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LOCUS XM_070219149 3090 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_070219149 VERSION XM_070219149.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3090 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3090 /gene="Ubqn" /note="ubiquilin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108055220" CDS 233..1846 /gene="Ubqn" /codon_start=1 /product="ubiquilin-1" /protein_id="XP_070075250.1" /db_xref="GeneID:108055220" /translation="MAEGGSKRINVVVKTPKDKKTVEVDEDSGIKEFKILVAQKFEAE PEQLVLIFAGKIMKDTDTLKMHNIKDNLTVHLVIKAPTRNNEAPARQPADVRQTPFGL NQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPLVQQMMNNPDTMRQ LITSNPQMQDLMQRNPEISHMLNNPDLLRQTMELARNPSMLQELMRSHDRAMSNLESV PGGYSALQRIYRDIQEPMMNAATESFGRNPFAGLVDGGLGAGINPQQGTENRNPLPNP WGGGGGANSGTNGTGTANRTGDLPPNNVLNTPAMRSLLQQMADNPAMMQNLLNAPYTR SMMESMSQDPDMASRLLSSSPLLSNNPALQDQVRQMMPQFMAQMQNPEVQNMLTNPDA MNAILQIQQGMEQLRSAAPGLVGTLGIPPPPPGVGNTDADPASGDGGSTTNNASPNAA NPVPSLAPGGGPNAQLFNDFMMRMLNGMSNNADGTQPPEVRYQSQLEQLAAMGFGNRD ANLQALIATFGDINAAVERLLSLNQLSLS" misc_feature 251..469 /gene="Ubqn" /note="ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins; Region: Ubl_PLICs; cd01808" /db_xref="CDD:340506" misc_feature order(272..274,383..400,446..457,461..463,467..469) /gene="Ubqn" /note="Pru interaction site [polypeptide binding]; other site" /db_xref="CDD:340506" misc_feature order(362..364,371..373,383..385,389..400,404..406, 455..457,461..469) /gene="Ubqn" /note="putative S5a binding site; other site" /db_xref="CDD:340506" misc_feature 1703..1813 /gene="Ubqn" /note="UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins; Region: UBA_PLICs; cd14399" /db_xref="CDD:270582" misc_feature order(1733..1750,1796..1798,1805..1813) /gene="Ubqn" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270582" polyA_site 3090 /gene="Ubqn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtatgtgtgc gagcgaacgg gcgtgcgtgt gtgtgtgtgt gagtgagaaa gtgacgaatt 61 acttttcatc aaatgggaaa taatttagtt tgaaaacacg tatcccagcc agagcagccg 121 acgaaaaatt gcagttgtga cacaatttgg acaccccccc acccgaaaca cgagctaaat 181 cggcgcaggc aaagaccaga gacacggcga aggcgacaag aagagcagcg aaatggcgga 241 aggcggcagc aagcgcatca acgtggttgt gaaaacgcca aaggacaaga agacggtcga 301 ggttgacgaa gattctggaa taaaagagtt caaaattctg gtggcacaaa agttcgaggc 361 ggagcccgag cagctggtgc tcatcttcgc cgggaagatc atgaaggaca cggacaccct 421 gaagatgcac aacatcaagg acaacttgac ggttcatctg gtgatcaagg cgccgacgcg 481 caacaacgag gcgcccgccc gccagccggc ggatgtccgc cagacgccct ttggcctgaa 541 tcaattcggt ggcctggcgg gcatggaggc actgggtgcc ggatcgaata ccttcatgga 601 tctgcaggca cgcatgcaga acgagctgct caataatggc gatatgctgc gatctctgat 661 ggacaatccg ctggtgcagc agatgatgaa caatccggac acgatgcgcc agctgatcac 721 gtcgaatccg cagatgcagg atctgatgca gcgcaacccg gagatctcgc acatgctcaa 781 caatccggac ctgctgcgcc agacaatgga gctggcccgc aatccctcga tgctgcagga 841 gctgatgcgt tcgcacgatc gggccatgtc caatctggag tccgtgccgg gcggatatag 901 tgcgctgcag cggatctacc gcgacatcca ggagccgatg atgaacgccg ccaccgagtc 961 ctttggccgc aatccctttg ccggcctggt ggacggcggc ctgggcgctg ggatcaatcc 1021 gcagcagggc accgagaacc gcaacccgtt gccgaatccc tggggcggcg gtggaggtgc 1081 caattccggg acaaatggca caggcaccgc caatcgtact ggagatctgc cgcccaacaa 1141 tgtcctcaac acgccggcca tgcgcagcct gctccagcag atggccgaca atccggccat 1201 gatgcagaac ctcctgaacg ccccctacac gcgttccatg atggagtcca tgtcgcagga 1261 tccggacatg gcatcgcgcc tgctgagcag cagccccctg ctgtccaata atcccgctct 1321 gcaggatcag gtgcgccaga tgatgccgca gttcatggca cagatgcaga atcccgaggt 1381 gcagaacatg ctgaccaatc cggacgccat gaacgccatc ctgcagatcc agcagggcat 1441 ggagcagctg cgcagcgcgg ccccgggact cgttggcact ttgggcattc cgccgccgcc 1501 gccaggagtt ggcaacacgg atgcggatcc ggccagcggt gatggtggaa gcaccaccaa 1561 caatgcctca ccaaacgccg ctaatcccgt gcccagcttg gcaccgggtg gcggtccgaa 1621 tgcgcagctc ttcaacgact tcatgatgcg catgctcaac gggatgtcga acaacgcaga 1681 cggcacacag ccgcccgagg tgcgctacca gtcgcagctg gagcagctgg cggcgatggg 1741 cttcggcaac cgggatgcca atttgcaggc cctgatcgcc acctttgggg acatcaatgc 1801 ggctgtggag cgacttctgt ccctcaacca gctgtccctg agttaacaac gctaagccat 1861 ttccaaactg tacacaacct gtctatatat ctaccaacta catctatata tctaacacta 1921 tagccctgga gaacgcgaat gatacgatga taacgattga tgatgatgat gatgagaaag 1981 gggggaaaca cacacacaaa aattccatgc tgattgctta ttccccttat taagccggaa 2041 atatcttgaa tccttcatga ccatacaaca cacaaaacac acaacaaaaa taggagcctg 2101 gagaacggag agatattacg gatggatatg atagaagagc atagatagag atcgcatacc 2161 aaagtgtcgg cacttgcgta gttgatatca ttattttttt ttaattattt actttttcga 2221 gggctctaaa gcggaaaccc caattgaata tgcgccacga agcatatata ttatatatct 2281 ccagacaaaa cacacaattc cccaacagag acaacctaga atttcaataa atttccaaca 2341 ggttggtgct ctcccttgtc attattgatg taactatata tatatcgatg taaattccag 2401 ttgtgtgctt gaggaagaaa cgaacgaggt tctaaggata ctgggttttt tttttcattt 2461 ggctccccca tccgattccc cctccctttt ctcgccaagt gctacagtag atatcggcta 2521 tatgcaatgg aatatgtata caagcaatac gagtagtcaa aatggttatc gattcgttaa 2581 tacacctaag agtaatctcc cagcgttatc taaccttaag ccatccgttt aagagaatca 2641 aaatgtataa agttgcgcac tagcggtatc tactgtaggt ccacaagtgt gtacataggg 2701 tatatagtag gtacatccaa atattccatg gtgttgacaa aaaaaaagac gtgaaagcta 2761 tttaaaattc ctatttaaaa ctctaagcat ataaccgact ctttgggaac ttcttttgga 2821 tcttctgggg ttccgatccc tcaattcaca cacacacact ataatataaa agcgtatgag 2881 ttcaatgtat accctgtaag tactattacc atatatgcga ggagtatgca ggtgagccaa 2941 cttgaacggg ggaattgggt gggtgggcag aaactggagc tggaccgata cgtttatttg 3001 tttagtgaag gaagaaggaa gctaagtaat taaatgtaaa tgatcacatg ttttaaaaca 3061 gtaataaagc tactttggtt ttagattata