Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_070219175 5054 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_070219175 VERSION XM_070219175.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5054 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5054 /gene="sno" /note="strawberry notch; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108069586" CDS 38..4480 /gene="sno" /codon_start=1 /product="protein strawberry notch isoform X2" /protein_id="XP_070075276.1" /db_xref="GeneID:108069586" /translation="MGSPAARSSGNAGMTGGGSSAAGAAGSTSSYLNSLSTNELMNLA AYVAAKGSSAPPPPPPSTAANSVRSSPPGGHFFGGGAAASTSASAANFNMAASLLAQM SYAGGVQPIRAFKMAGNAGGGIVGNNQKPPMATTAGSGGGAAGGASAAGGGVKGNNSM MEAVQKLIAMNPEYLTSGIPNNVFQLFMQSMQQQRPQAPPAPMQPVVTSAAAAAAAAA AAAHASAAAYVQQEEDEVDYEEMGVAETYADYWPAKLKLGKKHPDAVVETASLSSVEP CDVYYKLSLPHETINSGHLSALQLESITYASQAHDHLLPDGSRAGFLIGDGAGVGKGR TIAGIIYENYLKGRKKALWISVSNDLKYDAERDLSDIGATRIDVHALNKFKYAKISSD VNNNCKRGVIFSTYSALIGESNNKTGKYRSRFRQLLQWCGEDFEGLIIFDECHKAKNL CPVGSGKPTKTGQTVLELQNKLPKARVVYASATGASEPKNMAYMVRLGLWGQGTAFGN FNDFITAVERRGVGAMEIVAMDMKLRGMYIARQLSFKGVSFKIEEVPLSKEFRKIYDQ SVELWVEAMQKFTEAAELIDAESRMKKTMWGQFWSSHQRFFKYLCIAAKVNHAVLVAR ESIKYGKCVVIGLQSTGEARTLDQLEKDDGELTDFVSTAKGVFQSFVERHFPAPDRNR INRILGLYDETPSLADSTSSLGNNSQSTTAAGKRKGSSNNNDNGSSAGGKSKKKKRSG SWQYSDSDDDDEGSKRNRNRNSDSDEANSDDDDLRSDMDDEDEDDEDQDVDSDRRSVA SDASSDFNPFFSGSDSDIDPWVNARSKKSTKKTQKKTKKKVKKEKEKGKKELASSSSA SSSTANDPSGSTTMSATVVAALNAAKNRKAQLSTQDKIQDLLQKKQELKGTVTPVGVN GVKLNYGPPPKDAIERACTMKEELLRKIERLGSRLPPNTLDQLIDELGGPDNVAEMTG RRGRVVQTDDGNIQYESRTESDVPLETLNITEKQRFMDGQKDVAIISEAASSGISLQS DRRVFNQRRRVHITLELPWSADRAIQQFGRTHRSNQVNAPEYIFLISDLAGERRFAST VAKRLESLGALTHGDRRATETRDLSQFNIDNKYGRQALETVMRTIMGYESPLVPPPTD YSGEFFKDIAGALVGVGIIVNSESHPGVLSLDKDYNNISKFLNRILGCPVDLQNRLFK YFTDTMTAIIQQAKRGGRFDLGIVDLGAAGENVTRCRLIRFVRKHATGVAPTEMHTVR VERGMIWQEAIDKYADLFNENEGFYLSHQLRNQKRTAIMVVILEHQPARNSSSTSSTT TDSDGGKKKKSRSKKEIMCQIYRPNTGLQVRHESLFELEKKYRKVGSEEAEPHWTEQY DASVNTCSHAYWNGNCRNVSLGNDCEVGLRQRLYHVLAGSVLSVWGRVEHILNTRSNS KMQVIRMKTTGDEKIVGTLIPKSCFEPLVADLRSDSEKQEEFNY" misc_feature 824..1732 /gene="sno" /note="P-loop containing NTP hydrolase pore-1; Region: AAA_34; pfam13872" /db_xref="CDD:464010" misc_feature 2891..3724 /gene="sno" /note="C-terminal domain on Strawberry notch homolog; Region: Helicase_C_4; pfam13871" /db_xref="CDD:464009" polyA_site 5054 /gene="sno" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttccgattt cctcctggac atcgtggtcc tttagccatg ggcagtccag cggccaggag 61 cagcggcaat gccgggatga ctggtggtgg gtcgtccgct gctggcgccg ctgggtccac 121 cagcagctat ttgaacagcc tcagcaccaa cgaactgatg aacctggccg cctacgtggc 181 cgccaagggt agcagcgccc cgccgcctcc gccgccgtcc acggccgcca attcggtgag 241 gagctcgccc cccggtggcc acttctttgg cggaggagcg gcggcctcca cttcagcctc 301 tgctgctaat ttcaatatgg ccgcgtcttt attggcgcag atgagttatg cgggcggagt 361 tcagcccatt cgcgccttca agatggccgg aaatgcagga ggaggaatcg ttggcaacaa 421 tcagaagcct ccgatggcca cgaccgcagg aagcggagga ggagcagcag gaggagcaag 481 tgcagccgga ggcggagtga agggcaacaa ctcgatgatg gaggccgtcc agaagctgat 541 cgccatgaat cccgaatacc tgaccagcgg cataccgaac aatgtattcc agctgttcat 601 gcagtcgatg cagcagcagc gtccccaggc gccacctgct cccatgcagc cggtggtcac 661 cagcgcagca gcagcagcgg cggcagcggc agcggcggcc cacgcttcgg cggcagccta 721 tgtgcagcag gaggaggacg aggtggacta cgaggagatg ggagtggccg agacctatgc 781 ggattactgg ccagccaagt tgaaactggg caagaagcac ccggatgccg tcgtggagac 841 cgcctccctg agctccgtgg agccctgcga cgtctactac aagctgtcgc tgccccacga 901 gacgataaac agcggccacc tgagcgccct gcagctggag tccatcacct acgcctcgca 961 ggcgcacgat cacctgctgc cggacggcag tcgggcgggc ttcctcatcg gcgacggagc 1021 cggcgtgggc aagggccgca ccattgccgg gatcatctac gagaactacc tgaaggggcg 1081 caagaaggcg ctgtggatat cggtgtccaa tgatctcaag tacgatgccg agcgggatct 1141 cagcgatatc ggggccacgc gcatcgatgt gcatgccctg aacaagttca agtacgccaa 1201 gatcagctcc gacgtgaaca acaactgcaa gcggggcgtg atcttcagca catattccgc 1261 cctgatcggc gagtcgaaca acaagacggg caagtaccga tcccgcttcc ggcagctgct 1321 gcagtggtgc ggcgaggact tcgagggcct gatcatcttc gacgagtgcc acaaggccaa 1381 gaacctgtgt cccgtgggct ccggcaagcc tacgaagacg ggccagacgg tcctcgagct 1441 gcagaacaag ctgcccaagg cgcgcgtggt ctatgcctcg gcgacgggcg cctcggagcc 1501 caagaatatg gcctatatgg tgcgactggg cctctgggga cagggcacgg cctttggcaa 1561 cttcaacgac ttcatcaccg ccgtagagag acgcggcgtg ggcgccatgg agatcgtggc 1621 catggacatg aagctgcgcg gcatgtacat cgcccgccag ctgagcttca agggcgtcag 1681 cttcaagatc gaggaggtgc cgctgtccaa ggagttccgc aagatctacg accagtcggt 1741 ggagctctgg gtggaggcca tgcagaagtt caccgaggcg gccgagctga tcgatgccga 1801 gagccgcatg aagaagacga tgtggggcca gttctggtcg tcgcaccagc gcttcttcaa 1861 gtacctctgc atagcggcca aggtcaatca cgcggtgctg gtggcccgcg agtccatcaa 1921 gtacggcaag tgcgtggtca tcggtctgca gtcgacgggc gaggcgcgca cgctggatca 1981 gctggagaag gacgatggcg agctgacgga ctttgtttcc acagcaaaag gcgtcttcca 2041 gtcgttcgtg gagcgccact ttccggcgcc cgatcgcaat cgcatcaatc gcattcttgg 2101 cctctacgac gagacgccct ccctggccga ttccacctcc agtctgggaa acaatagcca 2161 gagcacaacg gcggcgggca agcggaaggg cagcagcaac aacaatgaca acggctcctc 2221 ggcgggcggc aagagcaaga aaaagaagcg cagcggatcc tggcagtaca gcgacagcga 2281 cgacgacgac gagggcagca agcggaatcg gaatcgaaac agcgacagcg acgaggcaaa 2341 cagcgatgat gatgacctgc gcagtgatat ggacgacgag gacgaggacg atgaggatca 2401 ggacgtggac agcgatcggc ggagcgtggc cagcgatgcc agttccgatt tcaatccctt 2461 cttcagcggc agcgacagcg acattgatcc ctgggtgaat gcgcgcagca agaagtccac 2521 caagaagacg cagaagaaga ccaagaagaa ggtgaagaag gagaaggaga agggcaagaa 2581 ggagctggcc agcagctcgt cggcctcctc ctcgactgcc aacgatccga gtggcagtac 2641 gacgatgtcg gccaccgtgg tggccgctct gaatgcggct aagaaccgca aggcgcagct 2701 gtcgacgcag gacaagatcc aggatctgct gcagaagaag caggagctca agggcacggt 2761 gacgccggtg ggcgtgaacg gggtcaagct gaactacggg ccgccgccca aggatgccat 2821 cgagcgggcc tgcacgatga aggaggagct gctgcgaaag attgagcgtc tgggctcccg 2881 gctgccgccg aacaccttgg accagctgat cgacgagctg ggcggaccgg acaacgtggc 2941 cgagatgacg ggccgaaggg gtcgcgtggt gcagaccgac gatggaaaca tccagtacga 3001 gtcgcgaacc gagtcggatg tgccgctgga aacgctgaat atcacggaga agcagcgctt 3061 catggacggc cagaaggacg tggccattat ctcggaggcg gcgtccagcg gcatttcgct 3121 gcagagcgat cggcgggtct tcaaccagcg gcggcgcgtc cacatcaccc tggagctgcc 3181 ctggtccgcc gacagggcca tccagcagtt tggacgcacc catcgctcca atcaggtgaa 3241 tgcacccgag tacatcttcc tcatctcgga tctggctggc gaacggcgct tcgcctccac 3301 ggtggccaag cgcctggagt cgctgggcgc cctcacccac ggcgatcgcc gggccaccga 3361 gacgcgcgat ctctcccagt tcaacattga caacaagtac ggccggcaag ctctcgagac 3421 ggtgatgcgc accatcatgg gctacgagtc gccgctggtg ccgccgccca cggactacag 3481 cggcgagttc ttcaaggaca tcgctggagc tctggtcggc gtgggcataa tcgtgaacag 3541 cgagagccat ccgggcgtgc tcagtctgga caaggactac aacaacatat caaagtttct 3601 caatcgcatt ctcggttgtc cggtggattt gcagaatcgc ctgtttaagt acttcaccga 3661 caccatgacg gccatcatcc agcaggcgaa gcgcggcggt cgcttcgatc tgggcatagt 3721 ggatcttggc gctgccggcg agaatgtgac ccgctgccgg ctcattcggt tcgtgcgcaa 3781 acatgccacc ggcgtggcgc ccacagagat gcacacggtt cgcgtggagc gcggcatgat 3841 ctggcaggag gccattgata aatacgccga tctgttcaac gagaacgagg gcttctacct 3901 gtcccaccag ctgcgcaacc agaagcgaac cgccattatg gtggtgatcc tggagcacca 3961 gccagcgcgc aacagcagct cgacgagcag caccaccacc gattccgatg gcggcaagaa 4021 gaagaagtcg cgcagcaaaa aggagatcat gtgccagatc tacaggccaa acaccggtct 4081 tcaggtgcgc cacgagtcgc tgttcgagct ggagaagaag taccgcaagg tgggcagcga 4141 ggaggcggag ccccactgga cggagcagta cgatgcgtcg gtgaacacct gttcgcacgc 4201 ctactggaac ggcaactgcc ggaatgtcag cctgggcaac gattgtgagg tcggcttgag 4261 gcagcgcctg taccatgtgc tggccggctc cgtgctctcc gtgtggggac gcgtcgagca 4321 catactgaat acacgttcca atagcaagat gcaagtgata cgcatgaaga caaccgggga 4381 cgagaagatc gtgggcactc tgatacccaa gtcctgcttc gagccgttgg tggccgacct 4441 gcgcagcgac tcggagaagc aggaggagtt caactactga gttggagtgg cagttgtgtg 4501 atttagttat ggcttatggc tacacccttg agaccgcaat ccaatacccc ttccgcatct 4561 tccaaacttc tcaaccgagg ccaagcaata tttgaatcca cagcggatgg taggagggta 4621 ggatgctagg atgctaggat ggtagggagc acgataggct ttaacataat atatttaaat 4681 atattataat ataaatataa atactacgat atagataaac ctaacttaaa tacatagcgt 4741 atgtgtagaa ggacgtgaag tagtagggct cccggacagc agcaacacaa ttttttttgc 4801 cttaatttta aatagactta accatgtacc accaccccat ccatgatata aatcagactt 4861 tggctcgtca tagctcataa agaaccacac tcacataccg acataacgac acccgcgcaa 4921 cggaaatacg atgatatata gagaacgaaa tgaaaaacgc ttataaatgg acttttctca 4981 atgatttaaa gattaatttt agttacgccc taagttacac acacacacaa taaaccgcca 5041 cattttgtaa acta