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LOCUS XM_070219060 2089 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_070219060 VERSION XM_070219060.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2089 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2089 /gene="Cda4" /note="chitin deacetylase Cda4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108065126" CDS 16..1470 /gene="Cda4" /codon_start=1 /product="chitin deacetylase 1 isoform X1" /protein_id="XP_070075161.1" /db_xref="GeneID:108065126" /translation="MIEVQVRFPAEAKTLIGQGKEKEEFQCPSHIANGNYADPATCRR FYQCVDGFPYLNRCPSGLFFDDLQKYCTFKDEAKCGPLPTTPAPATEAPADTAQRCNT EECALPYCFCSKDGTQIPGDLEAEKIPQIIMLTFDGAVNLNNYQHYQKIFDGKRKNPN GCLIRGTFFMSHEYSNYQQIQHLGYYGHEIGTESISQQQGLQDKGYEEWVGEMIGMRE ILRHFANVSVNDVVGMRAPFLKPGRNTQYKVLEDFGYIYDSSITVPPVAVPVWPYTLD YKISHECKSGTCPSRTFPGVWEVPLNTHYVEGYEGGHCPYLDQCVLHNLDEEEVLQWL QEDFSRYYEQNKAPYMMPFHTNWFQTKPLENGLHKFLDWALELPDVYILTVTQMLQYM TDPKELRDISQIEAWKCDKSVAVAPKPCNIWQTCALPFKIPEQNVTDTRYMETCRECP NVYPWLGDAGGTGIAGRDNYIFNGGTDSSSESTN" misc_feature 109..252 /gene="Cda4" /note="Chitin binding Peritrophin-A domain; Region: CBM_14; pfam01607" /db_xref="CDD:426342" misc_feature 400..1200 /gene="Cda4" /note="Putative catalytic domain of chitin deacetylase-like proteins with additional chitin-binding peritrophin-A domain (ChBD) and/or a low-density lipoprotein receptor class A domain (LDLa); Region: CE4_CDA_like_1; cd10974" /db_xref="CDD:200596" misc_feature order(418..429,592..609,718..720,724..726,796..798, 1069..1071,1075..1077) /gene="Cda4" /note="NodB motif; other site" /db_xref="CDD:200596" misc_feature order(424..429,592..594,604..606,724..732,1075..1077) /gene="Cda4" /note="putative active site [active]" /db_xref="CDD:200596" polyA_site 2089 /gene="Cda4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gagtgctcga ctccgatgat tgaggtccaa gttcgattcc cagcggaggc caaaaccctg 61 attggccagg gaaaggagaa ggaggagttc cagtgtccct cacacattgc caatggcaac 121 tacgctgatc cggcgacctg tcgtcgtttt taccagtgcg tcgatggatt tccgtatttg 181 aaccgctgtc catccggact tttcttcgat gatctgcaga agtactgcac attcaaggat 241 gaggccaagt gcggtcctct accaacaaca cccgcccctg ccaccgaggc cccggctgac 301 accgcccagc ggtgcaacac ggaggagtgc gccctgccct actgcttctg ctccaaggac 361 ggcacccaga ttcccggcga cctggaggcc gaaaagatcc cccaaatcat tatgctcacc 421 ttcgatgggg cggtgaatct gaataactac cagcattacc agaagatttt cgacggcaag 481 cgcaagaatc ccaacggctg tctgattcgg ggcaccttct tcatgtccca cgagtacagc 541 aactaccagc agatccagca cctgggatac tatggacacg aaatcggaac ggagagcatc 601 tcgcagcagc aggggctgca ggacaagggc tacgaggagt gggtgggcga gatgattggc 661 atgcgtgaaa tcctgcgaca cttcgccaat gtgtccgtca acgatgtggt cggcatgcga 721 gcccccttcc tcaagcctgg ccgcaacacc caatacaagg tgctggagga cttcgggtac 781 atctatgaca gttcgatcac cgttccaccg gttgccgtac cagtgtggcc gtacaccctt 841 gattacaaga tctcgcacga gtgcaagagc ggcacatgtc cgtcgcgcac cttcccaggc 901 gtttgggagg tgccccttaa cacccattac gtggagggat acgagggtgg tcactgtccc 961 tacctggacc agtgcgtcct gcacaacctc gacgaggagg aggtgctaca gtggctgcag 1021 gaggacttct cgcgctacta cgaacagaac aaggcgccct acatgatgcc cttccacacc 1081 aactggttcc agacaaagcc actggagaac ggactgcaca agttcctcga ctgggccctc 1141 gaactacctg acgtctacat cctaaccgtc acccagatgc tgcagtacat gaccgatccc 1201 aaggagctgc gcgacattag ccaaatcgag gcgtggaaat gcgacaagag cgtagcggtg 1261 gccccgaagc cctgcaacat ctggcaaacg tgtgcgctgc ccttcaagat ccccgaacag 1321 aacgtgacgg atacgcgcta tatggagacc tgccgggaat gccccaatgt gtatccctgg 1381 ctgggcgacg ccggcggtac gggaatcgct ggtcgggata actatatctt caacggaggc 1441 acagatagtt ccagcgaatc taccaattag agaagatcct accttttcac tccttttttt 1501 ccttttcatc tctcttactc gtaaagtaaa agagtgtatt atattcgttg aaaagtaaaa 1561 aattaaaatt atgaagcctt tctattttta aacaggctca ctagccttgt ccgtctgtcc 1621 gtttgaacga tgagatctcg ggaactataa atgccaggat attaaatatg atgattgtcg 1681 ggcttacaac cttttagttt ccttttacca agccaataga attacactta acgtcattga 1741 aattgattaa cgagtataag atagtcgaga cactcgacta tagtcttctt tcatgttttt 1801 tttttttgtg tcatgtctct tattgttgtt gaatttgttt ttctctatat tgaactctca 1861 ctaatttctc acacatgtgc cagtcatcgt gatgcaataa tgagctgctg cctttttata 1921 aataactctt agtttgttct tcgtttttcc tgtagtgctg tgtgcttcac agtgtacttc 1981 tctagtagtt cttaagcgaa atcgtgtcaa attgttctta gtttgtaagc gacaaaatgt 2041 ttgtaaaaaa tcacattttt tgtatgaata aaatgaatat ttttctaaa