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LOCUS XM_070219236 1963 bp mRNA linear INV 09-DEC-2024 (LOC108068044), transcript variant X7, mRNA. ACCESSION XM_070219236 VERSION XM_070219236.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1963 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1963 /gene="LOC108068044" /note="YLP motif-containing protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108068044" CDS 612..1838 /gene="LOC108068044" /codon_start=1 /product="contactin-2 isoform X7" /protein_id="XP_070075337.1" /db_xref="GeneID:108068044" /translation="MSSTSSSVLTLSSFNLLFFTQVLTVLSSTIKYNEYATDKGGNVS IPCIAQGNIMWVKEHGNNSTIIQTGRVLVLRNVSTTDAGIYVCFASVPRPSTTTSAAA AATTTSKPATSATTSPQNQQEKETQPVVDKNEDGIDEEPQVEEELEYQAQQRTRLIVR TVPGPVSQLYFKASTILGFLIWRFNKTQSGGYPVRSFTAEFRNVSYKTPPANASFEHA WSRMDPINIAFNVRQMEVYRLAPNTTYEFRIWANNELGSGEVVTTNVTTLPETKEEEL QDGWDSIELIPNIILNPGFSESDAQGQGQAGDPNGGEEGQDDDDDEDVAMPFPRTIIF GQHHRTPPPPRLHLPPPHHQQQQHHHHLQHHQYHHHRRQDEDDDDDYEEEHEPTMERF KRKVSVFFTGPTIKRI" misc_feature 726..881 /gene="LOC108068044" /note="Immunoglobulin domain; Region: Ig; cl11960" /db_xref="CDD:472250" misc_feature 738..752 /gene="LOC108068044" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409353" misc_feature 765..779 /gene="LOC108068044" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409353" misc_feature 861..878 /gene="LOC108068044" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409353" ORIGIN 1 gcaactcgaa cgcaacggta catgaacggc ggaaagctaa cgagaatcca caagaatcca 61 gtgtcccgtt aacaacaact ctctccaaac accgaattgc agttaaatta aacaaacact 121 acgtaatttt ttttcaagtt gaatatttcc aagttgaact atcttgaata ccacctttcc 181 caaccgcaag cagtgcttaa aatgcccgaa aaatcagcag ccgcattttg aagttacgtc 241 aaaaggagtc gcgaaagagg aggaccaaga ggagaggaga aaggagggaa gagaaggagc 301 aaaaataaca acaaagcgaa cgcacgcgat aggagtaaca gtaaatgtga aaggataaaa 361 taggagaaag tagtgaaatc agcaagagaa cttttcttta ttttcttcag tttttttttt 421 ttggtttttg gcgcgtcgtc gctgtttgct tttttgtttt tattattttc tctctgtgcc 481 tgcgcctttg ttgattgctt tgcagccggc tttggccaaa agggaggggg cgataaagct 541 aggaggagaa ggaggaggag cagagaaagc agaagcttat gtaaagcgtg ctttaagcgt 601 gctatggaag catgtcgtcc acttccagct ccgtgctaac gttgtcatcg tttaatctat 661 tatttttcac ccaagtgctc acggtactca gctcgacgat caagtacaac gaatacgcga 721 cggacaaggg cggcaatgtg agcataccct gcatagccca gggcaatatt atgtgggtga 781 aggagcacgg caacaacagc acgataatcc agactggtcg tgttttggtg ctgcgcaatg 841 tgagcactac ggatgcggga atttacgtgt gcttcgcctc agtgccacgc ccatcgacaa 901 caacaagtgc agcagcagca gcaacaacga caagcaaacc cgcaacatca gcaactacct 961 caccgcaaaa tcagcaggag aaagaaacgc agccagtggt ggataaaaat gaggatggta 1021 tcgatgagga accccaagtg gaggaggaac tggagtacca ggcccagcag cgaaccaggc 1081 tcatcgttcg caccgttccg ggcccagttt cgcagctcta cttcaaggcc tccaccatac 1141 tgggcttcct catctggcgc ttcaacaaga cccaatccgg gggctatccg gtgcgcagct 1201 ttacggccga gttccggaat gtctcctaca aaaccccgcc ggcgaatgcc agtttcgagc 1261 acgcctggag caggatggat ccaatcaaca tagccttcaa tgtgcgccaa atggaagtct 1321 atcggctggc ccccaacacc acctatgagt ttcggatatg ggccaacaac gagctgggca 1381 gcggcgaggt ggtcaccacc aatgtgacca cgctgccgga gaccaaggag gaggaactgc 1441 aagatggttg ggacagcatt gagcttatac cgaacataat acttaatccc ggtttcagcg 1501 agtcggatgc tcaaggtcag ggtcaggcgg gtgatccgaa tggcggggag gaggggcagg 1561 atgacgacga cgatgaagat gtggccatgc cctttccgcg caccatcatc tttggccagc 1621 accatcggac gcctccgccg ccgcgcctcc acctgccacc gccgcaccac cagcagcagc 1681 agcaccacca ccacctgcag caccaccagt atcaccacca ccggcggcag gacgaggacg 1741 acgacgacga ctacgaggag gagcacgagc ccaccatgga gcggttcaag cgcaaagttt 1801 ccgtcttctt caccggaccc accatcaagc gcatttgaga cgcatctgag tacaaacact 1861 ggtcaccaag gttgttgcac ggttaagatt cggattcgga tcgggatagt taggatccat 1921 agagcttatc gttgggaagc ctcgttttca tttcggtttc tcc