcg ccgtaaatga aacgcagttg gcccaaattc aagaggtctt 661 cggaccggcg gatggggctg ggaagctggt caagcggatg gttccacgtc cggtggacgg 721 actagtgcgt cagacggacg acaagcgggt aatatcgcac gaggagatca aggactacca 781 cgaaacggag gacgtcaagc atcacggcga ctttactgat cagacctacg tgaacgcagt 841 tcgcgacgga gtcgaggacc tcgaggccgt cctctgttcg ccggagagcc agcgacagtt 901 ggtgcccctc ggaccgcagg tggtggccaa tcggagcaag tcccgcaaga ccatcgactc 961 ggaggacacg cagaagcgtt gcctggccca ggaggacggc actttggtca ccgagagtcg 1021 gcgcaccacc gagcacgagc taatcctcga cgacgagctg cccgatcttc cagctgcgaa 1081 ctccgatgaa cgcggactgc agctccaggt gggcgagcag gtgaccacca cggcggccaa 1141 tcagcggttc ttccgccagc gggacgagca gcatgtggac gtgctagcca acgggcggct 1201 ccaatccacc gagatgcgct acgccgccga gaccacgcag atggacaagg acggacccgc 1261 cgatctggag cgaccgggcg actgggacag cctctccgac cggatgcgca agcttcgccg 1321 ctcccagcag cagcaacaga aggaggttgc ccttttggcg gatcgcaagg atgcgctgac 1381 caagcgaccc ctggacttcg atcgcgagga ggagacgcgc aagggcgaga cgatgaagtg 1441 gctggagtcg cactttggca gcgagtccac cgcctccaac gattcccgcg acgacgaggc 1501 cgatgcggaa gccgtggagc cgaccaagaa gagctacttc aatgtgacaa tcaagtcgca 1561 gagccagccg caggcgcatg cgcagcacat ccatgcccaa tcgcacctgg ccacccagca 1621 gcatgcgcat ccgcagcaca tctcccatgg ccaccacccg cagacgctgc ccaggagcgc 1681 cgaaagggag agggagaggg agagggaaag agaaagggaa cgccatccca cagccgccac 1741 gctggagagg aagccgccgg gcaactcggc cggcggtcgc tccaagtact tccagggcat 1801 ctcgaactgg tcggaacgca aggatcccca gggatccccg gcggtcaatc acttctcgtc 1861 gcaggccttt cgcgacgatc tgcaggagac cattcgaagg aatgggctga agaagaaggt 1921 cagcggcccg cctggttcca gtcagggatc cctggctttg gcccaggagc agcagcagca 1981 gcccaaggac agctatgtca gccgcgagga tatactgcag cagaagcgcc agagtctctc 2041 ctcacagttc ctggcccgct cgatgcgtgg ctctcgcgat gccctggacg atttggaggc 2101 cataccggga ccaggacctg gaccgggtcc atctataaac tcaccgcgtg gccccgagga 2161 accgtcgcat aagagagtag cctacggtca tcgcagcggc gccatcaacg ggcatgcggt 2221 aaacggagga gcgatgacca atggacgtgg caagagctat gagccagctg ctcagcctcc 2281 tcctcagctg cccaccgcag ttccagttgg agttctagag tacagcggca atggcggtgg 2341 cagccagctg agcctcaatc cgcgacccac cgtcccgcag cgacgacgtg ccatcgaaaa 2401 gaagctgggc gagcacagcc acagccacag ccaccactca tcatcccaca catcgcatac 2461 gggcggtcat ctgccggcag tcaagtcgca ggctccgctg ccctcgcagg tcagccagct 2521 ggaaccgccg ccggactact cgccgccgcc caggagtcgc agtcgctcgt cctcgccgca 2581 ggtggactac ctgatgacca gagatgtgcc cgccagcacg atgaccctca gccggaagca 2641 gcagcagcgc acccgattcg cacccacatc cagctatccg ccggcaaccg gaggggcagg 2701 caacctccgg ccaccgggcg ccacctcggc ctccacctcg aacctgtcgg ccatgagcgg 2761 aggtcacggc ggaggcagta cctccaagtc cagccgcatg ggccaggcga ttggcaattc 2821 gctgcggaag ctggtcagca aaatccgttc ggccagtgcc gagcgaaagt ttcgaatgaa 2881 atcggcggcc agcaagtcgc gcgaacagtc gcccagtccg ggacacgatc cccggggtgg 2941 aggaggagga ggagtgggtc caccggtgac cacctaccag cagtacaatg tgatcgatgg 3001 gcacatcggt agccacgatt ccgaggactc caatagcgat aatcagcggc gcagggagag 3061 ggagcgagaa agggagcgcg agcgggaaag ggagcgggaa agggaaagag atcgagatcg 3121 ggaacgggaa agggagcctc ccaagcagga gaaccaatcg cgtttgaatt tcaagcgcgc 3181 cgagtccgcg gatccccagc tgcagcacct ggagcaccag gccatcagtc ccaggcagcg 3241 gtactacctg ggcgaagatc cctactccag cacgctctac ggcaaggaga atctctacga 3301 gcgacggcca cgccagcgca gcaacatgga gcgtccggac gagcgaatgg agcgcttgga 3361 gcgagaggat gactactacg agtcgcgggc tccgccgccg gtgacggctg cccacacgtt 3421 gggtcgctac cagaagcacg gccagcgctt cagtggctct acgcccaatc tgcaccagca 3481 gcagcaggac taccgctcgg cccagacgct gccgcgcaag ttgcacgagc agcgcagcca 3541 gcagagattc ggcaacggga tggagaagca gtcgtctggt aggggcaact acctgccggt 3601 tgctcctgga ccgcagcagc aaagggggat gaaccagaat cccattccaa gtcccagcag 3661 caatccgatt cccggccaga tgcagccgca gggaccggcg aaaccggcca ggacctacgc 3721 caaggtcctg aatcgcagca agagctttaa tgtgcacggg atgaacggaa gcaacgaccc 3781 cagtcccatc tacatcgaga agctcacgcg gaacaactac caacagccac gccagcagct 3841 gcaacagcag caggagccga actttggcta tggtttgggc cagggaccca atgccaacta 3901 caagtccaat ccgcatctct tctccggcaa ggacaactcg ctgaagggcg gcctgaagag 3961 cccctcgatt gtgaatctca taagtcgcag ccaaaaggat ctcacgaaga tcgggccggg 4021 caacgatgac gacgagatcg tcggcggcag ctatcagcag gagcaggata agaagcagct 4081 gtatttgcgt ggcctgcatc aacaggcacc ggatctttac cgcgtgatac atggcgacga 4141 ggagtacggt ggcggtggct ccaggaagta tccgctgcag gccaagtatt cgctggactc 4201 gcgttcgccg ccctccgtgg agctcaacaa ggataccgcg agcattgtgc ggcgcagcag 4261 cgaggtggac catcagcagc agcagcagca tcaccaccag cagcaccacc accatcacat 4321 ccagcaacag aatctgcgac gtggctcggg agccaccatc attgagctgc gcaccgccgc 4381 cggtggccat cgcaagtaat tcgccattat cctaccaaga ccataagatc ctacactcct 4441 atattttgaa accatagtcg agctttcctt gtgtctagtg tttaaattcc tcatttggaa 4501 ctttttcaat ttttaaaatc aaaatacatt ataaaattca ctaagaacct aaaaaatagc 4561 attgggaaag ctcgactatt taattcccta ccatattccc taactatttg ctaacaaatg 4621 ctcggccgtg ggctttagtt tcatttgaca agcagcaaat aaaaacaaaa aggccaatca 4681 accaattgat accaattgtt aaatgggtaa tgaaaaagct ataaagttga tggtaaatcg 4741 ataacgaaat acaaaagtaa tgttaaaaaa atataaaaat caaaagataa gaaaagaaaa 4801 tctaaaagca acgtggaagc cattcccact gtcctgccac gcctcttcca atcgtaattt 4861 gataatacct actataatgc ctacatacgc ctaattacat tgtctatttt atcatttttg 4921 tttttttttt tactactaat attaacgttt gttgtataga taccgttaaa tcgataaact 4981 aactaaaata actaatatta attcgatatt attgtacaat tttgattaat aaacaaattg 5041 caattaaaat taaaataaag tgccaaaata aacaa