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LOCUS XM_070219129 6141 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_070219129 VERSION XM_070219129.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6141 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6141 /gene="br" /note="broad-complex core protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108063837" CDS 499..2583 /gene="br" /codon_start=1 /product="broad-complex core protein isoforms 1/2/3/4/5 isoform X3" /protein_id="XP_070075230.1" /db_xref="GeneID:108063837" /translation="MDDTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIK AHRVVLSACSPYFRELLKSTPCKHPVILLQDVNFMDLHSLVEFIYHGEVNVHQKSLQS FLKTAEVLRVSGLTQQQAEDTHSHLAQIQNLANSGGRTPINSHSHPHPHHGSLHDDGG SASTLFSRQGAGSPPPPQSVVPSVLPPHINNQLLKRMAMMHRSSAAAVAEETSHALKR LRGSDNNGGLPLSGAVGSGGSNNNSPDLPPLHARSTSPQQTPADFSTIKHHNNNNTPP LKEEKRNGPTGNGNSGNGNGNGASNGNGISISDKLGSLTPSPLARAGADDVKSEPMEL VCSNNNANANDEHSNDSTGEHDANRSSSGDGGKGSLSSGNDEEIGDGLASHHAAPQFI MSPAENKMFHAAAFNFPMSNLDHSALLGLNTQLQQSGDLAVSPQGPHSISRSAATSPT SSTSSPPSPPTALTSPTSSLNGSLAAAVYNLHSHHAHGHVLGHASTSPPRPGSVGSSV GSNLCSSSSASGGNNNSGGNSSGSNSNPTSNNNGSSPGQQQQGASATPQAGGTPQLPL RMPPPTSGGINEPQECPYCRRTFSCYYSLKRHFQDKHEQSDTLYVCEFCHRRYRTKNS LTTHKSLQHRGSSGMLKRLLKTSAIKHGLVGHGHGHGHHPAHPHHHGLSHPRTSLFDF TSELGQPPPGIQ" misc_feature 589..840 /gene="br" /note="BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins; Region: BTB_POZ_BAB-like; cd18315" /db_xref="CDD:349624" misc_feature 2242..2307 /gene="br" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2332..2397 /gene="br" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN 1 aggtctagtt gaagccggat cgccggaaac ggaaccggaa ccggaggcga tgcacctgaa 61 acagccggag gatccctcgc aaacagacat ttaaataatc attagtgaat caagtcttca 121 gctacctaag gaatcggcaa ataatcaaga aaagtaaccg aagaagagag tcaagtaagg 181 aataccatcc ttccttccaa aaccggtggg ccaggccgcc aaaaagccgt caaaatacgc 241 aagaaggtga cctcgaagaa ggccagcgtt gtgtcggttg acgacgatca caacaacaac 301 aacaccagcc acaacaacga ccacaacgct cggcagccca caagcacaat tacaccaata 361 tcaacaactc caacacccat accaacgccc ataccaacac caacgcccac gcctggtgac 421 cccgaacaac aggatagcgt agagtaccag taccagtacc agtacccccc cactaccaat 481 cagaaacagc ccatcgaaat ggacgacaca cagcacttct gcctacgctg gaacaactac 541 cagagcagca taacctcggc cttcgagaat ctgcgggacg acgaggcctt cgtggacgta 601 accctcgcct gcgaggggcg cagcatcaag gcccaccgcg tcgtcctctc cgcctgcagt 661 ccctacttcc gcgagctgct caagagcaca ccctgcaaac acccggtcat actgctgcag 721 gatgtcaact tcatggacct gcactcgctg gtggagttca tctaccacgg cgaggtcaac 781 gtgcaccaaa agtccctgca gtccttcctc aagaccgccg aggtgctgcg cgtctcggga 841 ttaacgcaac agcaggcgga ggacacacat agccacctgg ctcagataca gaacttggcc 901 aactccggtg gccgcacgcc catcaactcg cactcccatc cacatccgca tcatggctcg 961 ctgcacgacg acggcggctc cgcctcgacc ttgttcagcc gccagggagc cggctcgccg 1021 ccgccgccgc aatcggtggt gccgtcggtc ctcccgccgc acatcaacaa ccagctgctc 1081 aagcgcatgg ccatgatgca tcgcagcagt gccgccgccg tcgccgagga gacctcgcac 1141 gccctgaagc gcctgcgcgg atcggacaac aacggaggac tgccgctctc cggcgccgtc 1201 ggcagtggcg gtagcaacaa caacagcccc gacttgccgc cgctccatgc gcgcagcact 1261 tcgccccagc agactccggc cgactttagt acgatcaagc accacaacaa caacaacacg 1321 ccgccgctca aggaggagaa gcgtaatgga cccactggca acggaaactc tggcaatggc 1381 aatggcaacg gagcgagcaa cggcaacgga atctccatca gcgacaagct gggcagcctc 1441 acaccatcgc cactcgcacg ggcgggcgcc gatgacgtca agtcggagcc catggagctc 1501 gtgtgctcca acaacaatgc gaatgccaat gacgagcaca gcaacgactc caccggcgag 1561 cacgatgcca atcgttccag tagtggcgac ggcggcaagg gttctttgag ctctggcaac 1621 gacgaggaga tcggtgacgg actcgcctct catcacgccg ccccgcagtt catcatgtcg 1681 ccggcggaga acaagatgtt tcatgccgcc gccttcaact tccccatgag caatctcgat 1741 cactcagcgt tgcttggtct caacacacaa ttgcagcagt ccggtgacct cgccgtttcc 1801 cctcaaggac cgcacagcat cagccgatcc gcagctacct cgcccacctc gtctacctca 1861 tcgccgccct cgccgcccac tgcgctgacc tcgcccacca gttcgctgaa cggcagtctg 1921 gccgcggcgg tctacaatct gcatagccac catgcccacg gccacgtttt ggggcatgca 1981 tccacatcgc cgccgcgtcc cggcagcgtc ggcagcagtg tgggcagcaa cctctgctcc 2041 tcctcctcgg cctccggggg aaacaacaac agcggtggca actccagcgg cagcaactcc 2101 aatccgacta gcaacaacaa cggctccagt cccggacagc agcagcaggg tgcctcggcc 2161 actccacagg cggggggaac gccacagttg ccgctgcgga tgccaccgcc caccagcggg 2221 ggcatcaacg agccgcagga gtgcccctac tgtcgccgga ccttctcgtg ctactactcg 2281 ctgaagcggc acttccagga caagcacgag cagtcggaca cgctgtatgt gtgcgagttc 2341 tgccaccggc ggtaccgcac caagaactcg ctgacgacgc acaagagtct gcagcaccgg 2401 ggctccagtg ggatgctgaa gcgcctgctg aagacctcgg ccatcaagca cgggctggtg 2461 ggtcacggcc atgggcatgg ccatcatccg gcgcatcccc atcaccacgg actgtcgcat 2521 ccgcggacca gcctgttcga tttcaccagc gagctgggac agccgccgcc gggcatccaa 2581 taggagctaa gttggaacgc catcttttag agaacgagaa cgaatcgcca ccagtgagca 2641 gcagccaaga ccagctacaa atactttgcc cattgttttt taaacgacga tcttttggga 2701 aaccctcgat aaaaaaagag gggtccaggt cttagctaat taattatcaa ttaaagcgcg 2761 tactctaagc atattaggca tattttggcg tcaactgttt tattattctt atccctatgt 2821 taggtaatta ttacgattat tgattattat attatgataa atgccagaaa cacctttttt 2881 tttgtctatc tatatcctta gttatttttt gtgctgctct cacctactta gtagttgaag 2941 caccttcgct gcttcatgtg caatacctca agaatcgtgt aaataatttc gataaatcat 3001 aaatacctct gaacacacaa aaaacaaaca aaagcaaaaa catcgtgaag ttgcgtttta 3061 agaatactta ttagaattag cgttatgtta accttattaa cttcaacaac aacaacaaaa 3121 tgggaagaga acgaaggact agaacacacc cacacgcaca catacttaca caaaagaagg 3181 gggcgtgacc caaagggggc ggcagcggat ggagcaataa cggtacatat catataatct 3241 gaatctgcag ctgaaactga aactaaaact agaatgttag atgaagctgc atccgaaatc 3301 gcaaccgaat cttaaatcta aaaatagaat ctgagttacc tcctcgggcg ccccgccccc 3361 cgcctccgcc ccccacacac acaccataca ataaaaatgt aacatttttt ttgctagttt 3421 ttaccccata aagtttgtaa accccttatt ttatttgcca actgctgcgt tctctaaaga 3481 ttcggtttcc agtgagaaaa tatcaagatc aagattaaga tcctacggca aaatagatgt 3541 aatattaaga tgagtgtatg tttttttttt cgaaggaacc ttactgtaaa tgtagcactt 3601 atgtaagaac tagagtaaga gattaacgca aatctaatgt taaacataaa gtcggtagag 3661 agcacaaaga agtttaccac atgcaacaag caagcaaaca aacaaacaaa caaacaaaac 3721 caaccaacaa acaaaagaaa aacgttatca gggataaaat atcaagtatg tagtagaaaa 3781 gtcacttttt ttctacttat tcacatgtac gacgaataaa gtaacagaaa ttcaaatcat 3841 tttttttata tatacatata tacacatgcg tataaatgat aaatgtgcat atgtgcgacg 3901 agagaaacca gaaaaaatat actaaagtct atgtatacat atgtatatac tttactttat 3961 acaccattta ccatttacca tacatatata caatatatat accgatgata gatgatgtac 4021 cgtctactag tacgtgtggt gtacagaaga agaagagctg taaacatttt tgcaaatcga 4081 ggattaacgt attaaaaaca aaaccgcaaa gtaactcagt gatttttcac cagcgaagta 4141 caaatgttct gaaattaaat ttaataacaa gagtcgcaag gagcagaaaa agaaaagtat 4201 gtggaatttc gaatattcag cagatcagaa tcagaaatag caacagtttg cactgccgaa 4261 cattgtcgag ctaccaagca atatctattc aaggtccacc agactatcgg gaatacagat 4321 ataactagag gaaacattaa actgcccaag aaaccaagaa acacacccac gaacatctgt 4381 gttagaaaag atttcaaata cgaaagcgaa aaagtgaaaa agaataagga aaagtacgaa 4441 gaatgtgtat caattcaatg tctcaggaat ttcttaaact taaccaattt acaccctata 4501 tattatgata acacactgca ggaaagtcta cagaatcttc caatcaacac acctctaagg 4561 gggcatatca tcatctaact tcatcatcaa gtgcgagttt tcctttccga tttcttgtca 4621 acaaagcata gatatagggc agtagtagga ataggaatta gtattctttg tgccatgcta 4681 cccagacgaa acataaacag aaacagaaac tgaaacccta ggaataggaa tactaggaac 4741 cagataggat agagtgtaat ggggattggt tgaggtatcg gtttctcgag gtccctctcc 4801 ttatcagcgt tcaagcgaag atccatccag gttaaactaa ctactcaggc actttctcag 4861 taatatcgga cagtaatatc atgggcagtc tcggctctgt agatctgaca tagtcttaat 4921 taatttattc aactcaaccc tacagataca gttacttgtg agcggtcaaa ggtcaggaga 4981 gattgggata ggttgggata ggtggaatcg aaatcgaaat ggaatgaaat aggagcgttg 5041 gagggtccca agattctccc tttcatcata gcgtagttgt aattcttcca cgtacattta 5101 ctttttacac ctatttatga tatctttttt tttcttaatt ttagtgttta attttaaatg 5161 tgttttatac tttattattc tctgatagtt ggacgaaatt tacagtttat tgtagtattt 5221 aatttcctaa aatttgtaag acatttataa ctcttttttt taatattacg aatacgaaaa 5281 gaaaacgcag agacaagaaa cgaaaaataa tgcaaatgca aaacaaactg tgatcttaca 5341 aaatctttga aaagtgaaaa tttttgtatt ttcctttgac gaaattccat tttggctgtt 5401 tatacttttt aattatgtta ccactcaaac aaaatttatg tttagaaact caacgaaact 5461 gtgaatgcga atttttgtat tattttttgt gcaccttctt tatacactta ttgtttatgt 5521 atccaattaa actattaaac ctattcaaaa ttatactttt tggcaaatgt aacacaataa 5581 aaccaatcat tttaagcaaa acaaaccgca aaccatattt tcctctttta gatacataca 5641 ctctatttgt tgttatattt tttaaagccc ttcgtttgac ctcgaaaact cagggaagct 5701 aaccaatgct caggaaacca ccgaacttgt acgacccttc gaaacccctc atcatagatc 5761 gtacatccct actatacaga cagaatccca gccagaaacg aaaaagaaat gaaaagattc 5821 ggagaacaaa aggacctaga tctagcatgg ccaaaataaa ctgattaaaa gacgcatata 5881 ttcgtaccat taataagaag attttgaatc atattaatgt agtttatagc tctaaagttc 5941 gtataaagat attcttagaa atagaatcgt atatgtatac cccatatttg acgcactctc 6001 cccttgcccc acccaaaaaa gggttaggac accagaactt ctatctaaat atctatttat 6061 ctgttgttat ctgtcactct cccatgcgca agtaccttgt acatgtatgt gtgagccaaa 6121 atttgaattt gaatttaaaa a