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LOCUS XM_070219091 7474 bp mRNA linear INV 09-DEC-2024 transcript variant X4, mRNA. ACCESSION XM_070219091 VERSION XM_070219091.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7474 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7474 /gene="mud" /note="mushroom body defect; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108056082" CDS 347..7366 /gene="mud" /codon_start=1 /product="early endosome antigen 1 isoform X4" /protein_id="XP_070075192.1" /db_xref="GeneID:108056082" /translation="MDLRMWRKILVRWIVECQFIDHNFITLEQSDIEAFFLIYIQNAQ EAQEGAGEEEKEKKDEETEAEQAQPVELRSPLAAFLREHYPEFSAHMSSHGHLVSSDY VFVYTLLLQYACVKRPSMIFHSICQRLPAPMQQPMANLLDQTTKVQQLTRQNLRQIIA NVVVEKENGDSPVSPCQPSSSISRSPEQLAMDNTPGSSSSSSMAATSPQPPTSTPQQA YHHRDRLRVQVSGSDMPMPAPSTPRTELLEQRTRELRGVRAQLEVVRYEKVVLEEQQM EKEELIKTLNKDFMATRNELAKLKNAAQNVEEVDVTAECTRNECDHLKRSLLREISQK EAIITESSDKLQDLYAEKSELAEQLRETGQSLLVCVDRIRDLEARLEELSRIASRRED AINSLERDKQELDRCLQEAREELHNRREVLNASSDLLNCSLSPNTTPENLASSVIDKQ LREKEHENAELREELQQQNDSLLDLSEVMVGFLQRHNVDQAEVLMPVTLEEQQTAPSI STIKSIFLEAVEKATRLQEQCDSQAANIDELLQKSQSLAQSLAEQEEHLVSAKARIDE LEQEAAEASRYHASELERRQKQCKNTREILEKQNHNLTAERDELERLIVKGDAHLDEI QRQLDEKEAQMTDLGVQIRELRVKNESLETRISTIEAERDSQESRLQQEQLHQQHLRS KYDLCRSQLNDAHAQIDDLTSQLNAHKVMLAEKLKEVEASNALLTMSLKLNEDAKVVH EKEQAKLQLRMDELSQEKEQLQVKMDELRKEKEQEQLQLKMSHQKEQEQLLFKMEELS QEKEHLQLSQKEEKEQLQLKINELSQEKEQAQLQIDELTLEKEQLQLSLKNEQEQLHS KFNELSQEKEQLQLKMDDLSQEKEQLQLSQKEEKEQLLLSLNNEQEQLNLKINELSEE KEKAQLKIEQLQLSLNNEQEQLQSKINDLSQEKEQSQLQLQLKINEKEQLQLTIDALR QQLSNLSQQTDGFLNRITGLIRGNNAVSSMVISSTGSGELSDRFEDIEALLKQQTLAF DTLETQVNDLLSQLAVLCRSNAEILHDSQLLVTKRNHDEQQRAQLAQTLELTAEKLRA EIDLQDAEIAMRDQQVAGMEKLLKKAMEKVEARLLKISPSSEFPGCTDVQSPQQIHHW MDHFFDLHDQILASRDTLESRYQANSKLTDQLARSKEQLEQQVQLLQDRVHANDQGPV VKQLSDTIANLEQVNDKLSKDNMKLHSLQLEMSQTVAKNASEVERRSTKIAQLEASDR RRSSDLFDCRRKQDEQKAELRAKDEKMAEMKEMYEKQIEELKATSDQRCKELEKETEG GNQDLLGNLKENEDKLAKQAVEHSQLLKATKEECELRCQELEKQLAQKDEEQSRLKTL EAECQQRCQELEKQLAEKDSQSANLVSEHETAVQFIKAELEEARYQENQMRIQDKELR QTIETHKQLLRESTSDLQDARLQEANLRQTIATHKQLMLEGGGSGGDSSEELSSLRSK LQEAEKRAEQLKTKLDKQTKELSKVKAAKQEEERKEQQQEELSELRGDLESAESRSAE LQTLYDDATEEIISLSNKLVEEEKRAEQHKLELGQLKEQLAIAENSTKELLNKREEEQ NLPTEVNAQLEITESSAKELLSLRYALVTHKLAEEQKLTEELKDELNKRHLELGTEAS RRAELNVLYDSAQKELIGLRTKLQEEQKLRDQLEEELMQQQKQLSDDASKEELLRLQS NLQNEQTLTNELKEQLSKAQLEASRTAELTALYDRSEQELFRLHSKLEDEEKHTERLK RELKRQSAELANAENNAKQTQNQAELETRASNLSLERDTLQREIHLVKERLIREEREF QVKLATLEDDIETLEAQRDQMKAELSQATALIQEKDENICKLNEQLSKQQLEIDSQSK EMAETNRQLAQQANEVLELMAQQEQMKTELSIASALLQEKNENICKLKEQLETLEKQR DQMKVNLSDATSLIQEKDENILKLREQLEMLEAQQEQMKTDLSNATSLIQEKDENICK LKEQLSKQQLEIDSQSLEMTQTKRQLAEKADEVLELQERLAIVDELQQRLESEVAGRK LAQQQLAELNERLADVQQELDGTRLIHDACQFELEEKTREIEVSREEAEQRIRGYQER VEQLEQQVVQCNEELAELRLTNVGPSDLGATYSKADGPESDVNLGQLRPEEANSKLAL DCQILQAKYRDAKDEIQRCEQKIKDQRLEMEGKLDKMKSKMPKKKKACTQSYFSVLPR VNEQIEQIPSKKEGKEEGAAAAAAAGTELERKLRQELEEIKRRGCDKNCKCTRNAFCL GATALTLLGTIFAMVLRFNEAKVAIVCDKPNEF" misc_feature <1079..3226 /gene="mud" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 2213..4876 /gene="mud" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 4313..6796 /gene="mud" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" polyA_site 7474 /gene="mud" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgacgcgcga aagaaatgtg tttgccggtg tttgttcgta tttagttacc tagttatcta 61 gtagtccctg tgctcgtcga atggaagtgt caaaattagt agttcgcccc gcgtagtccc 121 gtagtcagtg cctgaaaata ttccacacaa gcaagtcgtc gagctctgag ctggtgaaaa 181 aaaaacccta tatatttttc ttactttttt ttcggtcgtg ttttttttga tcaagtcccg 241 ttgctccgct agcaaagttc tattgttctg tttctgtttc tgttgtgcgt gcaaaagtcc 301 cgttttccgt tcgccaccta gtttaccctg caataccacc gatacaatgg acctgcgcat 361 gtggcgaaag atcctcgtcc gctggatcgt cgagtgccag ttcatcgacc acaacttcat 421 cactttggag cagtcggaca tcgaggcctt cttcttgatc tacatccaga atgcccagga 481 ggcgcaggag ggggctgggg aggaggagaa agagaaaaag gatgaggaga cggaggcgga 541 gcaggctcag cccgtggaac tccgctcgcc cctggcggcg ttcctccgag agcattaccc 601 ggagttcagt gcccacatga gtagccatgg gcacctggtg agctcggact acgtgttcgt 661 gtacacgctg ctcctgcagt acgcgtgcgt gaagcgtccc agcatgatct tccacagcat 721 ttgccagcgg ctgcccgctc ccatgcagca accgatggcc aatctcctgg accagacgac 781 taaggtacag cagctgacgc gccagaatct ccgccagata atcgccaatg tggtggttga 841 gaaggagaac ggcgactccc cagtcagtcc atgtcaaccc agcagcagca tctcccggag 901 tcccgaacag ctggccatgg ataacacacc tggcagctcc tcctcctcct ccatggccgc 961 cacatcgcct cagccgccga ccagcacgcc acagcaggcc taccaccatc gcgatcgtct 1021 gcgcgtccag gtttcgggca gcgacatgcc aatgccagct ccttcgactc cccggacgga 1081 gctactggag cagcgaacac gggagctgcg cggtgttcgc gcccagctgg aggtcgtgcg 1141 ctacgagaag gtggtgctcg aggagcagca gatggagaag gaggagttga tcaagacgct 1201 aaacaaagat ttcatggcca cccgcaatga actggccaaa ctgaagaatg ccgcccaaaa 1261 tgttgaggag gtcgatgtca ccgccgaatg cacgcgaaat gagtgcgatc atctgaagcg 1321 aagcctgctc agggaaatca gccagaagga ggccattata accgaatcca gcgataagtt 1381 gcaggatttg tacgccgaaa agtccgagct ggccgagcag ttaagggaga cgggtcaaag 1441 ccttctcgtg tgcgtggacc gcatccgcga tctggaggcg cgcctggagg aactcagccg 1501 aatcgcatct cgcagggaag atgcgatcaa ctcccttgag cgcgacaagc aggagttgga 1561 tcgttgtctt caggaggcgc gcgaggagtt gcacaatcgg cgggaggtcc ttaacgcatc 1621 atcggacctg ctcaactgtt ccctgtcgcc gaacaccacg cccgagaatc tggccagctc 1681 ggtaattgac aagcagttgc gcgagaagga gcacgagaac gctgagttgc gggaggagct 1741 ccagcagcag aacgactctc tgctggacct gagcgaggtc atggtgggtt tcctgcagag 1801 gcacaacgtc gatcaggctg aggttcttat gccagtgacg ctggaagagc agcagactgc 1861 tcccagcatt tcgacgatca agagtatttt tctggaggcg gtggaaaagg ccacgcggtt 1921 gcaggaacag tgcgacagtc aggctgcgaa tatcgatgag ctgctgcaga aaagccaatc 1981 gctagctcaa tcgctggctg aacaggagga gcacttggtc agtgcgaagg ccagaatcga 2041 tgagctggag caggaggctg cggaagccag tcgttaccat gccagcgaac tggaaagaag 2101 acaaaagcag tgcaagaaca cacgtgaaat actggaaaaa cagaatcaca atctaactgc 2161 cgaacgcgat gagctcgaga gattaatagt caagggagac gcgcacctgg acgagataca 2221 gaggcagctg gacgagaaag aagcccagat gaccgacttg ggtgtccaga ttcgcgagct 2281 gcgcgtcaag aacgagtctc tcgaaacgcg gatcagcacg atcgaggcgg aaagggacag 2341 ccaggaaagc cgtttgcagc aggagcagct ccaccagcag cacttgcgat ccaagtacga 2401 cctgtgccgc agccagctaa acgacgcgca cgcgcagatc gatgacttga ccagccaact 2461 gaatgcccac aaagtgatgc ttgccgagaa gctgaaagag gtggaagcta gcaatgctct 2521 cctaactatg tcccttaagc ttaacgagga tgcgaaggtg gtccacgaga aggagcaggc 2581 aaagcttcag cttaggatgg atgaactgag ccaggagaag gagcagcttc aggttaagat 2641 ggatgagctg aggaaggaga aggagcagga acagcttcag cttaagatga gccatcaaaa 2701 ggagcaggaa cagcttcttt ttaagatgga agagctgagc caggagaagg agcaccttca 2761 gcttagccag aaggaggaaa aggagcagct tcagcttaag atcaatgagc tgagccagga 2821 gaaggagcag gcgcaactcc agatagatga gctaaccctg gagaaagagc agctccaatt 2881 aagcctaaag aatgagcagg aacagcttca ttctaagttc aacgagctaa gccaggaaaa 2941 ggagcagctt cagcttaaga tggacgacct aagccaggaa aaagagcagc tccagcttag 3001 ccagaaggag gagaaggaac agctcctgct aagtctaaat aatgagcaag aacagcttaa 3061 tcttaagatc aacgagttga gcgaggagaa ggagaaggca caacttaaga tagagcaact 3121 ccagcttagc ctaaataatg agcaggaaca gctccagtct aagatcaacg acctgagcca 3181 ggaaaaagag cagtcacagc ttcaactgca gctgaagata aacgaaaagg agcagcttca 3241 gctgacgata gacgcgctga gacagcagct gagcaacttg agccaacaga cggacggttt 3301 cctcaaccgc attactggcc tcataagggg caacaatgcc gttagctcga tggtcatcag 3361 ctcgacggga tcgggggagc taagcgatcg tttcgaggac attgaggcgt tgctcaagca 3421 gcagacactc gcgttcgaca ctctggagac gcaggtgaat gacttgctaa gccaactggc 3481 cgtactttgt cgaagcaatg cagagatcct ccacgatagt cagctattgg tgaccaagcg 3541 caaccatgat gagcagcagc gggcgcaatt ggcccaaaca ctggaactca cagccgagaa 3601 gctgcgtgcc gagatagatc tacaggacgc ggagattgcc atgagggatc agcaggtggc 3661 cggaatggag aagctcctga agaaagcaat ggaaaaagta gaagctcgcc ttctgaaaat 3721 ctctcccagc tcggaattcc cgggatgcac tgatgtgcag agcccccagc agattcacca 3781 ctggatggat cactttttcg atttgcacga tcaaatatta gccagtcgtg atactctgga 3841 gtcgcgctac caggccaact cgaagctaac cgatcagttg gctcgttcca aggagcaact 3901 ggagcagcag gtgcaactgc tgcaggatcg agtccatgcc aacgatcagg ggccggtggt 3961 caagcagctg agcgacacca ttgccaatct ggagcaggtg aacgacaagc tgagcaagga 4021 caacatgaag ctgcatagcc tgcagctgga gatgagccag acggtggcca agaatgccag 4081 cgaagtggag cgtcggtcga ccaaaattgc tcagttggag gcctccgaca ggcggagatc 4141 cagcgatctg ttcgattgcc gcaggaagca ggacgaacag aaggctgagc tgcgcgcgaa 4201 ggacgagaaa atggccgaga tgaaggagat gtacgagaag cagattgagg agctcaaggc 4261 tacaagcgat cagcgctgca aggaactcga aaaggagacg gagggcggca atcaggattt 4321 gctgggtaat ctcaaggaaa atgaagataa gttggccaag caggcggttg agcacagtca 4381 acttttaaag gcaacgaaag aagagtgcga gctgcgttgc caagagctcg aaaagcagtt 4441 ggcgcagaag gatgaagagc agtctaggct aaaaaccttg gaagcggaat gccaacagcg 4501 ttgccaggaa ctcgagaagc agctagcgga gaaggattcg cagtcggcga atctcgtcag 4561 cgagcacgag accgccgttc agttcatcaa agcggagctg gaggaggctc gctaccagga 4621 gaatcagatg cgcatccagg acaaggaact ccgccagacc atcgagacgc acaagcagct 4681 gctcagagag tccacctccg atctgcagga tgctcgcctc caggaggcca acctgcgcca 4741 aaccattgcc acccacaagc aactaatgct ggagggcggc ggatccggcg gagactccag 4801 cgaggagctg tccagcttgc gttccaaact ccaggaggca gaaaagcggg ccgagcagct 4861 taaaaccaag ctggacaagc aaacgaagga gctatcgaag gtcaaggcag ctaaacaaga 4921 ggaggaaagg aaggagcagc aacaggagga gctgagcgaa cttaggggcg acttggaaag 4981 cgctgaaagt cgctccgcgg aattgcaaac cttatacgac gatgccaccg aggagataat 5041 cagcttgagc aataaactcg tggaggagga aaagcgtgcg gaacagcata agctagaact 5101 tggccagctg aaggaacagc tggcaatcgc tgaaaactcc acgaaggagt tgcttaacaa 5161 acgggaggaa gaacagaact tgccaactga ggtgaatgcc cagctggaaa tcactgaaag 5221 ctccgcgaag gagttgctca gcctgcgtta cgcactggtt acgcacaaac tggcggaaga 5281 acaaaagctg acggaggagc tcaaagacga gctgaacaaa cgacacctgg agctgggcac 5341 cgaagcaagt cgcagggcgg aactgaacgt gctgtacgac agcgcccaaa aggagctaat 5401 cggtctaagg actaagctcc aggaggaaca aaagctaagg gatcagctgg aagaagagct 5461 gatgcagcaa cagaagcagc tgagtgatga tgcctctaag gaggagcttc tccgcctgca 5521 gagcaacctt cagaacgaac aaaccctaac caatgagctc aaggagcagc tgagcaaggc 5581 ccaactggaa gccagtcgaa ctgcggaact aaccgctttg tatgaccgct ccgagcagga 5641 gctattccgt ctgcactcta agctggagga cgaggagaag catacggagc ggcttaaacg 5701 agagctgaag cggcaaagcg cagagctggc caacgcggag aataatgcta aacagactca 5761 aaatcaggct gaactcgaaa cgcgtgcttc gaatttatca ctcgaaaggg atactctgca 5821 gcgggagatt cacctggtca aggagcgttt aatcagggaa gagcgcgagt tccaggtgaa 5881 actggccact ctagaggacg acatagaaac cttggaggcg cagcgggatc agatgaaggc 5941 agaactttcc caagccaccg cattaatcca ggagaaggat gagaatatct gtaaactaaa 6001 cgagcagctt tcgaagcagc aacttgagat tgatagccag tccaaggaaa tggcagaaac 6061 caatcgacag ttggcgcagc aagctaacga ggtcttggaa ctgatggctc agcaggagca 6121 gatgaaaacc gagctttcca ttgcctccgc gttgcttcag gagaaaaatg agaatatctg 6181 taaactgaag gagcagctag agacgttgga gaagcagcgg gatcagatga aagtcaatct 6241 ttccgatgcc acctcattaa tccaggagaa ggatgagaat atccttaaac tgagggagca 6301 gctagagatg ttggaggcgc agcaggagca gatgaaaacg gatctttcca atgccacctc 6361 attaatccag gagaaggatg agaatatctg taaactgaag gaacaacttt caaagcagca 6421 acttgagatt gatagccagt ccttggaaat gacccaaacc aagcgacagc tggcggagaa 6481 ggctgacgag gtgttggaac tgcaggaacg cctggcaatt gtcgacgagt tgcagcaacg 6541 cctggagtct gaggtcgccg gacgtaaact ggcccagcag caattagccg aactcaacga 6601 gcggctagcc gatgtccagc aggagttgga tggcacacgt cttatccatg atgcctgtca 6661 gttcgagctg gaggagaaga cgcgagagat cgaggtcagt cgcgaggagg ccgagcagcg 6721 cattcgtggc tatcaggagc gagtggagca actggaacag caggtggttc agtgcaacga 6781 ggagctggcc gagctgagat tgaccaacgt cggtccgagt gatctcggcg ccacctacag 6841 caaggcggat ggccccgaat ccgatgtcaa tcttggccag ctgcgcccgg aggaggccaa 6901 cagcaagctg gccctggact gccagattct gcaggccaag tatcgcgatg ccaaggacga 6961 aatccagcga tgcgagcaga agatcaagga tcagcgtctc gagatggagg gcaagctgga 7021 caagatgaag tccaagatgc ccaaaaagaa aaaggcatgt acgcagtcgt atttttcggt 7081 ccttccgagg gttaatgaac agatcgaaca gatcccctcg aaaaaagagg ggaaagaaga 7141 aggggcagca gcagcagcag cagcggggac agaactagaa cgaaaactaa gacaagaact 7201 agaagaaatc aagcggcgtg gatgcgataa gaattgcaag tgcacccgaa atgcattttg 7261 cctgggtgcc accgccttga ctctattggg aaccatcttt gccatggtcc tgcgcttcaa 7321 tgaagccaag gtggccatcg tttgtgacaa acccaacgag ttctagaggc tgagatgata 7381 atagaaccct tagtagtttt tgttattagc tgtttaaatg ttgtttgtac ttttatatat 7441 tttatttaaa tatattttat atatttctga taaa