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LOCUS XM_070219115 2870 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_070219115 VERSION XM_070219115.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2870 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2870 /gene="Scgdelta" /note="sarcoglycan delta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108063840" CDS 136..1308 /gene="Scgdelta" /codon_start=1 /product="delta-sarcoglycan" /protein_id="XP_070075216.1" /db_xref="GeneID:108063840" /translation="MLAAGSSEISDFGPNSQRLSVGTTPKRPHKAVGGGGGGGHRPGP MTTGGTSGSAGSGNGAARGGGGAPMTATTVTATTGKATVSGHGGHGHARGVVRSAPNP PGGRSNVDGFVGGIETYLGLIGWRKKCLYTLLLLLMLLIITNLVLTLWILKVMEFSTE GMGQLKIVPGGIQLSGQAIIMDMLRASTIRSRHGQPISIESSRNFSINTRDPNGMIEN HLFLGHDKFECLSAGFRINDTNGRSLFSVNRNEVTIGAHALRIEGEGGAVFRESVQTP HVRAEPGRELRLESPTRQLEMTAAKDINLQSRAGGIEVVALEDVKFRALDGSLRLESS KILMPNLRTAQPPILGTAQSRDHMHRVFQLCACSNGKLFLAAPHSICAGDDSTVCR" misc_feature 496..1272 /gene="Scgdelta" /note="Sarcoglycan complex subunit protein; Region: Sarcoglycan_1; pfam04790" /db_xref="CDD:461428" polyA_site 2870 /gene="Scgdelta" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgcgagccga gccgagccgc aaaatcgtgt atccggccat agtccacagt tggtagtcca 61 cagtccagat tattgaaaca gccggcaatc atgagcctct catgcctcca ctagctgccg 121 tgcagcagct cagcaatgtt ggctgctggc agcagtgaga tcagtgactt tgggccgaac 181 tcgcagcgat tatcggttgg caccacgccc aagcgaccgc acaaggccgt tggtggtggt 241 ggtggaggtg gccatcgtcc tggcccaatg acaactggcg gcaccagcgg atcagcggga 301 agcggtaacg gagcagccag aggaggcgga ggagcaccca tgactgccac cactgtgaca 361 gcgacgacgg gcaaggccac ggtcagcggt catggcggcc atgggcacgc gaggggggtg 421 gttcgcagtg cccccaaccc accgggcgga cgctccaatg tggacggatt cgtggggggc 481 atcgagacgt atctgggcct cattgggtgg cgaaagaagt gcctgtacac cctgctcctg 541 ctgctgatgc tgctcatcat cacaaatctg gtgctcaccc tctggatact gaaagtgatg 601 gagttctcga cggagggcat gggtcagctg aaaatcgtac ccggtggcat acagctgtcg 661 ggacaggcga taattatgga catgctgcgc gcatcgacaa tccgttcgcg gcacggccag 721 cccatctcca tagagtcatc acgtaacttt tcaatcaata cacgtgaccc gaatggcatg 781 attgagaatc acttattcct gggacacgac aagttcgagt gcctgtcggc gggctttcgc 841 ataaacgaca ccaacggacg cagcctgttc tcggtgaatc ggaatgaagt cacaatcgga 901 gcccacgccc tgcggatcga gggcgagggc ggcgctgtct tccgggagtc cgtgcagacg 961 ccccatgtgc gcgccgagcc aggaagggaa ctgagactcg aatcgcccac ccggcaattg 1021 gagatgacgg cggccaagga catcaatttg caatcgcggg caggcggcat agaagtcgtg 1081 gccctggaag atgtcaagtt ccgagccctc gatgggagcc tgcgactgga gtcctcgaag 1141 atactcatgc ccaatttacg gacggcccag ccgcccatcc tgggcacggc ccaaagcagg 1201 gatcacatgc accgcgtctt ccagctctgc gcctgctcca acggcaagct cttcctggcg 1261 gcaccgcact ccatatgcgc gggcgacgac tccaccgtct gcagatgatt gcacgacagc 1321 gcgcgatggc agtccacatc cacatccacg tccagatccg catcgaattc cgactaagag 1381 gagcgagtca cgactatagc cgatatctgt aggcacaggc atcacccaaa acgcacacgt 1441 acatgttgaa ttactcatat gctaactgta acatagaacg gtatgccata tacacctaat 1501 tagtggaaca tatgattacg gatacccgat aaatgattaa tgattaatga ttacccatca 1561 tgccatcata cccactctcg agggaattag ggaactgtac ccagactcga aggacaaaat 1621 caagagcttc ttagacactt ggatgttgtg tactcactag tataacaaaa ggctaatcgg 1681 aggcataggc atttccccca tagacataca tactaaacat caccgaagaa gttatatagg 1741 aaaatatgaa atcatagtca gaaacagtcg aaacccataa tctgtattat cgttaattgc 1801 agcctaacat tattttaact attataaatt gggagtctac cagtggacct gtgtgttttg 1861 tcttttgtta ccccaaaaac aagatcatat tgtaattcgc cttaaaagta tttctaatag 1921 tttttaattt taaatattaa tttttttaca cgcattattg ataaacgaat taataaaata 1981 ttaaaattta cgaggatttt ttcagaattc tattgttttc actatagact tctgctggct 2041 atcgataatt atcgattata gtcgaaaata tcagtgtctt ttgatttatt tatcaaatat 2101 cagacccctt tccccaaagc agtccagaga tattgtacat aagactgtct atttcataga 2161 actcgactac tgcatcgtag catcaaactg caaaaccaat acaaagtaac taggacgtac 2221 tcgtaaatgt attcatgtag ataatcccga agcgactaac gaagtttaga aaatgtttgt 2281 acgataacta cgatcggaat cagaatcaga atcagattat ccaaaatccg aagcagcatg 2341 ctggcattta aaacacaata cgaagacaat gaaatatcat ccaatgaatc gcaagagcta 2401 tttataccta tacctacatg tgtaatatcg cagatacaaa caaaatatta aaaccaatac 2461 gaatatgagt atagatatga atatgaatat gagtaaatga gtttgaacat ggctatggat 2521 atgaatatga atatggatat ggatataaat ataaataaat ataaatatga atagagttga 2581 atatgaaatt gccgttgaat ttgtcaagtg tgagaacact gatatataga tatatataaa 2641 tacaaataaa tgtatatgta tctgtatgta tgtacaccta atgcaaaatg cttttaaagg 2701 gaaattaagt ttaatttgtt gttgattttt tttagcacga ttaggaaaca taatgtttat 2761 ataggaaata cggagagtac ggaggagaag aatacgaaat ctttatatat cacatatatt 2821 gtaatacagc aagaatactt aaaaacgaaa tacatgcgta aaccaagtaa