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LOCUS XM_070219132 6796 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_070219132 VERSION XM_070219132.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6796 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6796 /gene="rdgA" /note="retinal degeneration A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056060" CDS 1054..5445 /gene="rdgA" /codon_start=1 /product="eye-specific diacylglycerol kinase isoform X3" /protein_id="XP_070075233.1" /db_xref="GeneID:108056060" /translation="MQQQQQQPSIDQLSEPIASTSSAAAIRQAAAAAAATSTPTTSST SNNFHQQLQATTAATMQRLRTTFTRSRTPTGAEMKMQNSLEVPKQVKKVRSASFDEMQ LESQRASSSLLKQQSSSSASADERSSEAGFLQVPLAAHQQRSHSFDSAATASGGSDDS GTFLEVPRRLKARRTSSTKTPPPCIHCHYLEEYERLMTADQRYFIDHRELTALSYSNT SSENSEDEDDGEDDDEASSTAIEDAEEETTEAATEEADEDPRTEVESEHDHDPDDDAA MEMDIRIGNMSSQGSSIEESRARLPRQMRRHTIGSSSLASATSEDEGLEGSDNGSPHF GNTLQPPATPCGITFTLSPTNGDYPSPPHLPLDPGSPPMSPCSSNSISGRLPADADDA GAAMGLPVRARRRSISRQEAIFVEPTGNSLENVSHEEVDNHSSNNNTKSSVDTADSLE EASTMATCGSPGAVGGLGPSTSSGAVGGHHNAFVVRDIYLMVPDLKRDRAASVDSCFS KLSSGAKTEELQPSADGCFLTVPNINATRSRSVDIVLPTDEQARYKALSMTGSTVTYA DGRTASASNSRRPIRIVPDWTENAVQGEHYWKPTSASGDLCCLNEECIKSGQRMKCSA CQLVAHHNCIPFVNEKSTLACKPTYRDVGIRQYREQTTTHHHWVHRKLEKGKCKQCGK FFPMKQAVQSKLFGSKEIVALACAWCHEIYHNKEACFNQSKIGEECRLGNYAPIIVPP SWIVKLPSKGNFKSSIRVSNKNNAASGSGGGASGSGGGGGGGGGKSKKQTQRRQKGKE EKKEPRAFIVKPIPSPEVIPVIVFINPKSGGNQGHKLLGKFQHLLNPRQVFDLTQGGP KMGLDMFRKAPNLRVLACGGDGTVGWVLSVLDQIQPPLQPVPAVGVLPLGTGNDLARA LGWGGGYTDEPIGKILREIGMSQCVLMDRWRVKVTPNDDVTDDHVDRSKANVPLNVIN NYFSFGVDAHIALEFHEAREAHPERFNSRLRNKMYYGQMGGKDLILRQYRNLSQWVTL ECDGQDFTGKLRDAGCHAVLFLNIPSYGGGTHPWNDSFGASKPSIDDGLMEVVGLTTY QLPMLQAGMHGTCICQCRKARIITKRTIPMQVDGEACRVKPSVIEIELLNKALMLSKR KHGRGDVQVNPLEKMQLNILRVTMQQYEQYHYDKEMLRKLANKLGQIEIESQCDLEHV RNMLNTKFEESISYPKVSQDWCFIDSCTAEHYFRIDRAQEHLHYICDIAIDELYILDH EAATMPQTPDQERSFAAFSQRQAQTERRQLDQAQGRGPGSTDEDLQIGSKPIKVMKWK SPILEQTSDAILLAAQSGDLNMLRALHEQGYSLQSVNKNGQTALHFACKYNHRDIVKY IIASATRRLINMADKELGQTALHIAAEQNRRDICVMLVAAGAHLDTMDSGGNTPMMVA FNKNANEIATYLESKQGTQPVDGWLDD" misc_feature 2821..3006 /gene="rdgA" /note="first protein kinase C conserved region 1 (C1 domain) found in type IV diacylglycerol kinases; Region: C1_DGK_typeIV_rpt1; cd20802" /db_xref="CDD:410352" misc_feature 3046..3246 /gene="rdgA" /note="second protein kinase C conserved region 1 (C1 domain) found in type IV diacylglycerol kinases; Region: C1_DGK_typeIV_rpt2; cd20855" /db_xref="CDD:410405" misc_feature 3511..3882 /gene="rdgA" /note="Diacylglycerol kinase catalytic domain (presumed); Region: DAGKc; smart00046" /db_xref="CDD:214487" misc_feature 3961..4425 /gene="rdgA" /note="Diacylglycerol kinase accessory domain (presumed); Region: DAGKa; smart00045" /db_xref="CDD:214486" misc_feature <5041..5412 /gene="rdgA" /note="Ankyrin repeat [Signal transduction mechanisms]; Region: ANKYR; COG0666" /db_xref="CDD:440430" misc_feature 5041..5124 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature order(5047..5052,5059..5067,5071..5076,5086..5088, 5095..5097,5122..5124,5128..5130,5134..5136,5146..5151, 5158..5166,5170..5175,5185..5187,5227..5229,5233..5235, 5242..5244,5254..5259,5266..5274,5278..5283,5293..5295, 5302..5304,5329..5331) /gene="rdgA" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293786" misc_feature 5128..5229 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 5233..5331 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" polyA_site 6796 /gene="rdgA" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttcatttgaa cggtcgacga ggcgtgttgt gctagaaaaa atacctcata taaatagcag 61 aacagccccc aaacaggcca aacatttcaa acaaaaatac aatacaaaac tctctggaac 121 tcaagttctt caactcaaca tcgcccaaaa caaaaacatc tcataccaaa gaaaattaaa 181 aacaaaaact cacaatataa atatatagat taactctttt tttgattgtg cttctaagtg 241 ttgtgctaaa actatattaa cttgtataaa tattcaaaga tattcaaaag tatttaactt 301 atattttcaa aatatccacc taaatgctaa gaaaacaaac tcataactaa cggaaagtta 361 aaaggacaaa aaacataaca gacagtttta agaccaagta catttcgaat ttgtcgtgct 421 ttttgaatcc taactgttga cgcgtaaaac gcacaaaaat gtgcacgaaa ttctcactag 481 actcgaacga ctgaaaagtg cgttccattg aaaataaaaa caaaaactga atgcgaaccg 541 cgcgaaactt ttgattaatt aaaagtaaaa caaaaagccg agagccaacc aagaactggc 601 ttctggcgaa caacaacaaa aacccacaac gagagtcctg aaactcgccc acaagtaact 661 tctcctccag gaagcagcta aacaaaccac aaaaaaaaag gacaacaaaa aaagaataca 721 gaattgagaa aaaattcaac tttgaccgaa caccgaacat cgaaatggaa ttggccatca 781 gaattgtcaa ttcgcagttc gctcgctaca aaaacaacta caacagcaat aacagcaaaa 841 ttcacaccag caatagcaaa gatcgaatca tcgacaacaa cgacgagaac aacaatccca 901 acaatctcaa cagtgacaac aatttaacaa cgataagagc agcagtagag aaaactgcaa 961 ccaccaccgg caacaaccaa tcgacatcag cagcagcaac aacagtagct gcaacttgcg 1021 acaaatttgt attgacaaca acaaccaagc gaaatgcagc agcagcagca acagccgtcc 1081 atcgaccagc tgagcgagcc catagcttcg accagcagcg cggcagcaat taggcaggca 1141 gcagcagcag cagcagcaac atcgacaccg acaacatcgt caacaagcaa caacttccac 1201 cagcaactgc aagcaacaac ggcagcaacc atgcaacgtc tgcgtaccac attcacgcga 1261 tcgcgcactc cgaccggtgc cgaaatgaag atgcagaaca gtttggaggt gcccaagcag 1321 gtaaaaaagg tgcgctcagc ctccttcgac gagatgcaat tggagtcgca gcgcgcctcc 1381 tccagcctgc tcaagcagca gtcctcatcc tcggcctcgg cggacgaacg ctcctcggag 1441 gctggcttcc tgcaggtccc cttggcggcc catcagcagc gatcccatag cttcgattcg 1501 gcggccacgg cctcgggggg cagcgatgat tctgggacct ttctggaggt tccgcgccgc 1561 ctgaaggctc gccgcacttc gtccaccaag acaccgccgc cgtgcatcca ttgtcactat 1621 ctggaggagt acgagcgcct gatgacggcc gaccagcgct actttatcga tcatcgcgag 1681 ctgacggccc tcagctacag caacaccagc tcggagaaca gcgaggatga ggacgatgga 1741 gaggatgacg acgaggccag cagcacggcc attgaggatg ccgaggagga gaccactgag 1801 gcggctaccg aggaggcgga cgaagatccc cgcaccgagg tggagtccga gcacgatcac 1861 gatccggatg acgatgccgc catggagatg gacatacgca ttggcaatat gagcagccag 1921 ggcagcagca tcgaggagtc gcgtgcccgc ctgccgcgtc aaatgagacg ccacaccatc 1981 ggcagcagtt cccttgcctc ggcgacctcc gaggacgagg gtctcgaggg atcggacaat 2041 ggatcgccgc actttgggaa taccctgcag ccaccggcca cgccgtgcgg cataaccttt 2101 acgctgagcc cgaccaacgg agactatcca tcgccgccgc atctcccctt ggatcctgga 2161 tcgccgccca tgtcgccgtg ctcctcgaac tcgatttccg gtcgcttgcc cgcggatgcc 2221 gacgatgccg gggcggccat gggtctgccg gtgcgggcca gacgtcgatc gatctcgcga 2281 caggaggcca tattcgtgga gcccaccggg aactcgctgg agaatgtgtc gcacgaggag 2341 gtggacaacc acagcagcaa caataacacc aagtcatcgg tggataccgc agattccctc 2401 gaggaggcct cgaccatggc cacctgtgga tcaccgggag cggttggtgg gttgggccct 2461 tcgacatcct cgggcgctgt tggtggtcat cacaatgctt ttgtggtgcg ggatatttac 2521 ctaatggttc ccgatttgaa gcgagatcgg gccgcctccg tcgattcttg cttctccaag 2581 ctgtcgtcgg gcgccaaaac ggaggagctg caaccaagtg ccgatggctg cttcctcacc 2641 gtgccgaata tcaatgccac acgatcgcga tccgtggaca tcgtgctgcc caccgacgag 2701 caggccaggt acaaggcctt gtccatgacc ggatccaccg tcacctacgc cgatgggcgt 2761 accgcttcgg ccagcaattc ccggcgaccc attcgcattg tgcccgactg gacggagaat 2821 gcagtgcagg gcgagcacta ctggaagccc acctcggcct ccggcgatct ttgctgcctg 2881 aacgaggagt gcattaaaag cggtcagcgg atgaagtgct ccgcctgcca gctggtcgcg 2941 caccacaact gcattccgtt tgtgaacgag aagagcacgc tggcctgcaa gccgacctac 3001 cgggatgtgg gcatccggca gtaccgggag cagacaacca cccaccacca ttgggtgcac 3061 cgcaagctgg agaagggcaa gtgcaagcag tgcggcaagt tctttcctat gaagcaggcg 3121 gtgcaaagca agctatttgg gtcgaaggaa attgtggcgt tggcctgtgc gtggtgccat 3181 gagatctacc acaacaagga ggcctgcttt aaccagtcca aaatcggcga ggagtgtcgt 3241 ctgggcaact atgcgcccat cattgtgccg ccttcgtgga ttgtgaagct gccgagcaag 3301 ggcaacttca agtcctcgat acgcgtgagc aacaagaaca atgccgcctc gggatcagga 3361 ggcggggcga gtggctcggg gggcggagga ggtggcggtg ggggaaagag caagaagcag 3421 acgcagcgac ggcagaaggg caaggaggaa aagaaggagc cgcgggcgtt cattgtgaag 3481 cccattccgt cgccggaggt aatcccggtc attgtgttta ttaatccaaa gtcgggcggc 3541 aatcagggcc acaagctgct gggcaagttc cagcacctgc tcaatccgcg ccaggtgttc 3601 gatcttacac agggtggtcc caaaatgggc cttgatatgt tccgcaaggc gcccaatttg 3661 agggtcctgg cgtgcggagg cgacggcacc gtcggctggg tcctttccgt cctggaccag 3721 atccaaccgc cgctccaacc agttccggcc gtcggtgtcc ttcccttggg caccggcaat 3781 gatctcgctc gcgccctcgg atggggaggg ggctacacgg acgaaccgat tgggaagata 3841 ttgcgcgaga tcgggatgtc gcagtgcgtg ctaatggacc gctggcgggt gaaggtcacg 3901 cccaacgatg acgtcaccga tgaccatgtc gaccgcagca aagccaacgt tcccctgaac 3961 gtcatcaaca actacttctc gttcggcgtg gacgcgcaca tcgccctgga attccacgag 4021 gcccgggagg cccatccgga gcgcttcaat tcgcggctgc gcaacaagat gtactacggc 4081 cagatgggcg gcaaggatct gatcctgcgc caatatcgca acctctcgca gtgggtgacg 4141 cttgagtgcg atggccagga ctttaccgga aaactccgcg acgccggctg ccatgccgtg 4201 ctattcctca acattcccag ctatggcggt ggcacccacc cgtggaacga ctcctttggc 4261 gcctcgaagc cctcgattga cgacggcctg atggaggtgg tgggtttgac cacctaccag 4321 ctgcctatgc tgcaggcggg catgcacggc acctgcattt gccagtgccg aaaggcccgg 4381 atcatcacca agcggaccat tccgatgcag gtggacgggg aggcctgccg cgtaaagccc 4441 tcggtgatcg agatcgagct gctgaacaag gcgctgatgc tgtccaaaag gaagcacggc 4501 cgcggcgatg tccaggtaaa tcccctggag aaaatgcagc tgaacatctt gcgcgtcacc 4561 atgcaacagt acgagcagta ccactatgac aaggagatgc tacgcaaatt ggccaacaaa 4621 ctgggccaaa tcgaaatcga atctcagtgc gatttggagc atgtgcgcaa tatgctcaat 4681 accaagttcg aggaatccat ctcgtatccg aaggtctccc aggattggtg ctttatcgac 4741 tcctgcaccg cggagcacta cttccgcatc gatcgtgccc aggagcacct gcactacatc 4801 tgcgacatcg ccatcgacga gctgtacatc ctggaccacg aggcggccac catgccgcag 4861 actccggacc aggagcgctc cttcgcggcc ttctcgcagc ggcaggcgca gacggagcgg 4921 cgccaactgg atcaggccca gggtcgcgga cccggcagca ccgatgagga tttgcaaatt 4981 ggctccaagc ccattaaagt gatgaagtgg aagagcccta tactggagca aacttccgat 5041 gccatactac tagcagccca gagcggcgat ctcaatatgt tacgtgcact acatgaacaa 5101 ggatactcac tacagtcagt gaacaaaaac ggacagacgg cgttgcactt cgcctgcaaa 5161 tacaaccaca gggacattgt caaatatatc atcgcgagcg ccacacgacg cctcatcaac 5221 atggccgaca aggagcttgg acagacggcg ctccacattg ccgccgagca gaaccgtcgc 5281 gacatctgcg tgatgctggt ggccgcaggc gcccatctgg acaccatgga ctccggcgga 5341 aacacgccca tgatggtggc cttcaacaag aacgccaacg agatagccac ctatttggaa 5401 agtaagcagg ggacgcagcc cgtcgatggc tggctcgacg actaagtagc aggtcccccc 5461 tccaagtaga gcaatcgcta gacaagctta cgccgtgggg ctaactcacg acatccagac 5521 aacaaacaaa aacaaaccag acaaagcaaa attaaaccaa aaaaagaaaa gaaaaaatga 5581 ttatcacaat accagaacat cagtaaaaca gtaatccaaa acaagaatgt acttttaaca 5641 ctgcataaat atttctcctt tctatgccaa caaaacaaca accaacaacc aaaatggaca 5701 atgtcttgta aataactcaa cttacctaat cgaatcaaac gaaatccaaa aaaaaaatgg 5761 aactcaaatc aaatcaacat tccgaaaaaa aacaaaaaac aactcacatt ggggttccgt 5821 ttccgatttt gcacaggtca agagcgcttt ttgcatctgg aggtgcagac ccgagtctaa 5881 aagcaaaaga ggagcattcg gcggaagcat tcaccccacg acaccctaca tacatacata 5941 gataactaat aataataata atgataatcg cttttttttg gcaacttttt ttttgtgtta 6001 gcatgtacga gagaaatcta atttaagcta agcaaaaaaa aacacataca cagaagaaca 6061 ctcaaaacaa catttagcga ctaagaatgg acaatggtat ggattaactt aatttattgt 6121 aaggaaaagt taggcagacg aaaggcaaca tttgtccaaa atttaattca attttcaatt 6181 acgaacaaaa aactaaaaac tatttttaaa agaaggaaat tcgaaattta tttgtttctc 6241 ttaccgattg attaacgatt aatgattata ttgtgatatc taaattaatt aatgtattgg 6301 actagagaac gaaaacgaga aagagaacga gagcaaatag aaattgatat tagcgaggca 6361 aaaaagttga aagaacaaaa aaaaacaaca aaaaacacac tgatccacac taagcaaaaa 6421 tatatagcct atatatttaa ttaattatat atttaattat accatatatt gtacttcttt 6481 tggaattcaa actaggctaa gtgagaactt gaatactctt cttcggcaga gcagcagcac 6541 gattagaaga gagacgcact agaccctaag cggctatggc tctctcgctc agccacagac 6601 acacacacac acaccacaca aacacacaca cacagtcccg atgcacagac taggatgcac 6661 aacccccact agatatacca cccactcttc acccacttca ccccagagaa acaactaaac 6721 cctcagcgtt tcaaaccgaa agacttccct caaaaacgag gtcacctgcc ccaaaaaaaa 6781 agaagaaaaa gaaaaa