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PREDICTED: Drosophila takahashii flotillin-2 (Flo2), transcript


LOCUS       XM_070219120            3022 bp    mRNA    linear   INV 09-DEC-2024
            variant X5, mRNA.
ACCESSION   XM_070219120
VERSION     XM_070219120.1
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3022
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..3022
                     /gene="Flo2"
                     /note="flotillin-2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 Proteins"
                     /db_xref="GeneID:108070114"
     CDS             109..1278
                     /gene="Flo2"
                     /codon_start=1
                     /product="flotillin-2 isoform X4"
                     /protein_id="XP_070075221.1"
                     /db_xref="GeneID:108070114"
                     /translation="MTLNPMCENVETSQGVPLTVTGVAQCKIMKSSSYKHNDYNNDEA
                     DELLGTASEQFLGKSVKEIKQTILQTLEGHLRAILGTLTVEEVYKDRDQFAALVREVA
                     APDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAVVKRDADAGVAEANRDAGIREAE
                     CEKSAMDVKYSTDTKIEDNTRMYKLQKANFDQEINTAKAESQLAYELQAAKIRQRIRN
                     EEIQIEVVERRKQIEIESQEVQRKDRELTGTVKLPAEAEAFRLQTLAQAKQCQTIEGA
                     RAEAERIRKIGSAEAHAIELVGKAEAERMRMKAHVYKQYGDAAIMNIVLESLPKIAAE
                     VAAPLAKTEEIVLIGGNDNITNDVTRLVAQLPPSINALTGVDLSKVLSKIPGAKA"
     misc_feature    109..1275
                     /gene="Flo2"
                     /note="Uncharacterized membrane protein YqiK, contains
                     Band7/PHB/SPFH domain [Function unknown]; Region: YqiK;
                     COG2268"
                     /db_xref="CDD:441869"
     polyA_site      3022
                     /gene="Flo2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 attgtttcag gtggctgctg tggatcgacc aagaagcgca ccattgtggg cggctgggcg
       61 tgggcgtggt ggctggtgac cgatgtgcag cgactctccc tcaacgtgat gaccctcaat
      121 ccgatgtgcg agaacgtgga gacctcccag ggcgttccgc tgacggtgac cggagtggcc
      181 cagtgcaaga tcatgaagtc atcttcgtat aagcataacg attataataa cgacgaggcc
      241 gacgagcttc taggcactgc cagcgagcaa ttcctgggca agagcgtcaa ggagatcaag
      301 cagacgatcc tgcagaccct cgaaggacac ctgagggcca tattgggaac gcttacagtc
      361 gaagaggtgt acaaggaccg cgaccagttc gcggctttag tccgcgaggt ggccgccccg
      421 gacgtgggtc gcatgggcat cgagatcctc tccttcacca tcaaggacgt ctacgatgat
      481 gtgcagtacc tggcctcgct gggcaaggcc cagacggccg tcgtgaagcg ggacgccgat
      541 gccggcgtgg cggaggccaa ccgagatgcc ggaatccgtg aggccgagtg cgagaagagc
      601 gccatggacg tgaagtactc gacggacacg aagatcgagg acaacaccag gatgtacaag
      661 ctgcagaagg ccaatttcga tcaggagatc aacacggcca aggccgaatc gcagctggcc
      721 tacgagctgc aggcggccaa gatccgccag cgcatccgta acgaggagat ccagatcgag
      781 gtggtggagc gacgcaagca gatcgagatc gagtcgcagg aggtgcagcg caaggatcgc
      841 gagctcaccg gcaccgtcaa gctgccggcc gaggcggagg ccttccgcct ccagaccctc
      901 gcccaggcca agcagtgcca gaccattgag ggtgcccgtg ccgaggcgga gcgcatccgg
      961 aagatcggat cggcggaggc ccatgccatc gagctggtgg gcaaggcgga ggcggaacgc
     1021 atgcggatga aggcccatgt gtacaagcag tatggcgacg cggccatcat gaacattgtc
     1081 ctcgaatcgc tgccgaagat tgccgccgag gtggctgccc cactggccaa gacggaggag
     1141 attgtcctga ttggcggcaa cgataatatc accaacgacg tgacccgctt ggtggcccag
     1201 ctgccgccct cgatcaacgc cctcaccgga gtggatctgt ccaaggtcct gtccaagatt
     1261 cccggggcca aggcgtgaaa cctaatggag tgggacatcc aggaaatggc aatgacaacg
     1321 taacgcaacg caaaggaatt gtaaccgatc tgaaaacggc aaggagagaa ggagacggca
     1381 ggagagcgaa cgaaaaggac ggagctagtg tgcatttgtt agagagagac aacagcgagg
     1441 cgtactcgaa acttacaatt tgagtttcga actgcaatcg aacgtagcaa aatgtactcc
     1501 gatattatat ttatatatat atatatatct ttgtatatgt atatgcacac atgctataca
     1561 cacatacact cgtctcgtct gtgtggtgtg ccagtgtgtg tgtgtgtgat gtttgcccgg
     1621 gtaacaatca aaaaaacaaa agaaaagaaa aaccaacgtt aatctcagct aaagttatgc
     1681 atttcgtacg caacattttg tggccttttc tctcgaaaac gaaaacgata acccgataac
     1741 gataacaaaa aatcaacgtg aaatttgtat aactttaaag cgaaaaccat ttaagcagag
     1801 tgttagctat ttatttacta tactatatat actatataca tgcagacatg ctataaacaa
     1861 agagctcttc taagtaaccg catcaaaaat ttaatgccag acagtgatgt aaagatataa
     1921 aagaacttac agtgttgtaa agttgcatat acatatgtag ccctttttct ctcacacaat
     1981 ttcgatctgc taacgaaata catgacatct gtccaaaact acaactactg cctatcgact
     2041 aaagccaaat ctataagcta gtgagccaaa tggaaagaga gagaaagagg gtgcgactat
     2101 gaaagacgac cgatcgagtt cctattcata aaattcaacg gccaaactca accaactgta
     2161 gagtttgtat aaaactagca ctcttttaga ctccccaatt ttagtttata gtataaatat
     2221 aatacgtgtt tctcctgtat tttgttaatc gtttattttt acttggacgt gccataacgg
     2281 gctcaagttt cgttttcagt aattcacatt taattttttg ttgcctttca ttatatctga
     2341 tagttgctag aaaagccaag attatcatag ttatactcga tcgactgatg tcatttgtta
     2401 atgagtgata tgcagcttta caacactgct ttctctgtag ttggcgctct tccaaaaccc
     2461 acacacacac acttaccaac acttcagtgc acaaagagaa atcaatattt gttgttatac
     2521 aaaaatttca taaaactatg tttcgattaa tatatttttt catggttttt tatatatatt
     2581 ataacacata tttaactacg aatatgcatt tacaattttt gtactttatt cttacactgt
     2641 ttagtttata gcaaaaggca agaaaatata aataaaatat ataaaaaagg gaactaattt
     2701 tgttatttac taacatctta ctggaattta catagttaaa caatttatcc agctctttcg
     2761 ttttgttaga gtaattaaac ctaatttttg taagcacttc tccgaatcac acacacccat
     2821 tagacacaca cacccacata tatatttttt ttctattgta tattaagtgc aagtaatttt
     2881 aattgtaatg cagtgtgaaa gagaaaaaga acaagaacaa caaccaaccg aagaactaaa
     2941 ctaaaagcta aacctaaata aatcaaatgt aaaattttgt gtattttgtc gtaaataaat
     3001 aaattgaaaa atacctgtaa aa