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PREDICTED: Drosophila takahashii forked end (fend), transcript


LOCUS       XM_070219188            2744 bp    mRNA    linear   INV 09-DEC-2024
            variant X4, mRNA.
ACCESSION   XM_070219188
VERSION     XM_070219188.1
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..2744
                     /gene="fend"
                     /note="forked end; Derived by automated computational
                     analysis using gene prediction method: Gnomon."
                     /db_xref="GeneID:108063894"
     CDS             611..1171
                     /gene="fend"
                     /codon_start=1
                     /product="transmembrane protein fend isoform X2"
                     /protein_id="XP_070075289.1"
                     /db_xref="GeneID:108063894"
                     /translation="MIANASRQCLITWEVSGGGLIGNLLTDTARAELSLWPDTVYNIQ
                     VKCKHKLTGLMRRSIKLNVDTTQLVGTTTTTTTRAPSTLRSQEQTSPSEDHPDPLMHS
                     QRVHIRPTDRVYIISALPTPSELGGVVYPAFGALAFFLALLVMFLFLRPQRKRFPLDA
                     DSADTATLIGRNSCSRNSLDASTLHV"
     polyA_site      2744
                     /gene="fend"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tgttttgaac agcttacaac ctaaactaac gattcccatc acttttagga aaatttaatt
       61 ttttttaacg taaatcgact cagatttaag ctacgagttc aacgaggtat gacattccgt
      121 attcgggcaa ttattttcct tgtttcggtt aaaaaactga aattttcggc gaaaaaataa
      181 actttttctt cagtttttta gtcgagatgc tctccagata tgacccttaa ttaggccacg
      241 tcatcgataa tgttaattaa atagatgatc gcctcagtgg gtacttataa ttctcaacta
      301 gttctagcta aaaatttacg acccaggtgt tatggtcgcc gataaatcag ttgaccggaa
      361 gttggtgtgg gtgttggtag ttgtgaattg acttcaggag actcacatat tgggatgtca
      421 tctggatgga actggactcc aagatgcagt gcatcgtgat cctgtccagc tttccaagga
      481 ctggcattat tgtaaggatt ccgttgattg cacaaactgc tgccaaaagc tggtggcacc
      541 ttttgaactg aggatcctga aggcccagcg ccaggaatcg ctcgtcctaa cagacatcgg
      601 ctgggacgag atgatagcca acgcctcgcg ccaatgcctc atcacctggg aggtctccgg
      661 cggcggcctg atcggcaatc tgctaacgga caccgcccgg gcggaactat ccctgtggcc
      721 agacaccgtc tacaacatcc aggtcaagtg caagcacaag ctcacgggcc tgatgagacg
      781 ttcgattaaa ctgaacgtgg acaccactca gttggtgggc acaaccacca cgaccacgac
      841 tagagctccg agcactctga ggagccagga gcagacatcg ccatccgagg accatccaga
      901 tcccttgatg cactcgcaac gcgttcacat ccgacccaca gatcgagtgt atataatcag
      961 tgccctgccc actcccagcg aactgggcgg agtggtgtat ccagccttcg gggcgctggc
     1021 cttcttcctg gccctgctgg tcatgtttct cttcctgcgc ccgcagcgga agcgcttccc
     1081 cctggatgcg gacagtgcgg acacggccac gttgataggt cggaactcat gctccaggaa
     1141 ctcactggac gcctccacgt tgcatgtcta aggaggcgaa acttgtagtc gtatatatat
     1201 agatgtctga ctatgtgata ttctgcaccc caaaaaaggg cccccaaagg gacgcgaaga
     1261 caactgtgta cataacctca ttaacgcgtt agttagaccc cccgcccatt cccgagatag
     1321 taaccccaga ttctgcggtt cgatataatg atagattaat cgaattggaa agaaagtcaa
     1381 gcaacgttcg ctcaactaag tttaagtttt atcgtctgcc attcgtagat cccaatgcca
     1441 aaccagcgca gtcatatata cacgcatgat taacgtacat agctctatat acatatacca
     1501 actatattat acacttaacg catttactat atacataata tatatcatag ttatacagac
     1561 gcagctaaag atacaagtgc agatcaagat gcagatacgt ttacggttac ggatataaat
     1621 atatatatat atatattata tattatatta ttacattata ttatattata ttatattata
     1681 ttatataata gactaggggc cagcggccaa ccaactacat acaccaaact aaatgcaaca
     1741 aattgctaca aattttttgt caatcgtcgt cgctcgcttg caaacataca aacaaacaaa
     1801 aaatcgaaat aacttgagat aaaaccaaat gaaaaccaat taatacaaat acaaaatatc
     1861 atgcatctct tttccatttt ttgtcgtctt taaacttaaa tgaaatatag ttcataaatg
     1921 gaaaaccaaa taaaacgaaa aaaaggaata aaaaccactt aaatcaaaag taaatatttt
     1981 tcaaaatttt taaatgttta tacctagaca aactcaattg aattaacaac aaagtaaact
     2041 attataactg acttactgta cttgagaatg taaaaacaaa gtaactaatt aaactaaacc
     2101 atggtaaata cggttaatta aagatctaag ctgagaaaac ttcgctacgc aaaatgcctg
     2161 taaatatttt agccctaatt tatttatatt taaagatcga ttgttttgtt aacctatgat
     2221 tttaaggagg ccccagaaaa atgaagggat ttccagggga aaaaatatgg tttcttaaat
     2281 tcaaagaatg taattttttt ttagaaaata aagaactact ttatatgatt aatggagtgt
     2341 tcctaatttt agtgtttcta atatgtaaaa aagtatgctt tcaatgtctg ctccaatggt
     2401 tgtagtatga attagtgtct ttcgatgtac ttcccaatcc attttaatga aacccaacca
     2461 atctttccca aaatggaatc tctggagtga gaactttgta gagtctgaac cgattgccat
     2521 atataataca gtcctagttt aattttagtt tttagatcca attgtgttac ctcttttttt
     2581 ctgtggcaaa gactcgttaa gactaaatat gccaatcaca ttttagatat atatactgtg
     2641 tatgaataaa ttcggagaga aggatggaag cggaagtgcg gtaccctttc aacatttatc
     2701 ctttattcgt ttattatgta aatataattt gatttgttat tgca