PREDICTED: Drosophila takahashii asperous (aspr), transcript

LOCUS       XM_070219113            1549 bp    mRNA    linear   INV 09-DEC-2024
            variant X4, mRNA.
ACCESSION   XM_070219113
VERSION     XM_070219113.1
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1549
                     /gene="aspr"
                     /note="asperous; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein"
                     /db_xref="GeneID:108057293"
     CDS             115..1329
                     /gene="aspr"
                     /codon_start=1
                     /product="adhesive plaque matrix protein 2 isoform X4"
                     /protein_id="XP_070075214.1"
                     /db_xref="GeneID:108057293"
                     /translation="MQLLLVALVAVAIGSLPQLAVAQQSYSSGCSGNPCGVNAVCQEA
                     SGGRPVCSCPPGFSGNPLTHCNRGECLDNVDCRGDLQCKDNRCVNPCVGACGIGSNCD
                     ARNHVAVCSCPAGYNGDPYHACHLNDPEEQCHPSPCGVNTKCEIINGVPTCSCNHGYV
                     GNPLSGCRHECDHDGDCSGRDMCSTNFKCVPACGQCGTGATCRTVSNHRAVCECPKGY
                     IGSPYTECRPECYGDADCPAGRPACFYGICKNTCEGACGIGADCNLRGLTPVCSCPRD
                     MTGDPFVRCRPFTKEDLCDPNPCGNNAICVPGHDNTGRERPVCNCLPGHTGNPLSHCS
                     RGECLSNNECPDHRACINYQCIDPCIGKCATGASCEPKAHLAVCRCPQGQSGDALVSC
                     RQTRTFPVAKYH"
     polyA_site      1549
                     /gene="aspr"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 acattaccca gtgaaaaaac ggaaccattt acgaatttat atattttttt tgttttttat
       61 tttacgttgt ttatttgctg tagtgcgagt gagttctaag aacttaaccc aaaaatgcag
      121 ctcctcctcg tggcactggt ggcggtggcc attgggtcct tgccccaact agccgtagcc
      181 caacagtcgt acagcagcgg atgcagcggg aatccgtgcg gcgtgaatgc cgtgtgccag
      241 gaggcctccg gaggacgtcc tgtttgctcc tgcccgcccg gattcagcgg taatccgctc
      301 acccactgca atcgcggcga gtgcctggac aacgtcgact gccggggcga cctgcagtgc
      361 aaggacaatc gctgcgttaa tccctgcgtg ggtgcctgtg gcattggctc gaattgtgac
      421 gcccgcaacc acgtggccgt gtgcagctgc ccagcgggct acaatggcga cccctatcac
      481 gcctgccacc tcaacgatcc ggaggagcag tgccatccga gtccttgcgg cgtgaacacc
      541 aagtgcgaga tcatcaacgg cgtgcccacc tgttcgtgca accatggcta cgtgggcaat
      601 ccgctgagcg ggtgtcgcca tgagtgcgac cacgacggcg actgcagcgg ccgggacatg
      661 tgctcgacca acttcaagtg cgttccggcc tgcggacagt gcggcactgg cgccacctgc
      721 cggacggtca gcaaccaccg ggcggtgtgc gagtgcccca agggatatat cggcagtccc
      781 tacacggagt gccggccgga gtgctacgga gacgccgact gtcccgccgg acgacccgcc
      841 tgcttctacg gcatctgcaa gaacacctgc gagggagcct gcggcatcgg ggccgactgc
      901 aacctgcgcg gcctgacgcc cgtctgcagc tgtccgcggg acatgaccgg cgaccccttc
      961 gtccgctgcc gacccttcac caaggaggat ctctgcgacc ccaatccgtg cggcaacaac
     1021 gccatctgcg tgcccggcca cgacaacacc gggcgggagc gacccgtctg caactgcctg
     1081 ccgggacaca ccggcaatcc gctgagccac tgcagccggg gtgagtgcct gagcaacaac
     1141 gagtgtcccg accaccgcgc ctgcatcaac taccagtgca tcgatccctg catcggcaag
     1201 tgcgccaccg gtgccagttg cgagccaaag gcccatttgg cggtctgtcg ctgtccacaa
     1261 ggacaatcgg gcgacgcttt ggtgtcctgc cgccagacgc gcaccttccc ggtggccaag
     1321 taccactagg gaggattccg gaggaggagt cccgatgcag ccgcactgcc tgccagtccc
     1381 ttagtcacct ttcgtccctg cctcaacctg cacaccagtc tatctgttcg tcccctcgaa
     1441 ttcgccttct tcccatacta gtcgttgcat taacctcgta ctctctctct aatcgaagcg
     1501 aacaaaaatg tgttgacaac aatcaataat acaagtaaac attaaacaa