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LOCUS XM_070219174 5814 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_070219174 VERSION XM_070219174.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5814 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5814 /gene="sno" /note="strawberry notch; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108069586" CDS 561..5240 /gene="sno" /codon_start=1 /product="protein strawberry notch isoform X1" /protein_id="XP_070075275.1" /db_xref="GeneID:108069586" /translation="MTSKKRKTLLDADDDDDNFEEDDSGSDFDDDEDPDQIEVPGGGR DLNTAVTYAQNIRSGVGVATKGGTPIPIPTGAKIVISNNNIKPISLLRINNNNNNNNN IITSVNSTTNSNGSNNNNTAVRQIITTTATKPTIVGGTSTVGGVALGGKITAIPIIPR KVAIENNLNNMPKKLNNAITVSYAGGVQPIRAFKMAGNAGGGIVGNNQKPPMATTAGS GGGAAGGASAAGGGVKGNNSMMEAVQKLIAMNPEYLTSGIPNNVFQLFMQSMQQQRPQ APPAPMQPVVTSAAAAAAAAAAAAHASAAAYVQQEEDEVDYEEMGVAETYADYWPAKL KLGKKHPDAVVETASLSSVEPCDVYYKLSLPHETINSGHLSALQLESITYASQAHDHL LPDGSRAGFLIGDGAGVGKGRTIAGIIYENYLKGRKKALWISVSNDLKYDAERDLSDI GATRIDVHALNKFKYAKISSDVNNNCKRGVIFSTYSALIGESNNKTGKYRSRFRQLLQ WCGEDFEGLIIFDECHKAKNLCPVGSGKPTKTGQTVLELQNKLPKARVVYASATGASE PKNMAYMVRLGLWGQGTAFGNFNDFITAVERRGVGAMEIVAMDMKLRGMYIARQLSFK GVSFKIEEVPLSKEFRKIYDQSVELWVEAMQKFTEAAELIDAESRMKKTMWGQFWSSH QRFFKYLCIAAKVNHAVLVARESIKYGKCVVIGLQSTGEARTLDQLEKDDGELTDFVS TAKGVFQSFVERHFPAPDRNRINRILGLYDETPSLADSTSSLGNNSQSTTAAGKRKGS SNNNDNGSSAGGKSKKKKRSGSWQYSDSDDDDEGSKRNRNRNSDSDEANSDDDDLRSD MDDEDEDDEDQDVDSDRRSVASDASSDFNPFFSGSDSDIDPWVNARSKKSTKKTQKKT KKKVKKEKEKGKKELASSSSASSSTANDPSGSTTMSATVVAALNAAKNRKAQLSTQDK IQDLLQKKQELKGTVTPVGVNGVKLNYGPPPKDAIERACTMKEELLRKIERLGSRLPP NTLDQLIDELGGPDNVAEMTGRRGRVVQTDDGNIQYESRTESDVPLETLNITEKQRFM DGQKDVAIISEAASSGISLQSDRRVFNQRRRVHITLELPWSADRAIQQFGRTHRSNQV NAPEYIFLISDLAGERRFASTVAKRLESLGALTHGDRRATETRDLSQFNIDNKYGRQA LETVMRTIMGYESPLVPPPTDYSGEFFKDIAGALVGVGIIVNSESHPGVLSLDKDYNN ISKFLNRILGCPVDLQNRLFKYFTDTMTAIIQQAKRGGRFDLGIVDLGAAGENVTRCR LIRFVRKHATGVAPTEMHTVRVERGMIWQEAIDKYADLFNENEGFYLSHQLRNQKRTA IMVVILEHQPARNSSSTSSTTTDSDGGKKKKSRSKKEIMCQIYRPNTGLQVRHESLFE LEKKYRKVGSEEAEPHWTEQYDASVNTCSHAYWNGNCRNVSLGNDCEVGLRQRLYHVL AGSVLSVWGRVEHILNTRSNSKMQVIRMKTTGDEKIVGTLIPKSCFEPLVADLRSDSE KQEEFNY" misc_feature 1584..2492 /gene="sno" /note="P-loop containing NTP hydrolase pore-1; Region: AAA_34; pfam13872" /db_xref="CDD:464010" misc_feature 3651..4484 /gene="sno" /note="C-terminal domain on Strawberry notch homolog; Region: Helicase_C_4; pfam13871" /db_xref="CDD:464009" polyA_site 5814 /gene="sno" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gaaagcaaca tttccatctg gcaacactgt gttacgtgtg cgtgtgtttt cggcttcctc 61 gcttccttct cgttctcgtt tccttcctcc ttgattccga ttccgagtgt tgttgcattt 121 tgcatcgagt gcagtgattg tgcgttgcag caacatccaa aatatccaaa gaggcgagac 181 ttcaaagcga atacaccgcg tgcagcaaca cacgcacaca cacatgcaca cacggccatt 241 atcgcaaagg cagcagcagc agcaacaaca acaacggcag ctctaacgcg ttgaaaacac 301 ttattgcgga gtattttttt ttttcgctgc atttgctgac tggctggccg cacaatcgtt 361 ctgttttcgc tgacggctcg aaaaaaggag aattctttct cgaaaataag gaaaaaacaa 421 cagcggcagc aacgacaaaa caaacaaaag ggcgaaaaac gcgtgtgtgc ttattttttg 481 tggttaacgg ttaacaacag ccagaattgg agtgacaaac gaaaacaaca acaagaacag 541 ttagcaattg gagcttcgaa atgacgtcga aaaaaagaaa aaccctgttg gacgccgatg 601 acgacgatga taatttcgaa gaggacgatt cgggctccga tttcgacgat gacgaggatc 661 cagatcaaat agaagtgccc ggaggtggtc gcgatctgaa taccgccgtt acctacgccc 721 aaaatatccg cagcggagtg ggcgtggcta ccaagggcgg tacacccatt cccataccca 781 caggcgccaa aattgttata agcaataaca atatcaagcc aatttcgttg ttgcgcatca 841 acaacaataa taacaataac aacaatataa ttaccagcgt taatagtaca acaaacagca 901 acggcagcaa caacaacaac acagccgtgc gtcagataat cacaacaaca gcaacaaaac 961 caaccatagt gggcggcacg tcaacggttg gaggcgtggc actgggcgga aagatcacag 1021 cgataccgat aatacccaga aaagtagcga tagagaataa tttaaacaat atgccaaaga 1081 aactgaataa cgcaataacg gtgagttatg cgggcggagt tcagcccatt cgcgccttca 1141 agatggccgg aaatgcagga ggaggaatcg ttggcaacaa tcagaagcct ccgatggcca 1201 cgaccgcagg aagcggagga ggagcagcag gaggagcaag tgcagccgga ggcggagtga 1261 agggcaacaa ctcgatgatg gaggccgtcc agaagctgat cgccatgaat cccgaatacc 1321 tgaccagcgg cataccgaac aatgtattcc agctgttcat gcagtcgatg cagcagcagc 1381 gtccccaggc gccacctgct cccatgcagc cggtggtcac cagcgcagca gcagcagcgg 1441 cggcagcggc agcggcggcc cacgcttcgg cggcagccta tgtgcagcag gaggaggacg 1501 aggtggacta cgaggagatg ggagtggccg agacctatgc ggattactgg ccagccaagt 1561 tgaaactggg caagaagcac ccggatgccg tcgtggagac cgcctccctg agctccgtgg 1621 agccctgcga cgtctactac aagctgtcgc tgccccacga gacgataaac agcggccacc 1681 tgagcgccct gcagctggag tccatcacct acgcctcgca ggcgcacgat cacctgctgc 1741 cggacggcag tcgggcgggc ttcctcatcg gcgacggagc cggcgtgggc aagggccgca 1801 ccattgccgg gatcatctac gagaactacc tgaaggggcg caagaaggcg ctgtggatat 1861 cggtgtccaa tgatctcaag tacgatgccg agcgggatct cagcgatatc ggggccacgc 1921 gcatcgatgt gcatgccctg aacaagttca agtacgccaa gatcagctcc gacgtgaaca 1981 acaactgcaa gcggggcgtg atcttcagca catattccgc cctgatcggc gagtcgaaca 2041 acaagacggg caagtaccga tcccgcttcc ggcagctgct gcagtggtgc ggcgaggact 2101 tcgagggcct gatcatcttc gacgagtgcc acaaggccaa gaacctgtgt cccgtgggct 2161 ccggcaagcc tacgaagacg ggccagacgg tcctcgagct gcagaacaag ctgcccaagg 2221 cgcgcgtggt ctatgcctcg gcgacgggcg cctcggagcc caagaatatg gcctatatgg 2281 tgcgactggg cctctgggga cagggcacgg cctttggcaa cttcaacgac ttcatcaccg 2341 ccgtagagag acgcggcgtg ggcgccatgg agatcgtggc catggacatg aagctgcgcg 2401 gcatgtacat cgcccgccag ctgagcttca agggcgtcag cttcaagatc gaggaggtgc 2461 cgctgtccaa ggagttccgc aagatctacg accagtcggt ggagctctgg gtggaggcca 2521 tgcagaagtt caccgaggcg gccgagctga tcgatgccga gagccgcatg aagaagacga 2581 tgtggggcca gttctggtcg tcgcaccagc gcttcttcaa gtacctctgc atagcggcca 2641 aggtcaatca cgcggtgctg gtggcccgcg agtccatcaa gtacggcaag tgcgtggtca 2701 tcggtctgca gtcgacgggc gaggcgcgca cgctggatca gctggagaag gacgatggcg 2761 agctgacgga ctttgtttcc acagcaaaag gcgtcttcca gtcgttcgtg gagcgccact 2821 ttccggcgcc cgatcgcaat cgcatcaatc gcattcttgg cctctacgac gagacgccct 2881 ccctggccga ttccacctcc agtctgggaa acaatagcca gagcacaacg gcggcgggca 2941 agcggaaggg cagcagcaac aacaatgaca acggctcctc ggcgggcggc aagagcaaga 3001 aaaagaagcg cagcggatcc tggcagtaca gcgacagcga cgacgacgac gagggcagca 3061 agcggaatcg gaatcgaaac agcgacagcg acgaggcaaa cagcgatgat gatgacctgc 3121 gcagtgatat ggacgacgag gacgaggacg atgaggatca ggacgtggac agcgatcggc 3181 ggagcgtggc cagcgatgcc agttccgatt tcaatccctt cttcagcggc agcgacagcg 3241 acattgatcc ctgggtgaat gcgcgcagca agaagtccac caagaagacg cagaagaaga 3301 ccaagaagaa ggtgaagaag gagaaggaga agggcaagaa ggagctggcc agcagctcgt 3361 cggcctcctc ctcgactgcc aacgatccga gtggcagtac gacgatgtcg gccaccgtgg 3421 tggccgctct gaatgcggct aagaaccgca aggcgcagct gtcgacgcag gacaagatcc 3481 aggatctgct gcagaagaag caggagctca agggcacggt gacgccggtg ggcgtgaacg 3541 gggtcaagct gaactacggg ccgccgccca aggatgccat cgagcgggcc tgcacgatga 3601 aggaggagct gctgcgaaag attgagcgtc tgggctcccg gctgccgccg aacaccttgg 3661 accagctgat cgacgagctg ggcggaccgg acaacgtggc cgagatgacg ggccgaaggg 3721 gtcgcgtggt gcagaccgac gatggaaaca tccagtacga gtcgcgaacc gagtcggatg 3781 tgccgctgga aacgctgaat atcacggaga agcagcgctt catggacggc cagaaggacg 3841 tggccattat ctcggaggcg gcgtccagcg gcatttcgct gcagagcgat cggcgggtct 3901 tcaaccagcg gcggcgcgtc cacatcaccc tggagctgcc ctggtccgcc gacagggcca 3961 tccagcagtt tggacgcacc catcgctcca atcaggtgaa tgcacccgag tacatcttcc 4021 tcatctcgga tctggctggc gaacggcgct tcgcctccac ggtggccaag cgcctggagt 4081 cgctgggcgc cctcacccac ggcgatcgcc gggccaccga gacgcgcgat ctctcccagt 4141 tcaacattga caacaagtac ggccggcaag ctctcgagac ggtgatgcgc accatcatgg 4201 gctacgagtc gccgctggtg ccgccgccca cggactacag cggcgagttc ttcaaggaca 4261 tcgctggagc tctggtcggc gtgggcataa tcgtgaacag cgagagccat ccgggcgtgc 4321 tcagtctgga caaggactac aacaacatat caaagtttct caatcgcatt ctcggttgtc 4381 cggtggattt gcagaatcgc ctgtttaagt acttcaccga caccatgacg gccatcatcc 4441 agcaggcgaa gcgcggcggt cgcttcgatc tgggcatagt ggatcttggc gctgccggcg 4501 agaatgtgac ccgctgccgg ctcattcggt tcgtgcgcaa acatgccacc ggcgtggcgc 4561 ccacagagat gcacacggtt cgcgtggagc gcggcatgat ctggcaggag gccattgata 4621 aatacgccga tctgttcaac gagaacgagg gcttctacct gtcccaccag ctgcgcaacc 4681 agaagcgaac cgccattatg gtggtgatcc tggagcacca gccagcgcgc aacagcagct 4741 cgacgagcag caccaccacc gattccgatg gcggcaagaa gaagaagtcg cgcagcaaaa 4801 aggagatcat gtgccagatc tacaggccaa acaccggtct tcaggtgcgc cacgagtcgc 4861 tgttcgagct ggagaagaag taccgcaagg tgggcagcga ggaggcggag ccccactgga 4921 cggagcagta cgatgcgtcg gtgaacacct gttcgcacgc ctactggaac ggcaactgcc 4981 ggaatgtcag cctgggcaac gattgtgagg tcggcttgag gcagcgcctg taccatgtgc 5041 tggccggctc cgtgctctcc gtgtggggac gcgtcgagca catactgaat acacgttcca 5101 atagcaagat gcaagtgata cgcatgaaga caaccgggga cgagaagatc gtgggcactc 5161 tgatacccaa gtcctgcttc gagccgttgg tggccgacct gcgcagcgac tcggagaagc 5221 aggaggagtt caactactga gttggagtgg cagttgtgtg atttagttat ggcttatggc 5281 tacacccttg agaccgcaat ccaatacccc ttccgcatct tccaaacttc tcaaccgagg 5341 ccaagcaata tttgaatcca cagcggatgg taggagggta ggatgctagg atgctaggat 5401 ggtagggagc acgataggct ttaacataat atatttaaat atattataat ataaatataa 5461 atactacgat atagataaac ctaacttaaa tacatagcgt atgtgtagaa ggacgtgaag 5521 tagtagggct cccggacagc agcaacacaa ttttttttgc cttaatttta aatagactta 5581 accatgtacc accaccccat ccatgatata aatcagactt tggctcgtca tagctcataa 5641 agaaccacac tcacataccg acataacgac acccgcgcaa cggaaatacg atgatatata 5701 gagaacgaaa tgaaaaacgc ttataaatgg acttttctca atgatttaaa gattaatttt 5761 agttacgccc taagttacac acacacacaa taaaccgcca cattttgtaa acta