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LOCUS XM_070219134 5673 bp mRNA linear INV 09-DEC-2024 transcript variant X7, mRNA. ACCESSION XM_070219134 VERSION XM_070219134.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5673 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5673 /gene="rdgA" /note="retinal degeneration A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056060" CDS 813..4322 /gene="rdgA" /codon_start=1 /product="eye-specific diacylglycerol kinase isoform X6" /protein_id="XP_070075235.1" /db_xref="GeneID:108056060" /translation="MFISYLNCDASSNNSSYGYDNSSSNSNSNHNSSSSNISNTCNCS SSRDCNCNSDNCNNIPGSSQNSAASSNSNSNSNSIAESSGNCNICNDINSNSSNNSDC NYSNSVGRENCSCNCNICNNINSSNCSSSSNTPAAIFGMERLLHAVREEFQTEDEYEE TEVDVDDDDDEEHKLHRSSISSCCSSNSNSSSGSSNSDCSNTSALLPTPRRRLQRSDS FGSVGGGAVAGGVAGAAGAVGGAGVRRFRRSSIGMQRKSAFRQRKLDSLGAWRRKRRT ASASNSRRPIRIVPDWTENAVQGEHYWKPTSASGDLCCLNEECIKSGQRMKCSACQLV AHHNCIPFVNEKSTLACKPTYRDVGIRQYREQTTTHHHWVHRKLEKGKCKQCGKFFPM KQAVQSKLFGSKEIVALACAWCHEIYHNKEACFNQSKIGEECRLGNYAPIIVPPSWIV KLPSKGNFKSSIRVSNKNNAASGSGGGASGSGGGGGGGGGKSKKQTQRRQKGKEEKKE PRAFIVKPIPSPEVIPVIVFINPKSGGNQGHKLLGKFQHLLNPRQVFDLTQGGPKMGL DMFRKAPNLRVLACGGDGTVGWVLSVLDQIQPPLQPVPAVGVLPLGTGNDLARALGWG GGYTDEPIGKILREIGMSQCVLMDRWRVKVTPNDDVTDDHVDRSKANVPLNVINNYFS FGVDAHIALEFHEAREAHPERFNSRLRNKMYYGQMGGKDLILRQYRNLSQWVTLECDG QDFTGKLRDAGCHAVLFLNIPSYGGGTHPWNDSFGASKPSIDDGLMEVVGLTTYQLPM LQAGMHGTCICQCRKARIITKRTIPMQVDGEACRVKPSVIEIELLNKALMLSKRKHGR GDVQVNPLEKMQLNILRVTMQQYEQYHYDKEMLRKLANKLGQIEIESQCDLEHVRNML NTKFEESISYPKVSQDWCFIDSCTAEHYFRIDRAQEHLHYICDIAIDELYILDHEAAT MPQTPDQERSFAAFSQRQAQTERRQLDQAQGRGPGSTDEDLQIGSKPIKVMKWKSPIL EQTSDAILLAAQSGDLNMLRALHEQGYSLQSVNKNGQTALHFACKYNHRDIVKYIIAS ATRRLINMADKELGQTALHIAAEQNRRDICVMLVAAGAHLDTMDSGGNTPMMVAFNKN ANEIATYLESKQGTQPVDGWLDD" misc_feature 1698..1883 /gene="rdgA" /note="first protein kinase C conserved region 1 (C1 domain) found in type IV diacylglycerol kinases; Region: C1_DGK_typeIV_rpt1; cd20802" /db_xref="CDD:410352" misc_feature 1923..2123 /gene="rdgA" /note="second protein kinase C conserved region 1 (C1 domain) found in type IV diacylglycerol kinases; Region: C1_DGK_typeIV_rpt2; cd20855" /db_xref="CDD:410405" misc_feature 2388..2759 /gene="rdgA" /note="Diacylglycerol kinase catalytic domain (presumed); Region: DAGKc; smart00046" /db_xref="CDD:214487" misc_feature 2838..3302 /gene="rdgA" /note="Diacylglycerol kinase accessory domain (presumed); Region: DAGKa; smart00045" /db_xref="CDD:214486" misc_feature <3918..4289 /gene="rdgA" /note="Ankyrin repeat [Signal transduction mechanisms]; Region: ANKYR; COG0666" /db_xref="CDD:440430" misc_feature 3918..4001 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature order(3924..3929,3936..3944,3948..3953,3963..3965, 3972..3974,3999..4001,4005..4007,4011..4013,4023..4028, 4035..4043,4047..4052,4062..4064,4104..4106,4110..4112, 4119..4121,4131..4136,4143..4151,4155..4160,4170..4172, 4179..4181,4206..4208) /gene="rdgA" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293786" misc_feature 4005..4106 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 4110..4208 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" polyA_site 5673 /gene="rdgA" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttgccttgt gcggttggat gctgccgcca gccaaagaac ccccccaaaa aagaaacaga 61 aaatctagcc ccaataatga atagaatatt taataaaata acgcaaggta tcgcgggcgc 121 gcgtgtcgca aattaaaacg cgcatcggaa aagtcggaaa agtgcaataa agtgtgtagc 181 ccaaaaaata acaaaagaga ataaaagtaa aacagtggag agcggaagaa tcaaaacaaa 241 gcccaaaaca aaagggtcaa aacgatgtca attaggccta aaaataaccg aataaccggt 301 cacaaaaata aaacaattct taattgacga cgaacgggga ggaaattgtg aaatttcaat 361 tcaattaacc gatgaacttg aaaagcaaaa aagcgaaaaa agcagagagg cagaaaagca 421 gaaaaccgaa atgccggaga agcatcaccg atataaaaat ctctgggcaa tctttttgcg 481 ccataatgac agccgcagcg gacacgaaaa cggacagcag cagcagaagt agattccgat 541 tcggaatcag aatcaaaatc agagtcacaa aaatcgccaa ccgaatgggg ataggaattg 601 tgactgcgat tgggagctga atgcaaataa gcgagcaaaa aatcggaaaa tacaaaaaaa 661 aaaacagttc caaaaaaacg gaaaaaatct acaaaccaca gagctacgaa tgtgtaatga 721 agtgaagtga aatgtaaaac gtgagagaag cgaaacgaga aagcaaggta aaaaagggaa 781 cggatgtgga aaaataagtc actgtaaaga ccatgttcat atcttatttg aactgtgacg 841 ccagcagcaa caacagcagc tacggttacg acaacagcag cagcaacagc aacagtaatc 901 ataacagcag cagcagcaac attagcaaca cttgcaattg cagcagcagc agagattgca 961 actgcaacag cgataactgc aacaatatcc caggcagcag ccaaaatagt gctgctagca 1021 gtaatagcaa tagcaatagc aacagtatcg cagaatccag tggcaattgc aatatctgca 1081 acgatatcaa cagcaacagc agcaacaaca gcgattgcaa ctatagcaac agtgttggca 1141 gagagaattg cagctgtaat tgcaatatct gcaacaatat caacagcagc aactgcagca 1201 gcagcagcaa cacccccgca gcaatattcg gaatggagcg attgctgcac gccgttcgcg 1261 aggagtttca aacggaggac gagtacgagg agaccgaggt ggatgtggat gatgatgatg 1321 atgaggagca taaactgcac aggagcagca tcagtagttg ctgcagcagc aacagcaaca 1381 gtagcagcgg cagcagcaac agcgactgca gcaacacatc ggcattgctg ccgacgccaa 1441 gacgtcgact tcagcgcagc gatagttttg gatctgttgg gggcggtgct gtggcagggg 1501 gcgtggcagg ggctgcgggg gcggttgggg gggccggagt gcgacgcttt cgccgctcct 1561 caatcggcat gcagcggaag tcggccttcc gccagcgaaa actcgactcc ctgggggcgt 1621 ggcgccggaa gaggcgtacc gcttcggcca gcaattcccg gcgacccatt cgcattgtgc 1681 ccgactggac ggagaatgca gtgcagggcg agcactactg gaagcccacc tcggcctccg 1741 gcgatctttg ctgcctgaac gaggagtgca ttaaaagcgg tcagcggatg aagtgctccg 1801 cctgccagct ggtcgcgcac cacaactgca ttccgtttgt gaacgagaag agcacgctgg 1861 cctgcaagcc gacctaccgg gatgtgggca tccggcagta ccgggagcag acaaccaccc 1921 accaccattg ggtgcaccgc aagctggaga agggcaagtg caagcagtgc ggcaagttct 1981 ttcctatgaa gcaggcggtg caaagcaagc tatttgggtc gaaggaaatt gtggcgttgg 2041 cctgtgcgtg gtgccatgag atctaccaca acaaggaggc ctgctttaac cagtccaaaa 2101 tcggcgagga gtgtcgtctg ggcaactatg cgcccatcat tgtgccgcct tcgtggattg 2161 tgaagctgcc gagcaagggc aacttcaagt cctcgatacg cgtgagcaac aagaacaatg 2221 ccgcctcggg atcaggaggc ggggcgagtg gctcgggggg cggaggaggt ggcggtgggg 2281 gaaagagcaa gaagcagacg cagcgacggc agaagggcaa ggaggaaaag aaggagccgc 2341 gggcgttcat tgtgaagccc attccgtcgc cggaggtaat cccggtcatt gtgtttatta 2401 atccaaagtc gggcggcaat cagggccaca agctgctggg caagttccag cacctgctca 2461 atccgcgcca ggtgttcgat cttacacagg gtggtcccaa aatgggcctt gatatgttcc 2521 gcaaggcgcc caatttgagg gtcctggcgt gcggaggcga cggcaccgtc ggctgggtcc 2581 tttccgtcct ggaccagatc caaccgccgc tccaaccagt tccggccgtc ggtgtccttc 2641 ccttgggcac cggcaatgat ctcgctcgcg ccctcggatg gggagggggc tacacggacg 2701 aaccgattgg gaagatattg cgcgagatcg ggatgtcgca gtgcgtgcta atggaccgct 2761 ggcgggtgaa ggtcacgccc aacgatgacg tcaccgatga ccatgtcgac cgcagcaaag 2821 ccaacgttcc cctgaacgtc atcaacaact acttctcgtt cggcgtggac gcgcacatcg 2881 ccctggaatt ccacgaggcc cgggaggccc atccggagcg cttcaattcg cggctgcgca 2941 acaagatgta ctacggccag atgggcggca aggatctgat cctgcgccaa tatcgcaacc 3001 tctcgcagtg ggtgacgctt gagtgcgatg gccaggactt taccggaaaa ctccgcgacg 3061 ccggctgcca tgccgtgcta ttcctcaaca ttcccagcta tggcggtggc acccacccgt 3121 ggaacgactc ctttggcgcc tcgaagccct cgattgacga cggcctgatg gaggtggtgg 3181 gtttgaccac ctaccagctg cctatgctgc aggcgggcat gcacggcacc tgcatttgcc 3241 agtgccgaaa ggcccggatc atcaccaagc ggaccattcc gatgcaggtg gacggggagg 3301 cctgccgcgt aaagccctcg gtgatcgaga tcgagctgct gaacaaggcg ctgatgctgt 3361 ccaaaaggaa gcacggccgc ggcgatgtcc aggtaaatcc cctggagaaa atgcagctga 3421 acatcttgcg cgtcaccatg caacagtacg agcagtacca ctatgacaag gagatgctac 3481 gcaaattggc caacaaactg ggccaaatcg aaatcgaatc tcagtgcgat ttggagcatg 3541 tgcgcaatat gctcaatacc aagttcgagg aatccatctc gtatccgaag gtctcccagg 3601 attggtgctt tatcgactcc tgcaccgcgg agcactactt ccgcatcgat cgtgcccagg 3661 agcacctgca ctacatctgc gacatcgcca tcgacgagct gtacatcctg gaccacgagg 3721 cggccaccat gccgcagact ccggaccagg agcgctcctt cgcggccttc tcgcagcggc 3781 aggcgcagac ggagcggcgc caactggatc aggcccaggg tcgcggaccc ggcagcaccg 3841 atgaggattt gcaaattggc tccaagccca ttaaagtgat gaagtggaag agccctatac 3901 tggagcaaac ttccgatgcc atactactag cagcccagag cggcgatctc aatatgttac 3961 gtgcactaca tgaacaagga tactcactac agtcagtgaa caaaaacgga cagacggcgt 4021 tgcacttcgc ctgcaaatac aaccacaggg acattgtcaa atatatcatc gcgagcgcca 4081 cacgacgcct catcaacatg gccgacaagg agcttggaca gacggcgctc cacattgccg 4141 ccgagcagaa ccgtcgcgac atctgcgtga tgctggtggc cgcaggcgcc catctggaca 4201 ccatggactc cggcggaaac acgcccatga tggtggcctt caacaagaac gccaacgaga 4261 tagccaccta tttggaaagt aagcagggga cgcagcccgt cgatggctgg ctcgacgact 4321 aagtagcagg tcccccctcc aagtagagca atcgctagac aagcttacgc cgtggggcta 4381 actcacgaca tccagacaac aaacaaaaac aaaccagaca aagcaaaatt aaaccaaaaa 4441 aagaaaagaa aaaatgatta tcacaatacc agaacatcag taaaacagta atccaaaaca 4501 agaatgtact tttaacactg cataaatatt tctcctttct atgccaacaa aacaacaacc 4561 aacaaccaaa atggacaatg tcttgtaaat aactcaactt acctaatcga atcaaacgaa 4621 atccaaaaaa aaaatggaac tcaaatcaaa tcaacattcc gaaaaaaaac aaaaaacaac 4681 tcacattggg gttccgtttc cgattttgca caggtcaaga gcgctttttg catctggagg 4741 tgcagacccg agtctaaaag caaaagagga gcattcggcg gaagcattca ccccacgaca 4801 ccctacatac atacatagat aactaataat aataataatg ataatcgctt ttttttggca 4861 actttttttt tgtgttagca tgtacgagag aaatctaatt taagctaagc aaaaaaaaac 4921 acatacacag aagaacactc aaaacaacat ttagcgacta agaatggaca atggtatgga 4981 ttaacttaat ttattgtaag gaaaagttag gcagacgaaa ggcaacattt gtccaaaatt 5041 taattcaatt ttcaattacg aacaaaaaac taaaaactat ttttaaaaga aggaaattcg 5101 aaatttattt gtttctctta ccgattgatt aacgattaat gattatattg tgatatctaa 5161 attaattaat gtattggact agagaacgaa aacgagaaag agaacgagag caaatagaaa 5221 ttgatattag cgaggcaaaa aagttgaaag aacaaaaaaa aacaacaaaa aacacactga 5281 tccacactaa gcaaaaatat atagcctata tatttaatta attatatatt taattatacc 5341 atatattgta cttcttttgg aattcaaact aggctaagtg agaacttgaa tactcttctt 5401 cggcagagca gcagcacgat tagaagagag acgcactaga ccctaagcgg ctatggctct 5461 ctcgctcagc cacagacaca cacacacaca ccacacaaac acacacacac agtcccgatg 5521 cacagactag gatgcacaac ccccactaga tataccaccc actcttcacc cacttcaccc 5581 cagagaaaca actaaaccct cagcgtttca aaccgaaaga cttccctcaa aaacgaggtc 5641 acctgcccca aaaaaaaaga agaaaaagaa aaa