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LOCUS XM_070219135 5422 bp mRNA linear INV 09-DEC-2024 transcript variant X8, mRNA. ACCESSION XM_070219135 VERSION XM_070219135.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5422 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5422 /gene="rdgA" /note="retinal degeneration A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056060" CDS 562..4071 /gene="rdgA" /codon_start=1 /product="eye-specific diacylglycerol kinase isoform X6" /protein_id="XP_070075236.1" /db_xref="GeneID:108056060" /translation="MFISYLNCDASSNNSSYGYDNSSSNSNSNHNSSSSNISNTCNCS SSRDCNCNSDNCNNIPGSSQNSAASSNSNSNSNSIAESSGNCNICNDINSNSSNNSDC NYSNSVGRENCSCNCNICNNINSSNCSSSSNTPAAIFGMERLLHAVREEFQTEDEYEE TEVDVDDDDDEEHKLHRSSISSCCSSNSNSSSGSSNSDCSNTSALLPTPRRRLQRSDS FGSVGGGAVAGGVAGAAGAVGGAGVRRFRRSSIGMQRKSAFRQRKLDSLGAWRRKRRT ASASNSRRPIRIVPDWTENAVQGEHYWKPTSASGDLCCLNEECIKSGQRMKCSACQLV AHHNCIPFVNEKSTLACKPTYRDVGIRQYREQTTTHHHWVHRKLEKGKCKQCGKFFPM KQAVQSKLFGSKEIVALACAWCHEIYHNKEACFNQSKIGEECRLGNYAPIIVPPSWIV KLPSKGNFKSSIRVSNKNNAASGSGGGASGSGGGGGGGGGKSKKQTQRRQKGKEEKKE PRAFIVKPIPSPEVIPVIVFINPKSGGNQGHKLLGKFQHLLNPRQVFDLTQGGPKMGL DMFRKAPNLRVLACGGDGTVGWVLSVLDQIQPPLQPVPAVGVLPLGTGNDLARALGWG GGYTDEPIGKILREIGMSQCVLMDRWRVKVTPNDDVTDDHVDRSKANVPLNVINNYFS FGVDAHIALEFHEAREAHPERFNSRLRNKMYYGQMGGKDLILRQYRNLSQWVTLECDG QDFTGKLRDAGCHAVLFLNIPSYGGGTHPWNDSFGASKPSIDDGLMEVVGLTTYQLPM LQAGMHGTCICQCRKARIITKRTIPMQVDGEACRVKPSVIEIELLNKALMLSKRKHGR GDVQVNPLEKMQLNILRVTMQQYEQYHYDKEMLRKLANKLGQIEIESQCDLEHVRNML NTKFEESISYPKVSQDWCFIDSCTAEHYFRIDRAQEHLHYICDIAIDELYILDHEAAT MPQTPDQERSFAAFSQRQAQTERRQLDQAQGRGPGSTDEDLQIGSKPIKVMKWKSPIL EQTSDAILLAAQSGDLNMLRALHEQGYSLQSVNKNGQTALHFACKYNHRDIVKYIIAS ATRRLINMADKELGQTALHIAAEQNRRDICVMLVAAGAHLDTMDSGGNTPMMVAFNKN ANEIATYLESKQGTQPVDGWLDD" misc_feature 1447..1632 /gene="rdgA" /note="first protein kinase C conserved region 1 (C1 domain) found in type IV diacylglycerol kinases; Region: C1_DGK_typeIV_rpt1; cd20802" /db_xref="CDD:410352" misc_feature 1672..1872 /gene="rdgA" /note="second protein kinase C conserved region 1 (C1 domain) found in type IV diacylglycerol kinases; Region: C1_DGK_typeIV_rpt2; cd20855" /db_xref="CDD:410405" misc_feature 2137..2508 /gene="rdgA" /note="Diacylglycerol kinase catalytic domain (presumed); Region: DAGKc; smart00046" /db_xref="CDD:214487" misc_feature 2587..3051 /gene="rdgA" /note="Diacylglycerol kinase accessory domain (presumed); Region: DAGKa; smart00045" /db_xref="CDD:214486" misc_feature <3667..4038 /gene="rdgA" /note="Ankyrin repeat [Signal transduction mechanisms]; Region: ANKYR; COG0666" /db_xref="CDD:440430" misc_feature 3667..3750 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature order(3673..3678,3685..3693,3697..3702,3712..3714, 3721..3723,3748..3750,3754..3756,3760..3762,3772..3777, 3784..3792,3796..3801,3811..3813,3853..3855,3859..3861, 3868..3870,3880..3885,3892..3900,3904..3909,3919..3921, 3928..3930,3955..3957) /gene="rdgA" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293786" misc_feature 3754..3855 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 3859..3957 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" polyA_site 5422 /gene="rdgA" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttgccttgt gcggttggat gctgccgcca gccaaagaac ccccccaaaa aagaaacaga 61 aaatctagcc ccaataatga atagaatatt taataaaata acgcaaggta tcgcgggcgc 121 gcgtgtcgca aattaaaacg cgcatcggaa aagtcggaaa agtgcaataa agtgtgtagc 181 ccaaaaaata acaaaagaga ataaaaaatc tctgggcaat ctttttgcgc cataatgaca 241 gccgcagcgg acacgaaaac ggacagcagc agcagaagta gattccgatt cggaatcaga 301 atcaaaatca gagtcacaaa aatcgccaac cgaatgggga taggaattgt gactgcgatt 361 gggagctgaa tgcaaataag cgagcaaaaa atcggaaaat acaaaaaaaa aaacagttcc 421 aaaaaaacgg aaaaaatcta caaaccacag agctacgaat gtgtaatgaa gtgaagtgaa 481 atgtaaaacg tgagagaagc gaaacgagaa agcaaggtaa aaaagggaac ggatgtggaa 541 aaataagtca ctgtaaagac catgttcata tcttatttga actgtgacgc cagcagcaac 601 aacagcagct acggttacga caacagcagc agcaacagca acagtaatca taacagcagc 661 agcagcaaca ttagcaacac ttgcaattgc agcagcagca gagattgcaa ctgcaacagc 721 gataactgca acaatatccc aggcagcagc caaaatagtg ctgctagcag taatagcaat 781 agcaatagca acagtatcgc agaatccagt ggcaattgca atatctgcaa cgatatcaac 841 agcaacagca gcaacaacag cgattgcaac tatagcaaca gtgttggcag agagaattgc 901 agctgtaatt gcaatatctg caacaatatc aacagcagca actgcagcag cagcagcaac 961 acccccgcag caatattcgg aatggagcga ttgctgcacg ccgttcgcga ggagtttcaa 1021 acggaggacg agtacgagga gaccgaggtg gatgtggatg atgatgatga tgaggagcat 1081 aaactgcaca ggagcagcat cagtagttgc tgcagcagca acagcaacag tagcagcggc 1141 agcagcaaca gcgactgcag caacacatcg gcattgctgc cgacgccaag acgtcgactt 1201 cagcgcagcg atagttttgg atctgttggg ggcggtgctg tggcaggggg cgtggcaggg 1261 gctgcggggg cggttggggg ggccggagtg cgacgctttc gccgctcctc aatcggcatg 1321 cagcggaagt cggccttccg ccagcgaaaa ctcgactccc tgggggcgtg gcgccggaag 1381 aggcgtaccg cttcggccag caattcccgg cgacccattc gcattgtgcc cgactggacg 1441 gagaatgcag tgcagggcga gcactactgg aagcccacct cggcctccgg cgatctttgc 1501 tgcctgaacg aggagtgcat taaaagcggt cagcggatga agtgctccgc ctgccagctg 1561 gtcgcgcacc acaactgcat tccgtttgtg aacgagaaga gcacgctggc ctgcaagccg 1621 acctaccggg atgtgggcat ccggcagtac cgggagcaga caaccaccca ccaccattgg 1681 gtgcaccgca agctggagaa gggcaagtgc aagcagtgcg gcaagttctt tcctatgaag 1741 caggcggtgc aaagcaagct atttgggtcg aaggaaattg tggcgttggc ctgtgcgtgg 1801 tgccatgaga tctaccacaa caaggaggcc tgctttaacc agtccaaaat cggcgaggag 1861 tgtcgtctgg gcaactatgc gcccatcatt gtgccgcctt cgtggattgt gaagctgccg 1921 agcaagggca acttcaagtc ctcgatacgc gtgagcaaca agaacaatgc cgcctcggga 1981 tcaggaggcg gggcgagtgg ctcggggggc ggaggaggtg gcggtggggg aaagagcaag 2041 aagcagacgc agcgacggca gaagggcaag gaggaaaaga aggagccgcg ggcgttcatt 2101 gtgaagccca ttccgtcgcc ggaggtaatc ccggtcattg tgtttattaa tccaaagtcg 2161 ggcggcaatc agggccacaa gctgctgggc aagttccagc acctgctcaa tccgcgccag 2221 gtgttcgatc ttacacaggg tggtcccaaa atgggccttg atatgttccg caaggcgccc 2281 aatttgaggg tcctggcgtg cggaggcgac ggcaccgtcg gctgggtcct ttccgtcctg 2341 gaccagatcc aaccgccgct ccaaccagtt ccggccgtcg gtgtccttcc cttgggcacc 2401 ggcaatgatc tcgctcgcgc cctcggatgg ggagggggct acacggacga accgattggg 2461 aagatattgc gcgagatcgg gatgtcgcag tgcgtgctaa tggaccgctg gcgggtgaag 2521 gtcacgccca acgatgacgt caccgatgac catgtcgacc gcagcaaagc caacgttccc 2581 ctgaacgtca tcaacaacta cttctcgttc ggcgtggacg cgcacatcgc cctggaattc 2641 cacgaggccc gggaggccca tccggagcgc ttcaattcgc ggctgcgcaa caagatgtac 2701 tacggccaga tgggcggcaa ggatctgatc ctgcgccaat atcgcaacct ctcgcagtgg 2761 gtgacgcttg agtgcgatgg ccaggacttt accggaaaac tccgcgacgc cggctgccat 2821 gccgtgctat tcctcaacat tcccagctat ggcggtggca cccacccgtg gaacgactcc 2881 tttggcgcct cgaagccctc gattgacgac ggcctgatgg aggtggtggg tttgaccacc 2941 taccagctgc ctatgctgca ggcgggcatg cacggcacct gcatttgcca gtgccgaaag 3001 gcccggatca tcaccaagcg gaccattccg atgcaggtgg acggggaggc ctgccgcgta 3061 aagccctcgg tgatcgagat cgagctgctg aacaaggcgc tgatgctgtc caaaaggaag 3121 cacggccgcg gcgatgtcca ggtaaatccc ctggagaaaa tgcagctgaa catcttgcgc 3181 gtcaccatgc aacagtacga gcagtaccac tatgacaagg agatgctacg caaattggcc 3241 aacaaactgg gccaaatcga aatcgaatct cagtgcgatt tggagcatgt gcgcaatatg 3301 ctcaatacca agttcgagga atccatctcg tatccgaagg tctcccagga ttggtgcttt 3361 atcgactcct gcaccgcgga gcactacttc cgcatcgatc gtgcccagga gcacctgcac 3421 tacatctgcg acatcgccat cgacgagctg tacatcctgg accacgaggc ggccaccatg 3481 ccgcagactc cggaccagga gcgctccttc gcggccttct cgcagcggca ggcgcagacg 3541 gagcggcgcc aactggatca ggcccagggt cgcggacccg gcagcaccga tgaggatttg 3601 caaattggct ccaagcccat taaagtgatg aagtggaaga gccctatact ggagcaaact 3661 tccgatgcca tactactagc agcccagagc ggcgatctca atatgttacg tgcactacat 3721 gaacaaggat actcactaca gtcagtgaac aaaaacggac agacggcgtt gcacttcgcc 3781 tgcaaataca accacaggga cattgtcaaa tatatcatcg cgagcgccac acgacgcctc 3841 atcaacatgg ccgacaagga gcttggacag acggcgctcc acattgccgc cgagcagaac 3901 cgtcgcgaca tctgcgtgat gctggtggcc gcaggcgccc atctggacac catggactcc 3961 ggcggaaaca cgcccatgat ggtggccttc aacaagaacg ccaacgagat agccacctat 4021 ttggaaagta agcaggggac gcagcccgtc gatggctggc tcgacgacta agtagcaggt 4081 cccccctcca agtagagcaa tcgctagaca agcttacgcc gtggggctaa ctcacgacat 4141 ccagacaaca aacaaaaaca aaccagacaa agcaaaatta aaccaaaaaa agaaaagaaa 4201 aaatgattat cacaatacca gaacatcagt aaaacagtaa tccaaaacaa gaatgtactt 4261 ttaacactgc ataaatattt ctcctttcta tgccaacaaa acaacaacca acaaccaaaa 4321 tggacaatgt cttgtaaata actcaactta cctaatcgaa tcaaacgaaa tccaaaaaaa 4381 aaatggaact caaatcaaat caacattccg aaaaaaaaca aaaaacaact cacattgggg 4441 ttccgtttcc gattttgcac aggtcaagag cgctttttgc atctggaggt gcagacccga 4501 gtctaaaagc aaaagaggag cattcggcgg aagcattcac cccacgacac cctacataca 4561 tacatagata actaataata ataataatga taatcgcttt tttttggcaa cttttttttt 4621 gtgttagcat gtacgagaga aatctaattt aagctaagca aaaaaaaaca catacacaga 4681 agaacactca aaacaacatt tagcgactaa gaatggacaa tggtatggat taacttaatt 4741 tattgtaagg aaaagttagg cagacgaaag gcaacatttg tccaaaattt aattcaattt 4801 tcaattacga acaaaaaact aaaaactatt tttaaaagaa ggaaattcga aatttatttg 4861 tttctcttac cgattgatta acgattaatg attatattgt gatatctaaa ttaattaatg 4921 tattggacta gagaacgaaa acgagaaaga gaacgagagc aaatagaaat tgatattagc 4981 gaggcaaaaa agttgaaaga acaaaaaaaa acaacaaaaa acacactgat ccacactaag 5041 caaaaatata tagcctatat atttaattaa ttatatattt aattatacca tatattgtac 5101 ttcttttgga attcaaacta ggctaagtga gaacttgaat actcttcttc ggcagagcag 5161 cagcacgatt agaagagaga cgcactagac cctaagcggc tatggctctc tcgctcagcc 5221 acagacacac acacacacac cacacaaaca cacacacaca gtcccgatgc acagactagg 5281 atgcacaacc cccactagat ataccaccca ctcttcaccc acttcacccc agagaaacaa 5341 ctaaaccctc agcgtttcaa accgaaagac ttccctcaaa aacgaggtca cctgccccaa 5401 aaaaaaagaa gaaaaagaaa aa