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LOCUS XM_070219090 8061 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_070219090 VERSION XM_070219090.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8061 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8061 /gene="mud" /note="mushroom body defect; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108056082" CDS 350..7888 /gene="mud" /codon_start=1 /product="uncharacterized protein mud isoform X3" /protein_id="XP_070075191.1" /db_xref="GeneID:108056082" /translation="MDLRMWRKILVRWIVECQFIDHNFITLEQSDIEAFFLIYIQNAQ EAQEGAGEEEKEKKDEETEAEQAQPVELRSPLAAFLREHYPEFSAHMSSHGHLVSSDY VFVYTLLLQYACVKRPSMIFHSICQRLPAPMQQPMANLLDQTTKVQQLTRQNLRQIIA NVVVEKENGDSPVSPCQPSSSISRSPEQLAMDNTPGSSSSSSMAATSPQPPTSTPQQA YHHRDRLRVQVSGSDMPMPAPSTPRTELLEQRTRELRGVRAQLEVVRYEKVVLEEQQM EKEELIKTLNKDFMATRNELAKLKNAAQNVEEVDVTAECTRNECDHLKRSLLREISQK EAIITESSDKLQDLYAEKSELAEQLRETGQSLLVCVDRIRDLEARLEELSRIASRRED AINSLERDKQELDRCLQEAREELHNRREVLNASSDLLNCSLSPNTTPENLASSVIDKQ LREKEHENAELREELQQQNDSLLDLSEVMVGFLQRHNVDQAEVLMPVTLEEQQTAPSI STIKSIFLEAVEKATRLQEQCDSQAANIDELLQKSQSLAQSLAEQEEHLVSAKARIDE LEQEAAEASRYHASELERRQKQCKNTREILEKQNHNLTAERDELERLIVKGDAHLDEI QRQLDEKEAQMTDLGVQIRELRVKNESLETRISTIEAERDSQESRLQQEQLHQQHLRS KYDLCRSQLNDAHAQIDDLTSQLNAHKVMLAEKLKEVEASNALLTMSLKLNEDAKVVH EKEQAKLQLRMDELSQEKEQLQVKMDELRKEKEQEQLQLKMSHQKEQEQLLFKMEELS QEKEHLQLSQKEEKEQLQLKINELSQEKEQAQLQIDELTLEKEQLQLSLKNEQEQLHS KFNELSQEKEQLQLKMDDLSQEKEQLQLSQKEEKEQLLLSLNNEQEQLNLKINELSEE KEKAQLKIEQLQLSLNNEQEQLQSKINDLSQEKEQSQLQLQLKINEKEQLQLTIDALR QQLSNLSQQTDGFLNRITGLIRGNNAVSSMVISSTGSGELSDRFEDIEALLKQQTLAF DTLETQVNDLLSQLAVLCRSNAEILHDSQLLVTKRNHDEQQRAQLAQTLELTAEKLRA EIDLQDAEIAMRDQQVAGMEKLLKKAMEKVEARLLKISPSSEFPGCTDVQSPQQIHHW MDHFFDLHDQILASRDTLESRYQANSKLTDQLARSKEQLEQQVQLLQDRVHANDQGPV VKQLSDTIANLEQVNDKLSKDNMKLHSLQLEMSQTVAKNASEVERRSTKIAQLEASDR RRSSDLFDCRRKQDEQKAELRAKDEKMAEMKEMYEKQIEELKATSDQRCKELEKETEG GNQDLLGNLKENEDKLAKQAVEHSQLLKATKEECELRCQELEKQLAQKDEEQSRLKTL EAECQQRCQELEKQLAEKDSQSANLVSEHETAVQFIKAELEEARYQENQMRIQDKELR QTIETHKQLLRESTSDLQDARLQEANLRQTIATHKQLMLEGGGSGGDSSEELSSLRSK LQEAEKRAEQLKTKLDKQTKELSKVKAAKQEEERKEQQQEELSELRGDLESAESRSAE LQTLYDDATEEIISLSNKLVEEEKRAEQHKLELGQLKEQLAIAENSTKELLNKREEEQ NLPTEVNAQLEITESSAKELLSLRYALVTHKLAEEQKLTEELKDELNKRHLELGTEAS RRAELNVLYDSAQKELIGLRTKLQEEQKLRDQLEEELMQQQKQLSDDASKEELLRLQS NLQNEQTLTNELKEQLSKAQLEASRTAELTALYDRSEQELFRLHSKLEDEEKHTERLK RELKRQSAELANAENNAKQTQNQAELETRASNLSLERDTLQREIHLVKERLIREEREF QVKLATLEDDIETLEAQRDQMKAELSQATALIQEKDENICKLNEQLSKQQLEIDSQSK EMAETNRQLAQQANEVLELMAQQEQMKTELSIASALLQEKNENICKLKEQLETLEKQR DQMKVNLSDATSLIQEKDENILKLREQLEMLEAQQEQMKTDLSNATSLIQEKDENICK LKEQLSKQQLEIDSQSLEMTQTKRQLAEKADEVLELQERLAIVDELQQRLESEVAGRK LAQQQLAELNERLADVQQELDGTRLIHDACQFELEEKTREIEVSREEAEQRIRGYQER VEQLEQQVVQCNEELAELRLTNVGPSDLGATYSKADGPESDVNLGQLRPEEANSKLAL DCQILQAKYRDAKDEIQRCEQKIKDQRLEMEGKLDKMKSKMRSLYTAEVTRMKEKQER DAAKSAAELEALTAQNAKYEEHTRKLSNQIVRLNEKVLEQQKQHAIISTKLRHLQMQP AVSEAKGISSSSAAASSTEDWQPFKRPNAPSSNLAMEDEEGEVFNNTYLTDLKLGRVP TDMTAEELIYRNSLQPPHLKSTYAAQYDLGSQDEDLKDGPHSLDDSMSALLSSSSTGA RKKSMGTHYKRPGPPTPSKNGGRLSFGSSEPPREILREFGGDHHNHNSNTSKTPARFK FLTQRFSVGSSTLPRDENSPPKRRLSNMFKRK" misc_feature <1082..3229 /gene="mud" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 2216..4879 /gene="mud" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 4316..6799 /gene="mud" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" ORIGIN 1 aaacgacgcg cgaaagaaat gtgtttgccg gtgtttgttc gtatttagtt acctagttat 61 ctagtagtcc ctgtgctcgt cgaatggaag tgtcaaaatt agtagttcgc cccgcgtagt 121 cccgtagtca gtgcctgaaa atattccaca caagcaagtc gtcgagctct gagctggtga 181 aaaaaaaacc ctatatattt ttcttacttt tttttcggtc gtgttttttt tgatcaagtc 241 ccgttgctcc gctagcaaag ttctattgtt ctgtttctgt ttctgttgtg cgtgcaaaag 301 tcccgttttc cgttcgccac ctagtttacc ctgcaatacc accgatacaa tggacctgcg 361 catgtggcga aagatcctcg tccgctggat cgtcgagtgc cagttcatcg accacaactt 421 catcactttg gagcagtcgg acatcgaggc cttcttcttg atctacatcc agaatgccca 481 ggaggcgcag gagggggctg gggaggagga gaaagagaaa aaggatgagg agacggaggc 541 ggagcaggct cagcccgtgg aactccgctc gcccctggcg gcgttcctcc gagagcatta 601 cccggagttc agtgcccaca tgagtagcca tgggcacctg gtgagctcgg actacgtgtt 661 cgtgtacacg ctgctcctgc agtacgcgtg cgtgaagcgt cccagcatga tcttccacag 721 catttgccag cggctgcccg ctcccatgca gcaaccgatg gccaatctcc tggaccagac 781 gactaaggta cagcagctga cgcgccagaa tctccgccag ataatcgcca atgtggtggt 841 tgagaaggag aacggcgact ccccagtcag tccatgtcaa cccagcagca gcatctcccg 901 gagtcccgaa cagctggcca tggataacac acctggcagc tcctcctcct cctccatggc 961 cgccacatcg cctcagccgc cgaccagcac gccacagcag gcctaccacc atcgcgatcg 1021 tctgcgcgtc caggtttcgg gcagcgacat gccaatgcca gctccttcga ctccccggac 1081 ggagctactg gagcagcgaa cacgggagct gcgcggtgtt cgcgcccagc tggaggtcgt 1141 gcgctacgag aaggtggtgc tcgaggagca gcagatggag aaggaggagt tgatcaagac 1201 gctaaacaaa gatttcatgg ccacccgcaa tgaactggcc aaactgaaga atgccgccca 1261 aaatgttgag gaggtcgatg tcaccgccga atgcacgcga aatgagtgcg atcatctgaa 1321 gcgaagcctg ctcagggaaa tcagccagaa ggaggccatt ataaccgaat ccagcgataa 1381 gttgcaggat ttgtacgccg aaaagtccga gctggccgag cagttaaggg agacgggtca 1441 aagccttctc gtgtgcgtgg accgcatccg cgatctggag gcgcgcctgg aggaactcag 1501 ccgaatcgca tctcgcaggg aagatgcgat caactccctt gagcgcgaca agcaggagtt 1561 ggatcgttgt cttcaggagg cgcgcgagga gttgcacaat cggcgggagg tccttaacgc 1621 atcatcggac ctgctcaact gttccctgtc gccgaacacc acgcccgaga atctggccag 1681 ctcggtaatt gacaagcagt tgcgcgagaa ggagcacgag aacgctgagt tgcgggagga 1741 gctccagcag cagaacgact ctctgctgga cctgagcgag gtcatggtgg gtttcctgca 1801 gaggcacaac gtcgatcagg ctgaggttct tatgccagtg acgctggaag agcagcagac 1861 tgctcccagc atttcgacga tcaagagtat ttttctggag gcggtggaaa aggccacgcg 1921 gttgcaggaa cagtgcgaca gtcaggctgc gaatatcgat gagctgctgc agaaaagcca 1981 atcgctagct caatcgctgg ctgaacagga ggagcacttg gtcagtgcga aggccagaat 2041 cgatgagctg gagcaggagg ctgcggaagc cagtcgttac catgccagcg aactggaaag 2101 aagacaaaag cagtgcaaga acacacgtga aatactggaa aaacagaatc acaatctaac 2161 tgccgaacgc gatgagctcg agagattaat agtcaaggga gacgcgcacc tggacgagat 2221 acagaggcag ctggacgaga aagaagccca gatgaccgac ttgggtgtcc agattcgcga 2281 gctgcgcgtc aagaacgagt ctctcgaaac gcggatcagc acgatcgagg cggaaaggga 2341 cagccaggaa agccgtttgc agcaggagca gctccaccag cagcacttgc gatccaagta 2401 cgacctgtgc cgcagccagc taaacgacgc gcacgcgcag atcgatgact tgaccagcca 2461 actgaatgcc cacaaagtga tgcttgccga gaagctgaaa gaggtggaag ctagcaatgc 2521 tctcctaact atgtccctta agcttaacga ggatgcgaag gtggtccacg agaaggagca 2581 ggcaaagctt cagcttagga tggatgaact gagccaggag aaggagcagc ttcaggttaa 2641 gatggatgag ctgaggaagg agaaggagca ggaacagctt cagcttaaga tgagccatca 2701 aaaggagcag gaacagcttc tttttaagat ggaagagctg agccaggaga aggagcacct 2761 tcagcttagc cagaaggagg aaaaggagca gcttcagctt aagatcaatg agctgagcca 2821 ggagaaggag caggcgcaac tccagataga tgagctaacc ctggagaaag agcagctcca 2881 attaagccta aagaatgagc aggaacagct tcattctaag ttcaacgagc taagccagga 2941 aaaggagcag cttcagctta agatggacga cctaagccag gaaaaagagc agctccagct 3001 tagccagaag gaggagaagg aacagctcct gctaagtcta aataatgagc aagaacagct 3061 taatcttaag atcaacgagt tgagcgagga gaaggagaag gcacaactta agatagagca 3121 actccagctt agcctaaata atgagcagga acagctccag tctaagatca acgacctgag 3181 ccaggaaaaa gagcagtcac agcttcaact gcagctgaag ataaacgaaa aggagcagct 3241 tcagctgacg atagacgcgc tgagacagca gctgagcaac ttgagccaac agacggacgg 3301 tttcctcaac cgcattactg gcctcataag gggcaacaat gccgttagct cgatggtcat 3361 cagctcgacg ggatcggggg agctaagcga tcgtttcgag gacattgagg cgttgctcaa 3421 gcagcagaca ctcgcgttcg acactctgga gacgcaggtg aatgacttgc taagccaact 3481 ggccgtactt tgtcgaagca atgcagagat cctccacgat agtcagctat tggtgaccaa 3541 gcgcaaccat gatgagcagc agcgggcgca attggcccaa acactggaac tcacagccga 3601 gaagctgcgt gccgagatag atctacagga cgcggagatt gccatgaggg atcagcaggt 3661 ggccggaatg gagaagctcc tgaagaaagc aatggaaaaa gtagaagctc gccttctgaa 3721 aatctctccc agctcggaat tcccgggatg cactgatgtg cagagccccc agcagattca 3781 ccactggatg gatcactttt tcgatttgca cgatcaaata ttagccagtc gtgatactct 3841 ggagtcgcgc taccaggcca actcgaagct aaccgatcag ttggctcgtt ccaaggagca 3901 actggagcag caggtgcaac tgctgcagga tcgagtccat gccaacgatc aggggccggt 3961 ggtcaagcag ctgagcgaca ccattgccaa tctggagcag gtgaacgaca agctgagcaa 4021 ggacaacatg aagctgcata gcctgcagct ggagatgagc cagacggtgg ccaagaatgc 4081 cagcgaagtg gagcgtcggt cgaccaaaat tgctcagttg gaggcctccg acaggcggag 4141 atccagcgat ctgttcgatt gccgcaggaa gcaggacgaa cagaaggctg agctgcgcgc 4201 gaaggacgag aaaatggccg agatgaagga gatgtacgag aagcagattg aggagctcaa 4261 ggctacaagc gatcagcgct gcaaggaact cgaaaaggag acggagggcg gcaatcagga 4321 tttgctgggt aatctcaagg aaaatgaaga taagttggcc aagcaggcgg ttgagcacag 4381 tcaactttta aaggcaacga aagaagagtg cgagctgcgt tgccaagagc tcgaaaagca 4441 gttggcgcag aaggatgaag agcagtctag gctaaaaacc ttggaagcgg aatgccaaca 4501 gcgttgccag gaactcgaga agcagctagc ggagaaggat tcgcagtcgg cgaatctcgt 4561 cagcgagcac gagaccgccg ttcagttcat caaagcggag ctggaggagg ctcgctacca 4621 ggagaatcag atgcgcatcc aggacaagga actccgccag accatcgaga cgcacaagca 4681 gctgctcaga gagtccacct ccgatctgca ggatgctcgc ctccaggagg ccaacctgcg 4741 ccaaaccatt gccacccaca agcaactaat gctggagggc ggcggatccg gcggagactc 4801 cagcgaggag ctgtccagct tgcgttccaa actccaggag gcagaaaagc gggccgagca 4861 gcttaaaacc aagctggaca agcaaacgaa ggagctatcg aaggtcaagg cagctaaaca 4921 agaggaggaa aggaaggagc agcaacagga ggagctgagc gaacttaggg gcgacttgga 4981 aagcgctgaa agtcgctccg cggaattgca aaccttatac gacgatgcca ccgaggagat 5041 aatcagcttg agcaataaac tcgtggagga ggaaaagcgt gcggaacagc ataagctaga 5101 acttggccag ctgaaggaac agctggcaat cgctgaaaac tccacgaagg agttgcttaa 5161 caaacgggag gaagaacaga acttgccaac tgaggtgaat gcccagctgg aaatcactga 5221 aagctccgcg aaggagttgc tcagcctgcg ttacgcactg gttacgcaca aactggcgga 5281 agaacaaaag ctgacggagg agctcaaaga cgagctgaac aaacgacacc tggagctggg 5341 caccgaagca agtcgcaggg cggaactgaa cgtgctgtac gacagcgccc aaaaggagct 5401 aatcggtcta aggactaagc tccaggagga acaaaagcta agggatcagc tggaagaaga 5461 gctgatgcag caacagaagc agctgagtga tgatgcctct aaggaggagc ttctccgcct 5521 gcagagcaac cttcagaacg aacaaaccct aaccaatgag ctcaaggagc agctgagcaa 5581 ggcccaactg gaagccagtc gaactgcgga actaaccgct ttgtatgacc gctccgagca 5641 ggagctattc cgtctgcact ctaagctgga ggacgaggag aagcatacgg agcggcttaa 5701 acgagagctg aagcggcaaa gcgcagagct ggccaacgcg gagaataatg ctaaacagac 5761 tcaaaatcag gctgaactcg aaacgcgtgc ttcgaattta tcactcgaaa gggatactct 5821 gcagcgggag attcacctgg tcaaggagcg tttaatcagg gaagagcgcg agttccaggt 5881 gaaactggcc actctagagg acgacataga aaccttggag gcgcagcggg atcagatgaa 5941 ggcagaactt tcccaagcca ccgcattaat ccaggagaag gatgagaata tctgtaaact 6001 aaacgagcag ctttcgaagc agcaacttga gattgatagc cagtccaagg aaatggcaga 6061 aaccaatcga cagttggcgc agcaagctaa cgaggtcttg gaactgatgg ctcagcagga 6121 gcagatgaaa accgagcttt ccattgcctc cgcgttgctt caggagaaaa atgagaatat 6181 ctgtaaactg aaggagcagc tagagacgtt ggagaagcag cgggatcaga tgaaagtcaa 6241 tctttccgat gccacctcat taatccagga gaaggatgag aatatcctta aactgaggga 6301 gcagctagag atgttggagg cgcagcagga gcagatgaaa acggatcttt ccaatgccac 6361 ctcattaatc caggagaagg atgagaatat ctgtaaactg aaggaacaac tttcaaagca 6421 gcaacttgag attgatagcc agtccttgga aatgacccaa accaagcgac agctggcgga 6481 gaaggctgac gaggtgttgg aactgcagga acgcctggca attgtcgacg agttgcagca 6541 acgcctggag tctgaggtcg ccggacgtaa actggcccag cagcaattag ccgaactcaa 6601 cgagcggcta gccgatgtcc agcaggagtt ggatggcaca cgtcttatcc atgatgcctg 6661 tcagttcgag ctggaggaga agacgcgaga gatcgaggtc agtcgcgagg aggccgagca 6721 gcgcattcgt ggctatcagg agcgagtgga gcaactggaa cagcaggtgg ttcagtgcaa 6781 cgaggagctg gccgagctga gattgaccaa cgtcggtccg agtgatctcg gcgccaccta 6841 cagcaaggcg gatggccccg aatccgatgt caatcttggc cagctgcgcc cggaggaggc 6901 caacagcaag ctggccctgg actgccagat tctgcaggcc aagtatcgcg atgccaagga 6961 cgaaatccag cgatgcgagc agaagatcaa ggatcagcgt ctcgagatgg agggcaagct 7021 ggacaagatg aagtccaaga tgcgctccct gtacacggcg gaggtgacgc gcatgaagga 7081 gaaacaggaa cgggatgcgg ccaaaagtgc cgctgaattg gaggccttga cagcccagaa 7141 tgccaagtac gaggagcaca cgcgcaagct gtccaaccag attgtccggc tcaacgagaa 7201 ggtgctggag caacagaagc agcacgccat catcagcacc aagttgcgcc acctgcagat 7261 gcagccagcc gtcagcgagg caaaggggat tagtagttct tcagcggctg catcttcgac 7321 tgaggattgg cagcccttca agcgacccaa tgctccatcc tccaatttgg ccatggaaga 7381 tgaggagggc gaggtgttca acaacactta tttgacggat ttaaaactag gacgtgttcc 7441 cacagacatg acggcggagg aacttatata cagaaactca ttgcagccgc cgcatctgaa 7501 gagcacctat gcggcccagt acgatctggg cagccaggac gaggatctta aagacggacc 7561 gcacagtctt gacgacagca tgagtgcgct gctgagttct tcgagcaccg gagctcgcaa 7621 aaagtccatg ggcacgcact acaagcgacc tggaccaccg acgccgagca agaacggcgg 7681 acgtttgtcc tttggcagct cagagccacc gcgcgaaatc ctgcgggaat ttggcggcga 7741 ccatcacaac cacaatagca acacctccaa gacgcccgcg cgcttcaagt tcctcaccca 7801 gcgcttcagc gttggcagca gcacgctgcc ccgggacgag aactctccgc ccaagcgacg 7861 tctcagcaac atgttcaagc gcaagtagta ttatcctact catcgccgat cttcaagcgg 7921 atataatttt cggataaaat ttaaatcctc atttattatt ttgacttaag cctttttttt 7981 ttcctgtttt cctctcagta aaactcgttt tggatataga aatctatgtt aaagaatata 8041 tatatatatg ttttaatggt a