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LOCUS XM_070219218 5102 bp mRNA linear INV 09-DEC-2024 X1, mRNA. ACCESSION XM_070219218 VERSION XM_070219218.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5102 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5102 /gene="wisp" /note="wispy; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056073" CDS 754..4707 /gene="wisp" /codon_start=1 /product="poly(A) RNA polymerase gld-2 homolog B" /protein_id="XP_070075319.1" /db_xref="GeneID:108056073" /translation="MFTTRITGEMKIFAADVAESSATAACNTPVQQQQQQLEFRSRMS NGSPGSKAGQCHLKFGKYNNKTANLLRQVNSCHSSNSGNNNSSSSNLSSSNSEANKGQ QQQQPLHYCNNSHSWARKKYFGNVSSSSSSSNNLQQQQQQQQSAYYQRQQQQQQQHQI QQQQDQQSLNNNNVLMKNQNSIQPLMPDCKSSDSNNNCSSSSNRMSAKPAKWLSDSNN SSSSNINTISTKKRNSSAAEVNAGYYRKVSESGNSVEAAAEMRETDAAAATATDACHN RSPSTAETTGRETSLAKTQDPEQDQTNQAKQRPRQQPLSFWKTNYPQPTASQLKDKET VAAVVSAAAAAASEQQQQQQQSLSFEHRRNSGYQQQHQQHNNYYQYYYSQPKQLTIAS FLQKELLPDSSGEKASSNSNSNSSSSNSNLISSNSNYSRQQYGHQSVGSGYQQRYRNA QSVYQQYQQQHHQAQQQHSHQQFRRKHGDNSNSSSNHGSGINQKKMHYSPTGKNGDPV ERSSRDPGQQQQQHHHLHHQQKTIEILASSNFNAMHRRMQGGNNNKNGYYQHNNYHPL AGESGTTPTRSEHQNIYNLTYVHVDMEASSSGAGGDATPVVKPSISITPAASSSAAAT TPTTVVAPPLPPPHPRNMFGPPPPPLVMQLHVSPVSTPTPTKMISCAQLDEAITSAAA TASGDQNLATSPGYNQAAAAGSFITIPPQQQQSSHPQPPPPPPPLPQMFHFHFAEGFC NPVAPPGPPHPPVWPHSGSPCYQVPAGTSPHNKDVSAAVGLRPVSPALSSSSLGSESH WSSRLSHGGHGSHGSHGSHLSISPTPSAQLSPHPLQLANHHGHPHGQMNGHAMSSYLP HRPPPPPHPHAAISSPTPGATGSAPWYELLLPPDRYLAQARNVEVAVQPEKLICMCKY DSLSAEIWKRFRAAQQTHKKFKVKMRLWRYLFLWMNQPMFERYRICLVGSTITGFGTD SSDIDMCLLPEQGAHPHQQQQQHYHQQHHHFHNEKRTEALIILTLFNAVLKDTEVFQD FNLIEARVPILRFKDVTNGIEVDLNFNNCVGIKNTYLLQLYAQLDWRTRPLVVIVKLW AQYHDINDAKRMTISSYSLVLMVLHYLQHACVPHVLPCLHTLYPEKFQLGQQDCLDLD LIEPIEPYQALNNQTLGEHLLGFFKYYSTFDFRNYAISIRTGGVLPVATCRMAKSPKN DVYQWKELNIEEPFDLSNTARSVYDYATFERVKGVFLASARRLDHTLDLATVFRPIRP PETFSQQQQQQLPYPNPGQQRSAGGGGGGGAAPMSSKLIPDAATTFAEATAANVA" misc_feature 3550..3969 /gene="wisp" /note="Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; Region: NT_PAP_TUTase; cd05402" /db_xref="CDD:143392" misc_feature order(3637..3645,3673..3678,3682..3684,3862..3867, 3871..3873,3877..3879,3910..3912,3931..3936,3943..3948) /gene="wisp" /note="active site" /db_xref="CDD:143392" misc_feature order(3637..3639,3862..3864,3871..3873,3877..3879, 3910..3912,3931..3936) /gene="wisp" /note="putative primer-binding pocket [active]" /db_xref="CDD:143392" misc_feature <3640..>4419 /gene="wisp" /note="DNA polymerase sigma [Replication, recombination and repair]; Region: TRF4; COG5260" /db_xref="CDD:227585" misc_feature order(3676..3678,3682..3684,3910..3912) /gene="wisp" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143392" polyA_site 5102 /gene="wisp" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cccgaatatt acggtagttg ctagctgatt tcagagcgtt tcaggcgcac ttttagttta 61 ttttttatga atgttagaat tgatgtggaa agtgtgtgtt gggctggaat atttttgaaa 121 aacggagcag tgcaaggaac gctcaacaag atataagcac cgtttttgtt ctttcttccc 181 gtttccgttt ttggttccgg gaaaattgca acgcccccgc attttgagca tattgccggg 241 ctcttttccc ctttttattt tgcccacatt gcgttgcaat ttcggggctc ttcgcatata 301 acggtccttt ttcaccgcct ctttcacaca caagaacggg ggaaagaaag aagagagaga 361 gagagaccgc gaaataatat acgtgtggaa ctacggtact tttacactgg tggccgtaaa 421 aagtgaaagt cagcctaaat atttaaaaat cctgaaatga aataaagtgt taataaagaa 481 ttagtaaagc ctaaaggtaa aaaagaaaac aaaacaaaaa aaaaataaaa attataaaaa 541 tacacaaaag acatcacaaa cataactaaa caaaaaccaa aaaaaaaaac tataaaataa 601 aaaacagaaa gttttcgaac tccaaaggaa actaaaaaaa taaaaaacat aatttaaacc 661 taacttaaat ctagcactaa gcagcgattc gtgccgagca attttttata cccaaaactc 721 gagccacgat agccccccaa ataaacaaac tctatgttca ccacccgaat aaccggcgaa 781 atgaagatct ttgccgccga tgttgccgag agcagcgcaa cagcggcatg caacacgccc 841 gtgcagcagc agcagcagca actcgagttc cgttcgcgaa tgtccaacgg atcgcccggt 901 tccaaagcgg gacaatgtca tctgaagttc ggcaagtaca acaacaagac ggccaatctg 961 ctgcgccagg taaacagttg tcacagcagc aacagcggca acaacaacag cagcagcagc 1021 aaccttagca gcagcaacag cgaggccaat aagggccagc aacagcaaca gccactgcac 1081 tattgcaaca acagtcactc gtgggcacgc aaaaaatact ttggcaacgt cagcagcagc 1141 agcagcagca gcaacaactt gcaacagcag caacaacagc agcaatctgc gtactaccag 1201 cgacagcagc agcagcagca gcaacaccag attcagcagc aacaggatca gcaatcttta 1261 aacaacaaca atgtgctgat gaagaatcaa aatagcatac aaccgctgat gccagattgc 1321 aagtccagcg acagcaacaa caactgcagc agcagcagca acagaatgtc ggcaaagcca 1381 gccaagtggc taagcgacag caacaacagc agcagcagca acatcaacac cattagtact 1441 aagaagcgca actcatcggc ggcagaggta aatgcaggat actatcgcaa ggtttcggaa 1501 tctggaaact ctgtggaagc tgcggccgag atgagggaaa cggatgcagc tgcagcaaca 1561 gcaacagatg cctgccacaa cagaagtcct tcgacagcag agaccactgg tagggaaacc 1621 tccttggcta agacccagga tccggaacag gatcagacaa atcaggcgaa acagcgaccc 1681 aggcagcaac ctctcagctt ctggaaaacc aattacccgc agccaaccgc cagccagctg 1741 aaagataagg agacggttgc agcagttgta tcagccgccg cagccgctgc ctccgaacag 1801 cagcagcagc agcagcagtc gttgtcgttc gaacaccggc gcaactcggg ctaccagcag 1861 caacaccagc agcacaacaa ctactatcaa tattactatt cacagcccaa gcagttgacc 1921 attgcctcgt tcctgcagaa ggaactgctg cccgatagta gcggcgaaaa ggccagtagc 1981 aacagcaaca gcaacagcag cagcagcaac agcaatctca tcagcagcaa cagcaactac 2041 tcacggcagc aatatggcca tcaatcggtg ggttctggct accagcagcg ctaccgcaat 2101 gctcagagtg tctaccagca ataccagcag cagcatcacc aagcacagca gcaacattcc 2161 catcagcagt tccgtcggaa gcacggcgac aacagcaaca gcagcagcaa ccatggtagt 2221 ggaatcaatc agaagaagat gcactacagc cccacgggaa agaatggtga tcccgtggag 2281 agatcctcga gagatcctgg acagcagcag cagcagcatc accatttaca ccaccagcag 2341 aagacaatcg agatcctggc cagcagcaac tttaatgcca tgcaccgtcg catgcagggc 2401 ggtaataata acaagaatgg ctactatcag cacaacaact atcatccgct ggcgggggaa 2461 agcggcacca cgcccactcg ttcggagcac cagaacatct acaatctcac ctacgtgcat 2521 gtggacatgg aggcatcatc ctcgggagca ggaggcgatg caacaccggt ggtcaagccg 2581 agcatttcca taacgccggc tgcctcttcc tcggcggcag ccaccacgcc aaccactgtg 2641 gttgctcctc cgcttccacc gccgcatcca cgtaacatgt ttgggccgcc accgccaccg 2701 ctggtaatgc agctacatgt ctcaccggtc agcacgccaa cgcccaccaa aatgatcagt 2761 tgtgcccagt tggacgaggc cattacgtcg gcggcggcga cggccagtgg tgaccagaac 2821 ttggccacga gtcctggcta caatcaggct gcagctgcgg gttcctttat aactattccg 2881 ccgcagcaac agcagtcgtc tcatccacag ccaccgccac cgccgccgcc gctgccgcag 2941 atgttccact ttcactttgc cgaggggttc tgcaatccgg tagctcctcc gggacctcct 3001 catccgcccg tttggccgca ttcaggttcg ccctgctacc aggtgccagc aggtacttct 3061 cctcataata aagatgtgag tgctgcggtt ggtttgcggc ccgtttcgcc agctctttcg 3121 tcctcctcgc tgggcagcga gtcgcattgg agcagtcgct tgagccacgg aggtcatgga 3181 agtcacggaa gccatggaag tcacctctcc atttcgccca ctcccagtgc tcagttgtcg 3241 ccgcatccgc tgcagctagc caaccaccat gggcatcccc atgggcagat gaatgggcat 3301 gcaatgagct cgtatttgcc gcaccgacca ccacctcctc cacatcctca tgcggccatc 3361 tcatcgccga cgccaggcgc cacaggttcg gctccctggt acgagctgct cctgccaccc 3421 gatcgctact tggcccaagc ccgcaacgtg gaggtggccg tccagccgga gaagctcatt 3481 tgcatgtgca agtacgatag cctgtcggcg gagatctgga agagattccg ggcagcccag 3541 cagacgcaca agaagttcaa ggtgaagatg cgtctctggc ggtacctctt cctctggatg 3601 aatcagccca tgtttgagcg gtaccgcatc tgcctggtgg gctcgaccat tacgggcttt 3661 ggcacggact cctcggacat cgacatgtgt ttgctgcccg agcagggggc acatcctcac 3721 cagcagcagc agcagcacta ccaccagcag caccaccact tccacaacga aaagcgcacc 3781 gaggcgctga tcatcctcac tttgttcaat gcggtcctga aggacacgga ggtcttccaa 3841 gacttcaatc tgatcgaggc gagagtgccg attttgcgct tcaaggacgt caccaatgga 3901 atcgaggtcg atctgaactt caacaactgc gtgggcatta aaaacaccta tctgcttcag 3961 ctctacgcac aactggattg gcggacacga ccgctggtgg tgattgtgaa gttgtgggcc 4021 cagtaccatg atatcaacga cgccaaacgc atgaccatat cgagctactc gctggtgcta 4081 atggtcctgc actatctgca gcacgcctgc gtgccccatg tgctgccctg cctgcacact 4141 ttgtatccgg agaagttcca gctgggccag caggattgcc ttgacctaga cctcatcgaa 4201 cccatcgagc cctaccaggc gctgaacaac cagacgctcg gcgagcacct gctgggcttc 4261 ttcaagtact acagcacctt tgacttccgg aactatgcca tctccatacg aactggcggc 4321 gtgctgccgg tggccacatg tcggatggcc aagagcccca agaacgatgt ctaccagtgg 4381 aaggagctca acatcgagga gcccttcgat ctgtccaata cggcacgatc cgtctacgat 4441 tatgcaacgt ttgagcgtgt gaagggtgtc tttctggcct cggcacgacg cctcgatcac 4501 accctcgatt tggccaccgt ctttcggccc attcgaccac ccgagacctt ttcccaacag 4561 cagcagcagc aactgcccta tccaaatccc ggccagcagc ggagtgcagg aggaggagga 4621 ggaggaggtg ccgctccaat gtccagcaaa ttgatcccag atgcagccac aacctttgcc 4681 gaagcgacgg cagcgaatgt cgcttagtta cttgcagaaa atatgaagaa aatcaaagga 4741 tatacaaaag aatgtccaag aatgttagag aatcaaaacg agaaacctac ctcataaatg 4801 aaaattcgag aggagcaaaa aacgagaaac caaaattgca atagaatttc catttgaatg 4861 cttgcctatc ttgttaaatg ttattatatt caactattta tacttttata cactcgattt 4921 gttttatcgg atcccaatta atcattgtaa acatccacgg aggttaaacg gtgtgcgatg 4981 ttcgtgtccc tcctcctgtg gcgtgtatgt agtatccttt tgaaaagcga aaatgtcacc 5041 cgaaaatgta aaattgcaag ttctgtaaaa taaagtaaca acaacagatg ttcccaatta 5101 aa