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LOCUS XM_070219238 5984 bp mRNA linear INV 09-DEC-2024 X1, mRNA. ACCESSION XM_070219238 VERSION XM_070219238.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5984 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5984 /gene="chas" /note="chascon; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108056691" CDS 620..5308 /gene="chas" /codon_start=1 /product="uncharacterized protein chas isoform X1" /protein_id="XP_070075339.1" /db_xref="GeneID:108056691" /translation="MVVILLLSPCTCSRSSSSSHAHEPAHAPPKHHQHHQQALQPPEP PQANSGDSRSSNESSSASTGDTAIPAGYLQLHHQKQKEKQKDQQDQHYPQQPSHSHST TAPPLPKVFGHGRWLPLQPPANAVPKPPRTHGLGIHWPSNVYAPAPNQPIIFRVQSSL PNGSFTNATTTTTSTTDYVRHVTRVNFYDIDTSQVEFEPKDDEESNEATASNCDTEAI TKEEEWITKRKTELTTTRQIETRVKRNVKLQDGKVIEDSGPIVSTNTTEDTDKQETET TEKRDLDLPDDLDGNAQLIDVAALQAGAVNETQLAQIQEVFGPADGAGKLVKRMVPRP VDGLVRQTDDKRVISHEEIKDYHETEDVKHHGDFTDQTYVNAVRDGVEDLEAVLCSPE SQRQLVPLGPQVVANRSKSRKTIDSEDTQKRCLAQEDGTLVTESRRTTEHELILDDEL PDLPAANSDERGLQLQVGEQVTTTAANQRFFRQRDEQHVDVLANGRLQSTEMRYAAET TQMDKDGPADLERPGDWDSLSDRMRKLRRSQQQQQKEVALLADRKDALTKRPLDFDRE EETRKGETMKWLESHFGSESTASNDSRDDEADAEAVEPTKKSYFNVTIKSQSQPQAHA QHIHAQSHLATQQHAHPQHISHGHHPQTLPRSAERERERERERERERHPTAATLERKP PGNSAGGRSKYFQGISNWSERKDPQGSPAVNHFSSQAFRDDLQETIRRNGLKKKVSGP PGSSQGSLALAQEQQQQPKDSYVSREDILQQKRQSLSSQFLARSMRGSRDALDDLEAI PGPGPGPGPSINSPRGPEEPSHKRVAYGHRSGAINGHAVNGGAMTNGRGKSYEPAAQP PPQLPTAVPVGVLEYSGNGGGSQLSLNPRPTVPQRRRAIEKKLGEHSHSHSHHSSSHT SHTGGHLPAVKSQAPLPSQVSQLEPPPDYSPPPRSRSRSSSPQVDYLMTRDVPASTMT LSRKQQQRTRFAPTSSYPPATGGAGNLRPPGATSASTSNLSAMSGGHGGGSTSKSSRM GQAIGNSLRKLVSKIRSASAERKFRMKSAASKSREQSPSPGHDPRGGGGGGVGPPVTT YQQYNVIDGHIGSHDSEDSNSDNQRRRERERERERERERERERERDRDREREREPPKQ ENQSRLNFKRAESADPQLQHLEHQAISPRQRYYLGEDPYSSTLYGKENLYERRPRQRS NMERPDERMERLEREDDYYESRAPPPVTAAHTLGRYQKHGQRFSGSTPNLHQQQQDYR SAQTLPRKLHEQRSQQRFGNGMEKQSSGRGNYLPVAPGPQQQRGMNQNPIPSPSSNPI PGQMQPQGPAKPARTYAKVLNRSKSFNVHGMNGSNDPSPIYIEKLTRNNYQQPRQQLQ QQQEPNFGYGLGQGPNANYKSNPHLFSGKDNSLKGGLKSPSIVNLISRSQKDLTKIGP GNDDDEIVGGSYQQEQDKKQLYLRGLHQQAPDLYRVIHGDEEYGGGGSRKYPLQAKYS LDSRSPPSVELNKDTASIVRRSSEVDHQQQQQHHHQQHHHHHIQQQNLRRGSGATIIE LRTAAGGHRK" misc_feature <4346..4699 /gene="chas" /note="polyadenylate binding protein, human types 1, 2, 3, 4 family; Region: PABP-1234; TIGR01628" /db_xref="CDD:130689" polyA_site 5984 /gene="chas" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gacggccagc agtcgcagac gcgccatcga acacgccgct cgcgatcgcg ctctccattc 61 ggattttcca tttttcattt tccattttcc gtttctcggt tttccagcgt ttttcgtttt 121 tcgcttttcc gtttcggttt ccatttcgtt ggcgcttcat ttaacacaac cgcttaaatt 181 gaaaggcccg cggaatcgat ctaaatttaa ttgtattcgt attctgtttt attgtttttt 241 tgtttgttca ttgtcgcgtt gcacttgact ttttttgttc gtgtggtttt ttgcactaat 301 tgcctgaatg gcaaaggcaa agtgcaaagt gtgacagtgc aagagataaa gagtgagcga 361 gatagataga gagaaggaat ccgggcttaa tcatcgcaag ctggagccgt gaatcgcgct 421 ctgcgatgtg gtgcgagctc tggacttgcc gccgagcaat accacaaact ggagcgattg 481 gaactggaag cgggagtgga atcggaacgg gaactgggcg gagaactgga gggcaggagg 541 tgcatgagga gggcgagcag atgtagtcgg cagttaaagc agagccaccg ttgccaccgc 601 caccgcgtca gatgatcgaa tggtggtgat cctcctactg tcgccatgca cttgcagccg 661 cagcagcagc agcagccacg cccacgaacc cgcccacgca ccacccaagc atcatcagca 721 ccaccaacaa gcactccaac caccagaacc accacaagcc aatagtggag attcccggag 781 cagcaatgaa tcttcatcgg catccacggg cgacacagcc attccggctg gatatctgca 841 gttgcaccac cagaaacaga aagagaaaca aaaggatcag caggatcagc attaccccca 901 gcaacctagt catagtcata gcaccacagc accaccactg cccaaggttt ttggccatgg 961 aagatggttg cccctgcaac cgcctgcgaa tgccgtgccc aagccaccgc gcacccatgg 1021 attgggcatc cattggccat cgaacgttta tgcccctgcc ccaaatcaac cgatcatctt 1081 ccgcgtccaa tcgtcactgc ccaacgggag ctttactaac gccacaacca ccaccaccag 1141 caccactgac tacgtgcgtc acgtgacccg cgttaacttc tacgacattg atacttcgca 1201 ggtcgaattc gagcccaaag atgacgagga gagcaacgag gccacggcaa gcaattgcga 1261 tacagaagct ataaccaaag aagaggagtg gataacgaag cgcaagaccg aactcacaac 1321 taccagacag atcgaaacga gagtaaagcg aaatgtgaag ctgcaggatg gcaaggtgat 1381 cgaggattcg ggacccattg tgtccacaaa cacgaccgag gacaccgata agcaggagac 1441 ggaaaccact gagaaacgcg accttgacct gcccgatgac cttgatggca atgcccagct 1501 gatcgatgtg gccgccctgc aggcgggcgc cgtaaatgaa acgcagttgg cccaaattca 1561 agaggtcttc ggaccggcgg atggggctgg gaagctggtc aagcggatgg ttccacgtcc 1621 ggtggacgga ctagtgcgtc agacggacga caagcgggta atatcgcacg aggagatcaa 1681 ggactaccac gaaacggagg acgtcaagca tcacggcgac tttactgatc agacctacgt 1741 gaacgcagtt cgcgacggag tcgaggacct cgaggccgtc ctctgttcgc cggagagcca 1801 gcgacagttg gtgcccctcg gaccgcaggt ggtggccaat cggagcaagt cccgcaagac 1861 catcgactcg gaggacacgc agaagcgttg cctggcccag gaggacggca ctttggtcac 1921 cgagagtcgg cgcaccaccg agcacgagct aatcctcgac gacgagctgc ccgatcttcc 1981 agctgcgaac tccgatgaac gcggactgca gctccaggtg ggcgagcagg tgaccaccac 2041 ggcggccaat cagcggttct tccgccagcg ggacgagcag catgtggacg tgctagccaa 2101 cgggcggctc caatccaccg agatgcgcta cgccgccgag accacgcaga tggacaagga 2161 cggacccgcc gatctggagc gaccgggcga ctgggacagc ctctccgacc ggatgcgcaa 2221 gcttcgccgc tcccagcagc agcaacagaa ggaggttgcc cttttggcgg atcgcaagga 2281 tgcgctgacc aagcgacccc tggacttcga tcgcgaggag gagacgcgca agggcgagac 2341 gatgaagtgg ctggagtcgc actttggcag cgagtccacc gcctccaacg attcccgcga 2401 cgacgaggcc gatgcggaag ccgtggagcc gaccaagaag agctacttca atgtgacaat 2461 caagtcgcag agccagccgc aggcgcatgc gcagcacatc catgcccaat cgcacctggc 2521 cacccagcag catgcgcatc cgcagcacat ctcccatggc caccacccgc agacgctgcc 2581 caggagcgcc gaaagggaga gggagaggga gagggaaaga gaaagggaac gccatcccac 2641 agccgccacg ctggagagga agccgccggg caactcggcc ggcggtcgct ccaagtactt 2701 ccagggcatc tcgaactggt cggaacgcaa ggatccccag ggatccccgg cggtcaatca 2761 cttctcgtcg caggcctttc gcgacgatct gcaggagacc attcgaagga atgggctgaa 2821 gaagaaggtc agcggcccgc ctggttccag tcagggatcc ctggctttgg cccaggagca 2881 gcagcagcag cccaaggaca gctatgtcag ccgcgaggat atactgcagc agaagcgcca 2941 gagtctctcc tcacagttcc tggcccgctc gatgcgtggc tctcgcgatg ccctggacga 3001 tttggaggcc ataccgggac caggacctgg accgggtcca tctataaact caccgcgtgg 3061 ccccgaggaa ccgtcgcata agagagtagc ctacggtcat cgcagcggcg ccatcaacgg 3121 gcatgcggta aacggaggag cgatgaccaa tggacgtggc aagagctatg agccagctgc 3181 tcagcctcct cctcagctgc ccaccgcagt tccagttgga gttctagagt acagcggcaa 3241 tggcggtggc agccagctga gcctcaatcc gcgacccacc gtcccgcagc gacgacgtgc 3301 catcgaaaag aagctgggcg agcacagcca cagccacagc caccactcat catcccacac 3361 atcgcatacg ggcggtcatc tgccggcagt caagtcgcag gctccgctgc cctcgcaggt 3421 cagccagctg gaaccgccgc cggactactc gccgccgccc aggagtcgca gtcgctcgtc 3481 ctcgccgcag gtggactacc tgatgaccag agatgtgccc gccagcacga tgaccctcag 3541 ccggaagcag cagcagcgca cccgattcgc acccacatcc agctatccgc cggcaaccgg 3601 aggggcaggc aacctccggc caccgggcgc cacctcggcc tccacctcga acctgtcggc 3661 catgagcgga ggtcacggcg gaggcagtac ctccaagtcc agccgcatgg gccaggcgat 3721 tggcaattcg ctgcggaagc tggtcagcaa aatccgttcg gccagtgccg agcgaaagtt 3781 tcgaatgaaa tcggcggcca gcaagtcgcg cgaacagtcg cccagtccgg gacacgatcc 3841 ccggggtgga ggaggaggag gagtgggtcc accggtgacc acctaccagc agtacaatgt 3901 gatcgatggg cacatcggta gccacgattc cgaggactcc aatagcgata atcagcggcg 3961 cagggagagg gagcgagaaa gggagcgcga gcgggaaagg gagcgggaaa gggaaagaga 4021 tcgagatcgg gaacgggaaa gggagcctcc caagcaggag aaccaatcgc gtttgaattt 4081 caagcgcgcc gagtccgcgg atccccagct gcagcacctg gagcaccagg ccatcagtcc 4141 caggcagcgg tactacctgg gcgaagatcc ctactccagc acgctctacg gcaaggagaa 4201 tctctacgag cgacggccac gccagcgcag caacatggag cgtccggacg agcgaatgga 4261 gcgcttggag cgagaggatg actactacga gtcgcgggct ccgccgccgg tgacggctgc 4321 ccacacgttg ggtcgctacc agaagcacgg ccagcgcttc agtggctcta cgcccaatct 4381 gcaccagcag cagcaggact accgctcggc ccagacgctg ccgcgcaagt tgcacgagca 4441 gcgcagccag cagagattcg gcaacgggat ggagaagcag tcgtctggta ggggcaacta 4501 cctgccggtt gctcctggac cgcagcagca aagggggatg aaccagaatc ccattccaag 4561 tcccagcagc aatccgattc ccggccagat gcagccgcag ggaccggcga aaccggccag 4621 gacctacgcc aaggtcctga atcgcagcaa gagctttaat gtgcacggga tgaacggaag 4681 caacgacccc agtcccatct acatcgagaa gctcacgcgg aacaactacc aacagccacg 4741 ccagcagctg caacagcagc aggagccgaa ctttggctat ggtttgggcc agggacccaa 4801 tgccaactac aagtccaatc cgcatctctt ctccggcaag gacaactcgc tgaagggcgg 4861 cctgaagagc ccctcgattg tgaatctcat aagtcgcagc caaaaggatc tcacgaagat 4921 cgggccgggc aacgatgacg acgagatcgt cggcggcagc tatcagcagg agcaggataa 4981 gaagcagctg tatttgcgtg gcctgcatca acaggcaccg gatctttacc gcgtgataca 5041 tggcgacgag gagtacggtg gcggtggctc caggaagtat ccgctgcagg ccaagtattc 5101 gctggactcg cgttcgccgc cctccgtgga gctcaacaag gataccgcga gcattgtgcg 5161 gcgcagcagc gaggtggacc atcagcagca gcagcagcat caccaccagc agcaccacca 5221 ccatcacatc cagcaacaga atctgcgacg tggctcggga gccaccatca ttgagctgcg 5281 caccgccgcc ggtggccatc gcaagtaatt cgccattatc ctaccaagac cataagatcc 5341 tacactccta tattttgaaa ccatagtcga gctttccttg tgtctagtgt ttaaattcct 5401 catttggaac tttttcaatt tttaaaatca aaatacatta taaaattcac taagaaccta 5461 aaaaatagca ttgggaaagc tcgactattt aattccctac catattccct aactatttgc 5521 taacaaatgc tcggccgtgg gctttagttt catttgacaa gcagcaaata aaaacaaaaa 5581 ggccaatcaa ccaattgata ccaattgtta aatgggtaat gaaaaagcta taaagttgat 5641 ggtaaatcga taacgaaata caaaagtaat gttaaaaaaa tataaaaatc aaaagataag 5701 aaaagaaaat ctaaaagcaa cgtggaagcc attcccactg tcctgccacg cctcttccaa 5761 tcgtaatttg ataataccta ctataatgcc tacatacgcc taattacatt gtctatttta 5821 tcatttttgt tttttttttt actactaata ttaacgtttg ttgtatagat accgttaaat 5881 cgataaacta actaaaataa ctaatattaa ttcgatatta ttgtacaatt ttgattaata 5941 aacaaattgc aattaaaatt aaaataaagt gccaaaataa acaa