Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_070219232 6252 bp mRNA linear INV 09-DEC-2024 (LOC108068044), transcript variant X2, mRNA. ACCESSION XM_070219232 VERSION XM_070219232.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6252 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6252 /gene="LOC108068044" /note="YLP motif-containing protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108068044" CDS 165..5822 /gene="LOC108068044" /codon_start=1 /product="YLP motif-containing protein 1 isoform X2" /protein_id="XP_070075333.1" /db_xref="GeneID:108068044" /translation="MWGHWQTATGAVAPMGMGMGMGMGMAMPMGMGMGAPPPQPSVPP PLPDAPPPPPPADGGGAAAGGAPGAATQLTDSSSATPSASTFNPYASGGQAAEGGEAA GGNPYKQYTAAQYAAMTPEQQYALQHHWHQWQTYQAEYAKWHAQYGEQYKREMAAAAA VAATGGVQGVQGVPAPVAAAPSPAAAPVAAPVAAPPGPQAYPVAQNYYQAAPAASPSA PSAVSTTTPNSGPPLPGKIMAQPQMYNQPPPPPPQKSNYNQQNQSSNDLWSQPPPSNR YGGQNNQMNYNSNNAGPSDNQGSGGGFPNLQQPPPSLQRPPPQQENQWGNNNQQRGNN NSNNRNSWESSGPSTDNSGQQNRWDGPPPQNEMNNRWNGPPQGNQNNSNNNTNNNNDN NNRRWDGSSNQTQSGGDRDQQSRWMSGPPPGEQNRWMSGPPPSLSDQDQQDNQQQNNN NQQQNPRQNRWQSNSNNNSNSDMGNNSKQNNFQNNRKSWLSAEERGGGNPSQNPFNKN SQSSDFDQDQSSGNNNNNFGQQRGNFGGYNNQGNSYNNQDQGGGGGNNFGGNQGTRGR DNFGNSNNNFNNNRRQSNRWDTNRNQNQNQGYSDSGGNNDSGGGNYNQNRGNFNQRNA PFQQQQNQSQNQNTNQNQNRQQQQQQTPDLDEASFDRLFDQWEQQFEDWKRANANHPD RDEYRRYEEEFEKQRRRIAERREQMRRRRQQQMGSGSASGSSTDLPKEVGASQTEEQE DDGNFSDQEQGSKSNFSAPAFRGNNQGRQSQYQPASQQELKEKQPVNPTKTPQKVITP APPVAPPMAPVHPASLPPPSEVPGPPAPPVAPPQPPTASNLGKRRQTANPAPTPTPAK QVKQEEEPIFTISLDDDDDTDEDELPAAAAAAETPMGSIFKKSDGIPGLDLVEAEQGE STEAPVAANKNESLSNVLKDPNFLNNLTQAVANVQEREQRDRQQQQQQQGQDAPPDQE RGKDGRPLSFAEWQRKKNGGNDNKSQDSRDSMSPSVAEKPEAGGPGGNTNPNPRSRPN SGPGHGPPNDGPPRFDNFGPNQVPGGNFMDFEGPNGPGPGFGPPGRNFGPRGPNFGPG PGNNFGPGPFGPGGPHFGPGPGPNFRNNGPNFNPNFGPNFGPGGPRNFGPRGGPFGGP RRDDFGGPPFGGPNFGPGGPGGPNQRGFNGPGGPGGPAPNSDNPFRRQGGPPGPNFGD DDLGAGPPRGPRNFPNRNSFGNAGGPGNNQNNNRNKNWNDGPEQQQQQFPNNNNNSHP NEPIYRPMKVFDYSNNPPAAKVIDYGHKSGDGNPIDGPSGGSAVPADRMPDFRPVKTF EYGHSSNRMGMPGVMGMGMGGGPNQGMTGGPGGPGGPGGPGGAPNSKRKNKKKNKQQK REERIQFHQNRQLQSIAVDECTSSNPGQDEQQQQQQQQAQDEFQDQGDECPSNNEPND LEDISDGEDNLTPLDCDDDDNEALPPPPSMSRWNQGNAPEQFNQNPFNPFPARQFGGG IDGSAPPPPTMSLFPSAANANEKVPNPVTSTHLEMSVPTSENRNTISVDEVLMNPGRQ TRPKRICIILRGPPGCGKSHVARLIKEKELEMGGANPRILSIDDYFIIENDYVEKCPK TGKKIPKKEILYEYDDSMEETYMQYLIKSFKKTLSDNLYDFIIVDCNNNSLRTLNEFY CHAKDSNFVPYIVDLHCDLETCLGRNSHQRTEDEIRVVLDNWCNTPLQYIKLDVSTLL ENVVEMEDVEDMATDDNACADDGETAGAAAASEDAAVEETDDSNSADASNDCGFLKSK WECDTTEDNLARLDGTKRLMQNRRTASMADYLQLEDWEPPRTSANGKKRVRWADIEEK RSQEKMRAIGFVVGQTDWNRMMDPNAGSRALNKTKYIERIKRR" misc_feature 4842..5270 /gene="LOC108068044" /note="AAA domain; Region: AAA_33; pfam13671" /db_xref="CDD:463952" polyA_site 6252 /gene="LOC108068044" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttcaagcca aaaatggcga agttttcagt ttttttctcg tcccgattgc aagtgatttt 61 gtgaagcgct cttagttttc cggatagccc gtgttttccg tgttttccgg caaacgagaa 121 ctaaacagag agtgagcgag aagagccgcg agtgaaagcg cagcatgtgg ggccattggc 181 agacggccac cggcgcagtg gctccgatgg gaatgggcat gggcatgggc atgggcatgg 241 ccatgccaat ggggatggga atgggtgctc cgccgccgca gccttcggtg ccgccgcccc 301 tgcccgacgc cccgcccccg ccgccgccag cggatggagg gggagcagca gcaggaggag 361 ctcctggagc agctactcaa ctcaccgata gcagcagcgc taccccttcc gcttccactt 421 tcaaccccta tgccagcggc ggccaggcgg cggagggggg cgaggcggcc gggggcaacc 481 cctataagca gtacacggcc gcccagtatg cggcgatgac cccggagcag cagtacgccc 541 tgcagcacca ctggcaccag tggcagacct accaggcgga gtacgccaag tggcatgccc 601 agtacggcga gcagtacaag cgtgaaatgg ccgctgccgc cgccgtggcc gccactggag 661 gagttcaggg cgtccaggga gttcctgctc ccgtggcggc ggctccctcg cccgccgctg 721 ctcccgtagc cgctcccgtg gctgctccac cgggtccaca ggcctatccc gtggcccaga 781 attactacca ggctgccccg gctgcctcgc catccgctcc atcggctgtt tccaccacca 841 ctcccaattc cgggccaccg ctgcccggta agatcatggc ccagccgcag atgtacaacc 901 agccgccgcc gccgccaccg caaaagagca actacaatca gcagaatcag agcagcaatg 961 acttgtggtc gcagccgccg ccttctaacc gatatggcgg tcaaaacaac cagatgaact 1021 acaatagcaa caatgctgga ccatcggaca accagggaag cggaggagga tttcccaatc 1081 tccagcagcc gccgccttcg ctgcagcgtc cgccgccgca gcaggagaac cagtggggca 1141 acaacaacca acaacgcggc aacaacaaca gcaacaatcg taactcctgg gagtccagtg 1201 ggccatcaac cgataattct gggcagcaaa atcgctggga tggacctccc ccgcaaaatg 1261 aaatgaataa tcgctggaat ggaccgccgc agggcaacca aaacaacagc aacaacaaca 1321 cgaacaacaa caacgacaac aacaatcgcc gctgggatgg cagctcgaat caaacgcagt 1381 ctggcgggga tcgggatcaa cagagccgct ggatgagcgg cccgccgcct ggcgaacaga 1441 accgctggat gagcggacca ccgcctagct tgagcgacca ggatcagcag gataatcagc 1501 agcagaacaa caacaaccag cagcagaatc cccgccagaa tcgctggcag agcaacagca 1561 acaacaacag taattccgat atgggaaata acagcaagca gaacaatttc caaaataatc 1621 gaaagagctg gttgtcagca gaggagcgag gagggggcaa tcccagccag aatccattta 1681 acaagaactc ccagtcatct gatttcgatc aagatcaatc ctccggcaat aacaacaaca 1741 actttggcca gcaaagaggc aactttggcg gttataacaa ccaggggaat agttataaca 1801 accaggatca aggaggagga ggaggaaaca actttggagg caaccaggga acccgaggaa 1861 gagacaactt tggcaatagc aataataact tcaacaacaa tcgccgccag agcaatcgct 1921 gggatacgaa tcgcaatcag aatcaaaatc agggatattc tgattccgga ggcaacaatg 1981 attctggcgg agggaactac aaccaaaatc gtggcaattt caaccagcgg aatgcgccat 2041 tccaacagca gcagaatcag tcgcaaaatc agaataccaa tcaaaatcag aaccgccagc 2101 agcagcagca gcaaactccc gacttggacg aggccagctt tgaccgcctg ttcgaccagt 2161 gggagcagca gttcgaggac tggaagcggg ccaatgccaa tcatccggat cgcgacgagt 2221 atcgccgcta cgaggaggag ttcgagaagc agcgccgtcg cattgcggag cgcagggagc 2281 agatgcgtcg tcgtcggcag cagcaaatgg gatcgggatc agcttctgga tcttctacag 2341 atctacccaa agaagtggga gcttcgcaaa ccgaagagca ggaggatgat ggcaatttca 2401 gtgatcagga acagggatcg aagtccaatt tcagtgctcc cgccttccgt ggcaacaacc 2461 agggaaggca gagccaatac caaccagcca gccagcagga gttaaaggaa aagcagccag 2521 tcaacccgac taaaactccc cagaaggtga taacacctgc tccaccggtg gcgccaccaa 2581 tggctcccgt tcatccggct tccctgccgc cgccaagcga agttccgggt ccgcctgctc 2641 cgccggtggc tcctcctcag cctccgaccg ccagcaatct cggaaagcgt cggcaaacgg 2701 ccaatcccgc acccactccc acgcccgcca agcaggtgaa gcaggaggag gagcccatct 2761 tcacgatttc cctcgacgac gacgacgata cggacgagga tgagctgccc gccgccgccg 2821 ccgctgccga gacgcccatg ggcagcattt tcaagaagag cgatggcatt ccgggcctgg 2881 atttggtgga ggcggagcag ggagaatcta ccgaagctcc agtcgctgcc aacaagaatg 2941 aatccctgag caacgtccta aaagacccga atttcctcaa caatctcacc caggctgtgg 3001 ccaatgtcca ggagcgcgag cagcgcgatc gccagcagca gcagcagcag cagggacagg 3061 atgctcctcc ggatcaggag aggggcaaag atggacgccc actgtccttt gccgagtggc 3121 agcgcaagaa gaacggcggg aatgacaaca aatcgcagga ttcccgcgat tcaatgagtc 3181 ccagtgtggc ggagaagccg gaggcaggcg gaccaggtgg taataccaat ccgaatcctc 3241 gttctcgtcc aaattcggga ccaggtcatg gaccccccaa cgatggaccc cctcgctttg 3301 acaactttgg accgaaccaa gtgcccggcg gcaatttcat ggactttgag ggacccaatg 3361 gtcctggtcc tggttttggt ccgcccgggc ggaactttgg gccacgtgga cccaactttg 3421 gtcccggtcc gggtaacaac tttggacccg gaccctttgg acccggagga ccgcattttg 3481 gacccggtcc cgggccgaat ttccgcaaca atggccccaa ttttaatccc aactttggac 3541 cgaactttgg acccggaggt cctcgcaact ttggaccacg tggcggtccc tttggcggtc 3601 cgcgacgcga tgactttggt ggcccgcctt tcgggggacc caactttgga ccaggaggac 3661 ctggaggacc caaccagcgg ggattcaacg gaccaggagg accaggagga cccgcaccca 3721 acagtgataa tcccttccgc cggcagggcg gaccaccggg tcccaatttt ggcgacgatg 3781 atctgggcgc tgggccacca agaggaccca ggaatttccc caaccgcaac agcttcggaa 3841 atgcaggagg accgggaaat aaccaaaaca acaatcggaa caaaaactgg aatgatgggc 3901 cggagcaaca gcagcaacaa ttccccaaca acaacaacaa tagccaccca aacgagccca 3961 tctatcgacc gatgaaggtg ttcgactatt ccaataaccc acctgccgcc aaggtgatcg 4021 attatggcca caagtcgggc gacggaaacc ccatcgatgg gccttccggc ggaagtgcag 4081 tgcccgccga taggatgccg gatttcagac ccgtgaagac cttcgagtat ggccactcct 4141 cgaatcgcat gggaatgcca ggagtaatgg gaatgggaat gggaggaggt ccaaatcaag 4201 gaatgacagg tggaccagga ggaccgggag gaccaggagg accgggagga gctcctaata 4261 gcaagcgaaa gaataagaaa aagaacaaac agcaaaaaag ggaggagcgc attcagttcc 4321 atcaaaaccg acagttgcaa tcgattgcgg ttgacgagtg cacctcgtcg aatcccggac 4381 aggatgagca acagcagcag cagcagcaac aggcacagga tgagttccag gatcagggcg 4441 atgagtgccc atcaaataat gagcccaatg atctcgagga tatttccgat ggagaggaca 4501 atctaacgcc actggattgc gatgatgatg acaacgaagc tctgccgccg ccgccctcaa 4561 tgagccgctg gaatcaggga aatgcccccg agcagttcaa tcaaaatccc ttcaatccat 4621 ttcccgcccg tcaatttggc ggcggaattg atggatcggc tccgccgccg ccaaccatgt 4681 cactttttcc ctcggccgcc aatgcgaatg aaaaagtacc caatccggtg acgtccacgc 4741 atctggagat gtcggtgccg accagcgaga atcgcaatac catctccgtg gacgaggtgc 4801 ttatgaatcc cggccgccag acgcgtccca agcgcatctg catcattttg cgcggtcctc 4861 ccggctgcgg caagtcgcat gtggcgcgtc tcatcaagga aaaggagctg gaaatgggcg 4921 gtgccaatcc acggatcctg tccatcgatg actacttcat catcgagaac gactacgtgg 4981 agaagtgtcc caagacgggc aagaagatac ccaagaagga gatactgtac gagtacgacg 5041 acagcatgga ggagacctac atgcagtatc taatcaagtc cttcaagaag acgctcagtg 5101 ataatctgta cgattttata attgtggact gcaacaacaa ctcgctgcgc acactgaatg 5161 aattttattg ccacgccaaa gactcgaact ttgtgcccta catagtggat ctgcactgcg 5221 atctggagac atgcctcggc agaaactcgc atcagcgcac cgaggacgag atccgcgtgg 5281 tgctggacaa ctggtgcaac acgccgctgc agtacatcaa gctggacgtg agcacgctgc 5341 tcgagaacgt cgtcgagatg gaggatgtgg aggatatggc tacggacgat aatgcatgcg 5401 ccgacgatgg ggagaccgcg ggagcagcag cagcatccga ggatgcggct gtcgaggaga 5461 cggacgacag caatagcgcc gacgcctcca acgattgcgg cttcctgaaa agcaaatggg 5521 aatgtgacac caccgaggac aatctggccc gcttggatgg caccaagcgt ctaatgcaga 5581 accgccggac cgccagcatg gccgactatc tgcagctgga ggattgggaa ccacccagga 5641 cctcagccaa tggaaagaag cgcgttcgct gggcggatat cgaggagaag cgctcgcagg 5701 agaagatgcg agccatcggc tttgtggtgg gtcagaccga ctggaaccgc atgatggacc 5761 ccaatgcggg aagtcgggcc ctgaataaaa ccaagtacat cgagcgcatc aagcgtcgct 5821 agacgccaat tacagccacg caactgagac agacagaaaa aaaataacaa acaaaaaact 5881 cgcgtcattt ccactaacca aaacaaaaaa gcgcaggcca tttccatttc cacatacata 5941 ctatatgcat atggggaccg ccgtgcgcca acaaaaggct caaagacccc gaattacgtt 6001 taatcatcta tcatccaaat gctatcagta taatttcgca acaatcagtc atttttagta 6061 cggcatttac acaaacgaat attcaatttc gttcgaacca cacgaacatc cgcgatgaaa 6121 atcctagaaa aatagaataa atacgggtgt attttaattg taaattaaat caattcgctt 6181 ttagaaccga atgatgcacc cgacaatttt ttttagtttg acaaaatata cgagaatata 6241 tatatatata ta