Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_070219049 2241 bp mRNA linear INV 09-DEC-2024 (LOC138913893), mRNA. ACCESSION XM_070219049 VERSION XM_070219049.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; includes ab initio. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2241 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2241 /gene="LOC138913893" /note="uncharacterized LOC138913893; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:138913893" CDS 1..2241 /gene="LOC138913893" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_070075150.1" /db_xref="GeneID:138913893" /translation="MDDGQDNGNVSPASPDSFETPHGSGNVTPVVETISTCKLPAFWK QHVPLWFLQVEAQFQCNRITSDNTRYYHLLSALDVEVMSEVSDVLAQPPDCNKYEHLK STIIQRFTESPDRQLQRALLELDLGDKKPSQLLRQMTTLAGGRASSDALRVRWLSQLP QHVQRGLKVLRSASIEEQTELADILMEDKTTSFVMAAGHSSSQSRGNKFDQPHSVSRD SKDEVKRELAAIKTSMALLQNNWLFAALFVGPVTGKLKKLSSVQAADDSRSPNARLSK EYRLHIYDRCTNIKFLIDSGSVISLIPLSLVKKSLCRKDEFKLYAANTSVIDTYGTLN LTFGLNLQRKFSWQFVVANVQSAIIGADFLTYHGLIIDLKGKRLIDSLTSTSTKGELT ETKVYNISTINSHNFAEVDQPYSNLLGLFSDITRPNKPPAKRVSNDVAHYIETTGPPV FDKPRRLTGEKLKAARRDFDLLIQQGVIRPSSSQWASPIHLVPKKNNEWRTTGDYRKL NACTVPDRYPTPHGEDILQRLHGCTVFSTLDLVRAYHQIPVAMGDISKTAVTTPFGLF EFVGMPPGLRNAAQTFQRHMDNLLRGVPFVGCYIDDIIVFSKTHEEHLQHLQTIFKIL QDNHLQINPQKCRFAQAQIPLTDYLKGATKNDKREIAWTPDAESAFHTCKLGISKAVS STFLSPSAQLSLKTDASDTAIGAALEQLDGNVWRPPPRYSHMGADLNEQPWTAAQPVV PKLQAR" misc_feature 838..1107 /gene="LOC138913893" /note="Cellular and retroviral pepsin-like aspartate proteases; Region: pepsin_retropepsin_like; cl11403" /db_xref="CDD:472175" misc_feature order(880..882,886..888,892..894,955..963,1072..1074) /gene="LOC138913893" /note="inhibitor binding site [active]" /db_xref="CDD:133158" misc_feature 880..888 /gene="LOC138913893" /note="catalytic motif [active]" /db_xref="CDD:133158" misc_feature 880..882 /gene="LOC138913893" /note="Catalytic residue [active]" /db_xref="CDD:133158" misc_feature order(955..966,976..987) /gene="LOC138913893" /note="Active site flap [active]" /db_xref="CDD:133158" misc_feature 1426..1935 /gene="LOC138913893" /note="Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of...; Region: RT_LTR; cd01647" /db_xref="CDD:238825" misc_feature order(1615..1632,1717..1722,1795..1797,1801..1806) /gene="LOC138913893" /note="putative active site [active]" /db_xref="CDD:238825" misc_feature order(1615..1632,1717..1719,1801..1803) /gene="LOC138913893" /note="putative NTP binding site [chemical binding]; other site" /db_xref="CDD:238825" misc_feature 1720..1722 /gene="LOC138913893" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:238825" misc_feature 1984..>2151 /gene="LOC138913893" /note="RNase H-like domain found in reverse transcriptase; Region: RT_RNaseH_2; pfam17919" /db_xref="CDD:465567" ORIGIN 1 atggatgacg gccaagataa tggaaatgtt tcaccagcct cgcccgactc gtttgagact 61 ccacatggta gcggcaatgt cacgccggtt gtggagacaa tcagcacatg caagctccct 121 gcattttgga aacaacatgt tccgttatgg tttctccaag tcgaggcgca attccaatgc 181 aaccgtatca catcggacaa tactcgctac tatcacctcc ttagcgcttt agacgttgag 241 gttatgtccg aagtctctga tgttctcgct cagccaccgg attgcaataa gtatgagcac 301 cttaagtcga ccatcattca gcgctttaca gaatccccgg atcgacaact gcagcgtgcc 361 ttacttgagc tagacctcgg ggacaagaag ccctctcagc tattacggca aatgacgaca 421 cttgctggcg gtcgcgcatc cagtgacgcc ttacgagttc gatggctctc ccaactccct 481 cagcatgtac agcgaggttt gaaagttctg cgttcagctt ctatagaaga gcaaactgaa 541 cttgccgaca ttctcatgga ggacaaaacc acttctttcg ttatggctgc tggacattct 601 tcatctcaat cgcgaggaaa caaattcgac caaccccact cggtttctag ggactccaag 661 gacgaagtaa aacgcgaact ggccgctatc aagacttcaa tggccctttt gcaaaataat 721 tggctgttcg ccgccctgtt cgtgggccca gtcacaggga aactaaaaaa gctgtcatcc 781 gtacaggcag ccgatgacag cagaagtccg aatgctcgcc tctctaaaga atatcgacta 841 cacatttacg atcgctgcac taacatcaaa tttcttattg attccggatc agtcatctca 901 ctcattccgc tttcattagt aaaaaaaagc ctatgtcgca aggacgaatt caaactatac 961 gctgcaaata catcagtaat tgatacctac gggactttaa atctgacgtt tggccttaac 1021 ctacaacgca aatttagctg gcaattcgtc gtcgctaacg tccaatcagc aatcattgga 1081 gcggattttc ttacttatca tggtctgatc attgacctca agggtaaacg cctcattgat 1141 tctttaacgt ccacatcaac aaaaggagag ctgacggaaa caaaagtcta taacatttct 1201 acaatcaact cacacaactt cgccgaagta gatcagccat attccaatct acttggtctc 1261 ttttcggaca taacacgacc caataaaccc cctgcaaagc gcgtaagcaa tgacgtagca 1321 cattacattg agacaactgg cccccccgtt tttgacaagc caagacggct tacaggtgaa 1381 aaacttaagg cggcacgtcg ggactttgac cttttaatac aacaaggagt aattcgtccc 1441 tcaagtagcc aatgggctag ccctattcat ttggtcccta agaaaaacaa tgagtggcgt 1501 acaacaggtg attatcgaaa acttaatgct tgcacagttc cagatcgcta tcctaccccc 1561 catggtgagg acattctaca gcgtttgcac ggttgcaccg ttttctccac gctcgacctg 1621 gtgcgtgctt accatcaaat tccagtcgcc atgggcgata tttcaaaaac ggcagtcacc 1681 actccatttg ggctgtttga atttgttggc atgccaccag gtttgcgaaa tgcagcacaa 1741 acctttcaaa ggcatatgga caatcttctc cgtggagtac cattcgtagg atgttatatc 1801 gacgacatca ttgttttctc caagacgcac gaggagcacc tgcaacatct tcaaacaatc 1861 ttcaaaatcc tacaggataa ccaccttcaa atcaacccac aaaaatgccg atttgctcag 1921 gcgcagattc cgctgacaga ttacctaaaa ggtgcaacca aaaacgacaa acgagagatt 1981 gcttggaccc ccgatgctga aagcgcattc cacacctgca agctgggaat atcgaaagca 2041 gtgagctcta cgtttctctc cccatcagcc cagctatccc taaaaacaga cgcctcggat 2101 acagcgattg gagccgccct cgagcaattg gatggcaatg tttggcgtcc gccaccacga 2161 tactcccaca tgggggccga cctcaatgag cagccttgga cagctgctca acccgtggta 2221 ccgaaattac aggctcggta g