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LOCUS XM_070219136 5387 bp mRNA linear INV 09-DEC-2024 transcript variant X9, mRNA. ACCESSION XM_070219136 VERSION XM_070219136.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5387 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5387 /gene="rdgA" /note="retinal degeneration A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056060" CDS 527..4036 /gene="rdgA" /codon_start=1 /product="eye-specific diacylglycerol kinase isoform X6" /protein_id="XP_070075237.1" /db_xref="GeneID:108056060" /translation="MFISYLNCDASSNNSSYGYDNSSSNSNSNHNSSSSNISNTCNCS SSRDCNCNSDNCNNIPGSSQNSAASSNSNSNSNSIAESSGNCNICNDINSNSSNNSDC NYSNSVGRENCSCNCNICNNINSSNCSSSSNTPAAIFGMERLLHAVREEFQTEDEYEE TEVDVDDDDDEEHKLHRSSISSCCSSNSNSSSGSSNSDCSNTSALLPTPRRRLQRSDS FGSVGGGAVAGGVAGAAGAVGGAGVRRFRRSSIGMQRKSAFRQRKLDSLGAWRRKRRT ASASNSRRPIRIVPDWTENAVQGEHYWKPTSASGDLCCLNEECIKSGQRMKCSACQLV AHHNCIPFVNEKSTLACKPTYRDVGIRQYREQTTTHHHWVHRKLEKGKCKQCGKFFPM KQAVQSKLFGSKEIVALACAWCHEIYHNKEACFNQSKIGEECRLGNYAPIIVPPSWIV KLPSKGNFKSSIRVSNKNNAASGSGGGASGSGGGGGGGGGKSKKQTQRRQKGKEEKKE PRAFIVKPIPSPEVIPVIVFINPKSGGNQGHKLLGKFQHLLNPRQVFDLTQGGPKMGL DMFRKAPNLRVLACGGDGTVGWVLSVLDQIQPPLQPVPAVGVLPLGTGNDLARALGWG GGYTDEPIGKILREIGMSQCVLMDRWRVKVTPNDDVTDDHVDRSKANVPLNVINNYFS FGVDAHIALEFHEAREAHPERFNSRLRNKMYYGQMGGKDLILRQYRNLSQWVTLECDG QDFTGKLRDAGCHAVLFLNIPSYGGGTHPWNDSFGASKPSIDDGLMEVVGLTTYQLPM LQAGMHGTCICQCRKARIITKRTIPMQVDGEACRVKPSVIEIELLNKALMLSKRKHGR GDVQVNPLEKMQLNILRVTMQQYEQYHYDKEMLRKLANKLGQIEIESQCDLEHVRNML NTKFEESISYPKVSQDWCFIDSCTAEHYFRIDRAQEHLHYICDIAIDELYILDHEAAT MPQTPDQERSFAAFSQRQAQTERRQLDQAQGRGPGSTDEDLQIGSKPIKVMKWKSPIL EQTSDAILLAAQSGDLNMLRALHEQGYSLQSVNKNGQTALHFACKYNHRDIVKYIIAS ATRRLINMADKELGQTALHIAAEQNRRDICVMLVAAGAHLDTMDSGGNTPMMVAFNKN ANEIATYLESKQGTQPVDGWLDD" misc_feature 1412..1597 /gene="rdgA" /note="first protein kinase C conserved region 1 (C1 domain) found in type IV diacylglycerol kinases; Region: C1_DGK_typeIV_rpt1; cd20802" /db_xref="CDD:410352" misc_feature 1637..1837 /gene="rdgA" /note="second protein kinase C conserved region 1 (C1 domain) found in type IV diacylglycerol kinases; Region: C1_DGK_typeIV_rpt2; cd20855" /db_xref="CDD:410405" misc_feature 2102..2473 /gene="rdgA" /note="Diacylglycerol kinase catalytic domain (presumed); Region: DAGKc; smart00046" /db_xref="CDD:214487" misc_feature 2552..3016 /gene="rdgA" /note="Diacylglycerol kinase accessory domain (presumed); Region: DAGKa; smart00045" /db_xref="CDD:214486" misc_feature <3632..4003 /gene="rdgA" /note="Ankyrin repeat [Signal transduction mechanisms]; Region: ANKYR; COG0666" /db_xref="CDD:440430" misc_feature 3632..3715 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature order(3638..3643,3650..3658,3662..3667,3677..3679, 3686..3688,3713..3715,3719..3721,3725..3727,3737..3742, 3749..3757,3761..3766,3776..3778,3818..3820,3824..3826, 3833..3835,3845..3850,3857..3865,3869..3874,3884..3886, 3893..3895,3920..3922) /gene="rdgA" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293786" misc_feature 3719..3820 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 3824..3922 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" polyA_site 5387 /gene="rdgA" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttgccttgt gcggttggat gctgccgcca gccaaagaac ccccccaaaa aagaaacaga 61 aaatctagcc ccaataatga atagaatatt taataaaata acgcaaggta tcgcgggcgc 121 gcgtgtcgca aattaaaacg cgcatcggaa aagtcggaaa agtgcaataa aaatctctgg 181 gcaatctttt tgcgccataa tgacagccgc agcggacacg aaaacggaca gcagcagcag 241 aagtagattc cgattcggaa tcagaatcaa aatcagagtc acaaaaatcg ccaaccgaat 301 ggggatagga attgtgactg cgattgggag ctgaatgcaa ataagcgagc aaaaaatcgg 361 aaaatacaaa aaaaaaaaca gttccaaaaa aacggaaaaa atctacaaac cacagagcta 421 cgaatgtgta atgaagtgaa gtgaaatgta aaacgtgaga gaagcgaaac gagaaagcaa 481 ggtaaaaaag ggaacggatg tggaaaaata agtcactgta aagaccatgt tcatatctta 541 tttgaactgt gacgccagca gcaacaacag cagctacggt tacgacaaca gcagcagcaa 601 cagcaacagt aatcataaca gcagcagcag caacattagc aacacttgca attgcagcag 661 cagcagagat tgcaactgca acagcgataa ctgcaacaat atcccaggca gcagccaaaa 721 tagtgctgct agcagtaata gcaatagcaa tagcaacagt atcgcagaat ccagtggcaa 781 ttgcaatatc tgcaacgata tcaacagcaa cagcagcaac aacagcgatt gcaactatag 841 caacagtgtt ggcagagaga attgcagctg taattgcaat atctgcaaca atatcaacag 901 cagcaactgc agcagcagca gcaacacccc cgcagcaata ttcggaatgg agcgattgct 961 gcacgccgtt cgcgaggagt ttcaaacgga ggacgagtac gaggagaccg aggtggatgt 1021 ggatgatgat gatgatgagg agcataaact gcacaggagc agcatcagta gttgctgcag 1081 cagcaacagc aacagtagca gcggcagcag caacagcgac tgcagcaaca catcggcatt 1141 gctgccgacg ccaagacgtc gacttcagcg cagcgatagt tttggatctg ttgggggcgg 1201 tgctgtggca gggggcgtgg caggggctgc gggggcggtt gggggggccg gagtgcgacg 1261 ctttcgccgc tcctcaatcg gcatgcagcg gaagtcggcc ttccgccagc gaaaactcga 1321 ctccctgggg gcgtggcgcc ggaagaggcg taccgcttcg gccagcaatt cccggcgacc 1381 cattcgcatt gtgcccgact ggacggagaa tgcagtgcag ggcgagcact actggaagcc 1441 cacctcggcc tccggcgatc tttgctgcct gaacgaggag tgcattaaaa gcggtcagcg 1501 gatgaagtgc tccgcctgcc agctggtcgc gcaccacaac tgcattccgt ttgtgaacga 1561 gaagagcacg ctggcctgca agccgaccta ccgggatgtg ggcatccggc agtaccggga 1621 gcagacaacc acccaccacc attgggtgca ccgcaagctg gagaagggca agtgcaagca 1681 gtgcggcaag ttctttccta tgaagcaggc ggtgcaaagc aagctatttg ggtcgaagga 1741 aattgtggcg ttggcctgtg cgtggtgcca tgagatctac cacaacaagg aggcctgctt 1801 taaccagtcc aaaatcggcg aggagtgtcg tctgggcaac tatgcgccca tcattgtgcc 1861 gccttcgtgg attgtgaagc tgccgagcaa gggcaacttc aagtcctcga tacgcgtgag 1921 caacaagaac aatgccgcct cgggatcagg aggcggggcg agtggctcgg ggggcggagg 1981 aggtggcggt gggggaaaga gcaagaagca gacgcagcga cggcagaagg gcaaggagga 2041 aaagaaggag ccgcgggcgt tcattgtgaa gcccattccg tcgccggagg taatcccggt 2101 cattgtgttt attaatccaa agtcgggcgg caatcagggc cacaagctgc tgggcaagtt 2161 ccagcacctg ctcaatccgc gccaggtgtt cgatcttaca cagggtggtc ccaaaatggg 2221 ccttgatatg ttccgcaagg cgcccaattt gagggtcctg gcgtgcggag gcgacggcac 2281 cgtcggctgg gtcctttccg tcctggacca gatccaaccg ccgctccaac cagttccggc 2341 cgtcggtgtc cttcccttgg gcaccggcaa tgatctcgct cgcgccctcg gatggggagg 2401 gggctacacg gacgaaccga ttgggaagat attgcgcgag atcgggatgt cgcagtgcgt 2461 gctaatggac cgctggcggg tgaaggtcac gcccaacgat gacgtcaccg atgaccatgt 2521 cgaccgcagc aaagccaacg ttcccctgaa cgtcatcaac aactacttct cgttcggcgt 2581 ggacgcgcac atcgccctgg aattccacga ggcccgggag gcccatccgg agcgcttcaa 2641 ttcgcggctg cgcaacaaga tgtactacgg ccagatgggc ggcaaggatc tgatcctgcg 2701 ccaatatcgc aacctctcgc agtgggtgac gcttgagtgc gatggccagg actttaccgg 2761 aaaactccgc gacgccggct gccatgccgt gctattcctc aacattccca gctatggcgg 2821 tggcacccac ccgtggaacg actcctttgg cgcctcgaag ccctcgattg acgacggcct 2881 gatggaggtg gtgggtttga ccacctacca gctgcctatg ctgcaggcgg gcatgcacgg 2941 cacctgcatt tgccagtgcc gaaaggcccg gatcatcacc aagcggacca ttccgatgca 3001 ggtggacggg gaggcctgcc gcgtaaagcc ctcggtgatc gagatcgagc tgctgaacaa 3061 ggcgctgatg ctgtccaaaa ggaagcacgg ccgcggcgat gtccaggtaa atcccctgga 3121 gaaaatgcag ctgaacatct tgcgcgtcac catgcaacag tacgagcagt accactatga 3181 caaggagatg ctacgcaaat tggccaacaa actgggccaa atcgaaatcg aatctcagtg 3241 cgatttggag catgtgcgca atatgctcaa taccaagttc gaggaatcca tctcgtatcc 3301 gaaggtctcc caggattggt gctttatcga ctcctgcacc gcggagcact acttccgcat 3361 cgatcgtgcc caggagcacc tgcactacat ctgcgacatc gccatcgacg agctgtacat 3421 cctggaccac gaggcggcca ccatgccgca gactccggac caggagcgct ccttcgcggc 3481 cttctcgcag cggcaggcgc agacggagcg gcgccaactg gatcaggccc agggtcgcgg 3541 acccggcagc accgatgagg atttgcaaat tggctccaag cccattaaag tgatgaagtg 3601 gaagagccct atactggagc aaacttccga tgccatacta ctagcagccc agagcggcga 3661 tctcaatatg ttacgtgcac tacatgaaca aggatactca ctacagtcag tgaacaaaaa 3721 cggacagacg gcgttgcact tcgcctgcaa atacaaccac agggacattg tcaaatatat 3781 catcgcgagc gccacacgac gcctcatcaa catggccgac aaggagcttg gacagacggc 3841 gctccacatt gccgccgagc agaaccgtcg cgacatctgc gtgatgctgg tggccgcagg 3901 cgcccatctg gacaccatgg actccggcgg aaacacgccc atgatggtgg ccttcaacaa 3961 gaacgccaac gagatagcca cctatttgga aagtaagcag gggacgcagc ccgtcgatgg 4021 ctggctcgac gactaagtag caggtccccc ctccaagtag agcaatcgct agacaagctt 4081 acgccgtggg gctaactcac gacatccaga caacaaacaa aaacaaacca gacaaagcaa 4141 aattaaacca aaaaaagaaa agaaaaaatg attatcacaa taccagaaca tcagtaaaac 4201 agtaatccaa aacaagaatg tacttttaac actgcataaa tatttctcct ttctatgcca 4261 acaaaacaac aaccaacaac caaaatggac aatgtcttgt aaataactca acttacctaa 4321 tcgaatcaaa cgaaatccaa aaaaaaaatg gaactcaaat caaatcaaca ttccgaaaaa 4381 aaacaaaaaa caactcacat tggggttccg tttccgattt tgcacaggtc aagagcgctt 4441 tttgcatctg gaggtgcaga cccgagtcta aaagcaaaag aggagcattc ggcggaagca 4501 ttcaccccac gacaccctac atacatacat agataactaa taataataat aatgataatc 4561 gctttttttt ggcaactttt tttttgtgtt agcatgtacg agagaaatct aatttaagct 4621 aagcaaaaaa aaacacatac acagaagaac actcaaaaca acatttagcg actaagaatg 4681 gacaatggta tggattaact taatttattg taaggaaaag ttaggcagac gaaaggcaac 4741 atttgtccaa aatttaattc aattttcaat tacgaacaaa aaactaaaaa ctatttttaa 4801 aagaaggaaa ttcgaaattt atttgtttct cttaccgatt gattaacgat taatgattat 4861 attgtgatat ctaaattaat taatgtattg gactagagaa cgaaaacgag aaagagaacg 4921 agagcaaata gaaattgata ttagcgaggc aaaaaagttg aaagaacaaa aaaaaacaac 4981 aaaaaacaca ctgatccaca ctaagcaaaa atatatagcc tatatattta attaattata 5041 tatttaatta taccatatat tgtacttctt ttggaattca aactaggcta agtgagaact 5101 tgaatactct tcttcggcag agcagcagca cgattagaag agagacgcac tagaccctaa 5161 gcggctatgg ctctctcgct cagccacaga cacacacaca cacaccacac aaacacacac 5221 acacagtccc gatgcacaga ctaggatgca caacccccac tagatatacc acccactctt 5281 cacccacttc accccagaga aacaactaaa ccctcagcgt ttcaaaccga aagacttccc 5341 tcaaaaacga ggtcacctgc cccaaaaaaa aagaagaaaa agaaaaa