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LOCUS XM_070219103 3020 bp mRNA linear INV 09-DEC-2024 (LOC108066899), transcript variant X2, mRNA. ACCESSION XM_070219103 VERSION XM_070219103.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3020 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3020 /gene="LOC108066899" /note="uncharacterized LOC108066899; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108066899" CDS 32..2905 /gene="LOC108066899" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_070075204.1" /db_xref="GeneID:108066899" /translation="MFLAVNQSLQNTSKKKRKRRTAEDDPQEEDQATTTAAGVPSNLE SSASSDQLVLGAAGGSTCRLCKCPGRQSLALVYIYLGALTLILASLSLVFYTHTQDAS GMPPDLPLDSRAFRVQFQAELLRSEDELRAMVSRILAEEEQQQLGGGTTTRASTASSR TSDPLKNERKFTDNLISHTPPPNGKRMRRDIASSAPASMHADPLIEFFNPNHRKVLDE QDSEIRKRTGQKGAAPGGDEWIYLNTYCRVPEKIITGFCKGTQDYCPPAPQGPTGEVG PKGPTGNPGLPGIPGPKGNRGDVGLPGAPGVDGVGHSGPAGPRGPKGDAGATGRAGLD GRDGVPGEPGLDGVPGRAGADGKNGLSGRDGKDGLHGKDGKDGLSITGPKGAQGPPGE RGLKGIAGPRGRPGKPGTNGTPGVPGINAWKMQFPNGSSSNDLLIPPSITDLQLPDFQ RSVIVEEGRSLNLSCSATGTPTPQVEWRREDGRTINVNGVEMASVSGQFLKFTNITRH QMAAYTCYANNGIAPVANATYLVEVQFAPMISVFRQTIYAEYQSSATLECIVEAFPEP IRYWERAYDGKILDPSEKYGIESFPEGFKTTMRLIISNLRKDDFGYYHCVARNELNAT MVNFEVAPQDPNSETPYVGSGMKVYGQRPPESECPVCDQCPDPSLYQCKDQILNSFEI QPTGNLSYPGLPKRPKTCYLYAVGKPVFHKVVNEKFGSWLRDPSPDSDKEKTFVTNEN DPYNLFEFTTRIQYRMNSIPRRKYEIQEGFHGNAHVVFNGSFYYQQRNSDLVVKLDLI SLKKITTQLPFAGVAAANRLYATDFNYMDFNVDEVGLWVIYSTYNSNNTLVAKLDAET LKMQYNFNITLDHHQFGEMFIVCGNLYAIDSGTDKNTQIRYVVDLYNGKLLNTNLPFS NPFSHTTTVGYNPLTVELYSWDKGNALTYPIRYNEQRLIADNS" misc_feature <824..>1282 /gene="LOC108066899" /note="LPXTG-anchored collagen-like adhesin Scl2/SclB; Region: gly_rich_SclB; NF038329" /db_xref="CDD:468478" misc_feature 1388..1630 /gene="LOC108066899" /note="Immunoglobulin domain; Region: Ig; cl11960" /db_xref="CDD:472250" misc_feature 1412..1426 /gene="LOC108066899" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409562" misc_feature 1451..1465 /gene="LOC108066899" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409562" misc_feature 1523..1537 /gene="LOC108066899" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409562" misc_feature 1565..1582 /gene="LOC108066899" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409562" misc_feature 1607..1618 /gene="LOC108066899" /note="Ig strand G [structural motif]; Region: Ig strand G" /db_xref="CDD:409562" misc_feature 1640..1888 /gene="LOC108066899" /note="Immunoglobulin domain; Region: Ig_3; pfam13927" /db_xref="CDD:464046" misc_feature 2135..2872 /gene="LOC108066899" /note="Olfactomedin-like domain; Region: OLF; pfam02191" /db_xref="CDD:460482" polyA_site 3020 /gene="LOC108066899" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gccaacgcgt tcgctccctg aacccggtaa aatgtttctg gctgtcaacc agagtctgca 61 gaacaccagc aagaagaagc gcaagcggcg gacggcggag gatgatccgc aggaggagga 121 ccaggccacc accaccgccg ccggagttcc cagtaacctg gagtccagtg catcgagtga 181 ccagttggtc ttgggagccg ccggtggctc cacctgtcgg ctgtgcaagt gccccggacg 241 gcagtccctg gccttggtct acatctactt gggcgccctc accctcatcc tggccagcct 301 gtcgctggtc ttctacacgc acacccagga tgcctccgga atgcctcctg atcttcccct 361 ggactcgcga gcctttcgcg tgcaattcca ggcggaacta ctgcgttcgg aggatgagct 421 gcgggccatg gtcagcagga tactcgccga ggaggagcag cagcaactgg gtggaggtac 481 caccaccaga gccagcacag cgagcagcag gaccagcgat cctctgaaga acgagcgcaa 541 gttcacggac aacctgataa gccacacgcc gccgcccaac ggaaagagga tgcgccggga 601 cattgcctcc tccgctcccg cctccatgca tgctgatccc ctgatcgagt tcttcaatcc 661 gaaccaccgc aaagtgctcg acgagcagga ctcggagatc cgcaagcgga cgggccaaaa 721 gggcgccgct cccggcggcg atgagtggat ctacctgaac acctactgcc gggtgccgga 781 gaagataatc acgggcttct gcaagggcac ccaggactac tgtccgccgg cgccgcaggg 841 acccacgggc gaggtgggtc cgaaggggcc caccggcaat cccggcctgc ctggcattcc 901 gggtcccaag ggcaatcgcg gcgatgtcgg actgcccggc gcccccggcg tcgatggtgt 961 gggtcattcg ggtccggcgg gtccgcgggg acccaaggga gatgcgggcg ccacaggaag 1021 ggcaggtttg gatggaaggg atggagtacc gggtgaaccg gggctggatg gcgtaccagg 1081 gcgggctggt gctgatggca agaatgggct gtccggtcgc gatggcaagg atgggctgca 1141 tggcaaggac ggcaaggatg gtctgtccat cacgggaccc aagggagccc agggaccgcc 1201 cggcgaacgg ggtctgaagg gcattgccgg tccccgcggt cgtcccggca agccgggcac 1261 caacggcaca cccggagtgc ccggcatcaa tgcctggaag atgcagttcc ccaatggcag 1321 ctcctccaac gatctgctca taccgccctc tataacagat ctacaacttc cggacttcca 1381 acgctcggtg attgtggagg agggcagatc gctgaacttg agctgctcgg ccacgggaac 1441 tcctacgccg caggtggaat ggcgtcggga ggatggtcgc accattaatg tcaacggcgt 1501 agagatggcc tccgtcagcg gacagttcct gaagttcacc aatatcacac gacaccagat 1561 ggccgcctac acttgttatg ccaacaatgg catcgctcca gtggccaatg ccacctatct 1621 cgtggaagtg cagtttgcac ccatgatttc ggtgttccgt caaacgattt acgccgagta 1681 ccagagtagc gccactttgg agtgcatagt ggaggccttt cccgaaccca tcagatattg 1741 ggagcgagcc tacgacggca agatcctcga tcccagcgag aagtacggca ttgaatcgtt 1801 tcccgagggc ttcaagacca ccatgcgctt gatcatcagt aatctgagga aggatgattt 1861 tggctactat cactgtgtgg ccaggaatga attgaatgcc accatggtta actttgaagt 1921 agcacctcaa gatccgaaca gtgagacccc ttacgtgggc agtggcatga aggtctacgg 1981 ccaaagaccc ccagaaagcg agtgtcccgt ttgcgaccag tgtccagatc ccagcttgta 2041 ccagtgcaag gaccaaatac tgaatagctt tgagatccaa cccacgggca atctgagtta 2101 tcccggtcta cccaagcgac cgaaaacctg ctatctgtat gccgtgggca agcccgtttt 2161 ccacaaggtg gtcaacgaaa agttcggctc ctggctgagg gatccttcgc cggatagcga 2221 taaggagaag accttcgtga cgaacgagaa cgatccgtac aatttgtttg agttcaccac 2281 ccgcattcag taccgaatga acagcattcc ccggcggaaa tacgaaattc aagagggctt 2341 tcatggcaat gctcatgtgg tcttcaacgg ttcgttctac tatcaacaaa ggaactcgga 2401 tctggtggtc aagctggact tgatcagtct caagaagata accacacaat tgccatttgc 2461 cggagtggca gctgcaaata ggctgtatgc caccgacttc aactacatgg acttcaatgt 2521 ggacgaagtg ggtctttggg tgatctacag cacctacaac tcgaacaaca cgctggtggc 2581 caagttggat gcggagactt tgaagatgca gtacaacttc aatatcaccc tggaccacca 2641 tcaattcggc gagatgttca tcgtgtgcgg caatctgtat gccatcgatt cgggcacgga 2701 taagaatacc cagattcgct atgtggtcga tctgtacaat ggcaagctgc tcaacacgaa 2761 tctgcccttc tcgaatccct ttagccacac cacaaccgtt ggctacaatc cccttacagt 2821 ggaactctac tcctgggaca agggcaatgc actcacatat cccatacgct acaacgaaca 2881 gcgtctcatc gccgacaata gttaggagaa gatgaagaac tttaagatct taaagatcct 2941 aacgagatcc taacggctca aatctaaata gtctaaggca caataaataa atgtaaagtg 3001 tttttttttc caaaagcaaa