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LOCUS XM_070219128 4790 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_070219128 VERSION XM_070219128.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4790 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4790 /gene="br" /note="broad-complex core protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108063837" CDS 499..2721 /gene="br" /codon_start=1 /product="broad-complex core protein isoforms 1/2/3/4/5 isoform X2" /protein_id="XP_070075229.1" /db_xref="GeneID:108063837" /translation="MDDTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIK AHRVVLSACSPYFRELLKSTPCKHPVILLQDVNFMDLHSLVEFIYHGEVNVHQKSLQS FLKTAEVLRVSGLTQQQAEDTHSHLAQIQNLANSGGRTPINSHSHPHPHHGSLHDDGG SASTLFSRQGAGSPPPPQSVVPSVLPPHINNQLLKRMAMMHRSSAAAVAEETSHALKR LRGSDNNGGLPLSGAVGSGGSNNNSPDLPPLHARSTSPQQTPADFSTIKHHNNNNTPP LKEEKRNGPTGNGNSGNGNGNGASNGNGISISDKLGSLTPSPLARAGADDVKSEPMEL VCSNNNANANDEHSNDSTGEHDANRSSSGDGGKGSLSSGNDEEIGDGLASHHAAPQFI MSPAENKMFHAAAFNFPMSNLDHSALLGLNTQLQQSGDLAVSPQGKLTTNATTTTTIN NNLITNNNNYVYSLTTKTNSNSKTTTTTPSPTTTTTTTRPTAITSASGICGLNLSTFA ANGSSATSGGGSNGGLSVTALQPQQMSHQHQHQQHQQQANNSSGQQANGILSCSTPNQ PNTPTTTQQQMFAAVMANMASAAASASASTSGSANSSLNNSNSALNTSGGGGGGGGGG NNNNGGGGGAGAASGGDDFRCNPCNKNLSSLTRLKRHIQNVHMRPTKEPVCNICKRVY SSLNSLRNHKSIYHRNLKQPKQEPGGAGGGGGANNQATANSFYHQQHQQQQLNHHSSS " misc_feature 589..840 /gene="br" /note="BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins; Region: BTB_POZ_BAB-like; cd18315" /db_xref="CDD:349624" misc_feature 2431..2514 /gene="br" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275371" misc_feature order(2452..2460,2479..2484,2494..2496,2509..2511, 2536..2538,2545..2559,2563..2568) /gene="br" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275371" misc_feature 2521..2571 /gene="br" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275371" ORIGIN 1 aggtctagtt gaagccggat cgccggaaac ggaaccggaa ccggaggcga tgcacctgaa 61 acagccggag gatccctcgc aaacagacat ttaaataatc attagtgaat caagtcttca 121 gctacctaag gaatcggcaa ataatcaaga aaagtaaccg aagaagagag tcaagtaagg 181 aataccatcc ttccttccaa aaccggtggg ccaggccgcc aaaaagccgt caaaatacgc 241 aagaaggtga cctcgaagaa ggccagcgtt gtgtcggttg acgacgatca caacaacaac 301 aacaccagcc acaacaacga ccacaacgct cggcagccca caagcacaat tacaccaata 361 tcaacaactc caacacccat accaacgccc ataccaacac caacgcccac gcctggtgac 421 cccgaacaac aggatagcgt agagtaccag taccagtacc agtacccccc cactaccaat 481 cagaaacagc ccatcgaaat ggacgacaca cagcacttct gcctacgctg gaacaactac 541 cagagcagca taacctcggc cttcgagaat ctgcgggacg acgaggcctt cgtggacgta 601 accctcgcct gcgaggggcg cagcatcaag gcccaccgcg tcgtcctctc cgcctgcagt 661 ccctacttcc gcgagctgct caagagcaca ccctgcaaac acccggtcat actgctgcag 721 gatgtcaact tcatggacct gcactcgctg gtggagttca tctaccacgg cgaggtcaac 781 gtgcaccaaa agtccctgca gtccttcctc aagaccgccg aggtgctgcg cgtctcggga 841 ttaacgcaac agcaggcgga ggacacacat agccacctgg ctcagataca gaacttggcc 901 aactccggtg gccgcacgcc catcaactcg cactcccatc cacatccgca tcatggctcg 961 ctgcacgacg acggcggctc cgcctcgacc ttgttcagcc gccagggagc cggctcgccg 1021 ccgccgccgc aatcggtggt gccgtcggtc ctcccgccgc acatcaacaa ccagctgctc 1081 aagcgcatgg ccatgatgca tcgcagcagt gccgccgccg tcgccgagga gacctcgcac 1141 gccctgaagc gcctgcgcgg atcggacaac aacggaggac tgccgctctc cggcgccgtc 1201 ggcagtggcg gtagcaacaa caacagcccc gacttgccgc cgctccatgc gcgcagcact 1261 tcgccccagc agactccggc cgactttagt acgatcaagc accacaacaa caacaacacg 1321 ccgccgctca aggaggagaa gcgtaatgga cccactggca acggaaactc tggcaatggc 1381 aatggcaacg gagcgagcaa cggcaacgga atctccatca gcgacaagct gggcagcctc 1441 acaccatcgc cactcgcacg ggcgggcgcc gatgacgtca agtcggagcc catggagctc 1501 gtgtgctcca acaacaatgc gaatgccaat gacgagcaca gcaacgactc caccggcgag 1561 cacgatgcca atcgttccag tagtggcgac ggcggcaagg gttctttgag ctctggcaac 1621 gacgaggaga tcggtgacgg actcgcctct catcacgccg ccccgcagtt catcatgtcg 1681 ccggcggaga acaagatgtt tcatgccgcc gccttcaact tccccatgag caatctcgat 1741 cactcagcgt tgcttggtct caacacacaa ttgcagcagt ccggtgacct cgccgtttcc 1801 cctcaaggta aactgacgac aaatgctaca actactacaa caataaacaa caacttgatt 1861 accaacaaca acaactacgt ttactctcta acaacaaaaa ccaactccaa ctcaaaaaca 1921 actacaacaa ctccatcacc aacaacaaca actacaacaa ctcgacctac agccatcaca 1981 agtgcctccg gcatctgtgg ccttaatctc tccacatttg cagccaacgg gagcagcgcc 2041 accagcggcg gcggcagcaa cggcggcctc tcggttaccg ccttgcagcc gcaacagatg 2101 tctcaccaac accaacacca acaacaccaa caacaggcga acaactcgag cggccagcaa 2161 gcaaatggga tactcagctg cagcactccc aaccagccca acacgcccac caccacccag 2221 cagcagatgt tcgccgccgt aatggccaac atggcatccg cggcggcatc cgcatccgcc 2281 tcgacgagcg gcagtgccaa cagctcgctg aacaactcca actcggcctt gaacacctcg 2341 ggcggcggcg gcggaggagg cggtggcggt aacaacaaca acggcggcgg cggtggtgca 2401 ggcgcagcca gcggtggcga cgacttccga tgcaatccgt gcaacaagaa tttaagctca 2461 ctcacccgcc tcaagcggca catacaaaac gtacacatgc gccccaccaa ggagcccgtc 2521 tgcaatatct gcaagcgcgt ctacagctcg ttgaacagcc tgcgcaacca caagagcatc 2581 taccatcgca acctcaagca accgaagcag gagccaggcg gagctggcgg cggtggagga 2641 gccaacaacc aggccactgc caacagcttc taccatcagc agcaccagca gcagcagctc 2701 aatcatcact cctcctcata gggcttcatg tactttgact atcgccagca gcagcagcag 2761 cagccgccgc accaccacct gcatccacat ccacatccac atccgcactc gcatccgcac 2821 ccacatccgc aacacagagg gttctccagt tgagggggag caggtttttg ttaagtttga 2881 atcaactgaa tgtcagcata tgtaggtgta aggcatagga acacagatac acacacaaga 2941 cggtgctttt tgtacacata aatattaaag acgaggataa aacagcggat gagcacactc 3001 ataaaaataa aaacaagagg gagaacagtc taggctagtt acaattagtt gccttcggta 3061 gttgctaagc acaggataca cagtttatac agagtaaatc gatagccgtt aataacccta 3121 agaaaaccct caaccccccc tgtaaagttt ccaaaagtta acccattacc attcccattc 3181 ccaatccact ttcccatcca agttcactct ttgtcgtcag ctatacaagt cttaataccg 3241 ttaagtagga gctaaaacag aggtgcccgt agtgaattct tcgaaatggc tttaactaaa 3301 tacaatttat ccgatggaga gcatattctg tatacactgt atacttatca taaggcacag 3361 ttcgtatata tcgatttcaa tgggggatat gcaaagcgtt agacgtatga attatctctc 3421 tctaaacgtt acacattaca aataataaag accaagctgc agtttttttt acctttacgt 3481 agtacataga tatataatgt tgaagagtta cgatttatag atgtagaagt tttacgagaa 3541 gatgaaaaag aagaggaaga agaagtgatg agcgaaaggg agcgaccgac cgaacgaccg 3601 accaattgca aagatctttt ctatattgta ctctaaaata gttatcaaat tcggaatagt 3661 tagggttaag agcacaccaa cacacccaaa acacccaaac acccatgcgc acacacacac 3721 aaatcacgat gcatatgtat gtctagatta agaaaaatgt ttacccatag tgtacgttct 3781 tttttttgca tttttttata tatatataat atatatgtat ttaatgttag ttatgcgaat 3841 attgaataat tataccgaaa tgtttgaccg gatactttga tgagtaaacc tgtgttcgtt 3901 aatttttagt gctgctaagt aaagatacat aagacctata tgaatacaag caaatatata 3961 tatatataca ccacacacac ccccacaaag ccacacacac acacatccac aagccaatgc 4021 agttgagatc catgtatgat atgaagcgat tgcggttctg tgcgaagaac tccactttct 4081 attctaattc aattcatgat aattacaata aacgtctaca catcaaagcg atatttcatt 4141 taccacgccc ccgatcccga ggacacgccc cctctctccc cctcccacag cctccttgtt 4201 gtatgcatgt caatcgagga gttattaaac ggaacccgtg ggaaactaac aaaaaaagaa 4261 ggaaaaaaaa acaaatggag gaaactctgt ctcactctcc acctatctct gtctcacatc 4321 atgcacatat tgtcctaaac tcatataaga atacataacc ctagatcgta gtgctcatgt 4381 catgtgtgcc gaaccgaacc gaaccgaatc gaatcgaatc gaactctgac cccatcacac 4441 ccacacctac gccgacactc tcgcacacac tgcccctcgg gtcgagagcg aacttcacct 4501 actttaagaa cccaagaacc ccgcagaagc agtctcagaa agaaaaacca tcaatactgc 4561 tactactaac atcccacatc caatatccaa tcccgtaaaa tggagacccc aatgcaatgc 4621 taagtatctg aatctgaatc ttagaccccc gaaccctcga accaaccctc gcacacagcc 4681 gaacattgga ataagccccc tgtgtgtgac ccaaaccgtt cccaagcact tttaatctac 4741 cgcacatttg gttcttttta accgaacccc taaccacaaa ccccaaaacc