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LOCUS XM_070219169 1669 bp mRNA linear INV 09-DEC-2024 factor-like (Traf-like), transcript variant X1, mRNA. ACCESSION XM_070219169 VERSION XM_070219169.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1669 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1669 /gene="Traf-like" /note="TNF-receptor-associated factor-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108063760" CDS 46..1500 /gene="Traf-like" /codon_start=1 /product="TNF receptor-associated factor 3 isoform X1" /protein_id="XP_070075270.1" /db_xref="GeneID:108063760" /translation="MVDDERVSQATSRKDLSRDSNQSHIPPIPANQTAKSTTIVKYEK SSCLFCNEWFDAQTFTEHLIHCGQVLEECPNGCQAFIPRIRMRSHQKECPRTSQQNQS QNHVNNRMSVSMDRLDRQSDQRLLVIEQDVGTIRSVLNEEIRQRLHLITDVGNIRKQN QVVEDWTRDTEKAMDELRHQMDEETRRRVFAIEQNQLDVQYCCDITQSLKEQVELRLD EAQKLVNQLSADVTVHQNQLNDNILKLEELIFENERLNREKFFQIEEFLQQINEDIKN KLGNSDYVTSKQATLDYEVKNVKNIVCETEERCDKLDRALHQTMQNLSDLETQMAMQQ RIASVQNIRGHLIWRIKDYSKKLDESKQYDTILHSSMFSNKAFSYALRLDIYLNGKGT WKGRNMIACLNVLSGEYDPLLAWPCRLQAEIIIRDQCSNPAEAEDYVKTIFVRKKSDD FIQSNQYFHIPHKVITSRNYLRNDSMFIEVRVLK" misc_feature <367..>1083 /gene="Traf-like" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 1075..1494 /gene="Traf-like" /note="MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane...; Region: MATH; cl02446" /db_xref="CDD:445786" misc_feature order(1246..1248,1402..1410) /gene="Traf-like" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:238168" polyA_site 1669 /gene="Traf-like" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gggagatcgt gaacgatttt agtggacatt tggtggctgt gttttatggt cgacgacgaa 61 agagttagcc aagcgacgtc gaggaaggat ctgtcgaggg actcgaacca gagccatatc 121 cccccaatac cagccaacca gacggccaag tcgacgacca tagtcaagta tgagaagtcc 181 tcgtgcctct tctgcaacga atggttcgat gcccagacat tcacggaaca cctgatccac 241 tgcggccagg tgctggagga gtgtcccaac ggctgtcagg ccttcatccc gcgcatccgg 301 atgagatcgc accagaagga gtgcccccga acgagtcagc agaaccagag ccagaaccac 361 gtgaacaatc ggatgagcgt cagcatggac cgtttggatc gacagtccga ccagcgcctc 421 ctagtcatcg agcaggatgt gggcaccatt cgatccgttc tcaacgagga gatccgccag 481 cgcctgcacc tgatcaccga tgtgggaaat atccggaagc agaaccaagt cgtcgaggac 541 tggacgcgcg acaccgagaa ggcgatggac gagctgcgcc accagatgga cgaggaaacc 601 aggcgcaggg tctttgccat cgaacagaac cagctggatg tccagtactg ctgtgatatc 661 acccagtcgt tgaaggagca agtcgagttg aggttggacg aggcacaaaa gttggttaat 721 caactctcag cggacgtgac cgttcaccag aatcagctga atgataatat cctcaagctg 781 gaagagctga tcttcgaaaa cgagaggctg aacagggaaa agttctttca gatcgaggaa 841 tttctgcagc agattaatga ggacatcaaa aacaaattgg gcaacagtga ttatgtcacc 901 tcgaagcagg caacactgga ctacgaggtt aagaatgtta agaacattgt gtgcgaaacc 961 gaagagcgtt gcgacaaatt ggatcgagcc cttcaccaga ccatgcagaa tttatcggat 1021 ttggagaccc aaatggccat gcagcagcgc atcgctagtg tgcagaatat aagaggccac 1081 ttgatttggc gcatcaagga ctactccaag aagttggacg agtcgaagca gtacgacacc 1141 attctccaca gctccatgtt ctccaataaa gcatttagct atgctcttcg gctggatata 1201 tacttgaacg gcaagggcac gtggaaggga cggaacatga tcgcctgctt gaacgtcctt 1261 tccggggagt acgatcccct tttggcctgg ccctgccgcc tccaggccga gatcatcatc 1321 cgggatcagt gctccaatcc ggcggaggcc gaggactatg tgaaaaccat atttgtgcgc 1381 aagaagagcg acgacttcat ccagagcaac cagtactttc atatacccca caaggtcatc 1441 accagtcgca actatcttcg caacgattcc atgttcattg aggtgcgagt cctcaagtga 1501 tatgcccact atattgacaa ggaaaaattc cattgattta atgcatacat atatataata 1561 atttattcca ttgagagcga gctagaagcc taaaaaaccc gcttacaaac acgagtagtg 1621 tatagtagtg tgtaagtgaa tacaaatcga tgcttggttt taatatgca