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LOCUS XM_070219045 4491 bp mRNA linear INV 09-DEC-2024 (LOC123003496), mRNA. ACCESSION XM_070219045 VERSION XM_070219045.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; includes ab initio. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..4491 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4491 /gene="LOC123003496" /note="uncharacterized LOC123003496; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:123003496" CDS 1..4491 /gene="LOC123003496" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_070075146.1" /db_xref="GeneID:123003496" /translation="MSNEIAVAALARFITVSDRMSHFRATIETPGAAAPSVHTCKVRK EQVRSLWDKAEKEFEACLDTISSLTTDEASDILATLHRKYEYCYSVYEELSVQLSELI DRASSQQPLSSTDNQSAYIPSGCRLPPCDTEVFEGDYLKWPTFRDLFTAVYVNNTRLM FLWDEMNAFLSDRYRTLEAIEDMKQSLGGPSTSKNSQVTKKLNSFEAKVSVKPKSCDL CSKETHPVRLCPRFIQMAVEARENYIKKKQLCLNCFARGHQLRDCSSTHSCFVCRGRH HTLLHRGNPFSNNPSSSGHARPRSDPPSGGSDIPDEHSNVQVCFASGSKAVLLGTAMI DICHLGTHFRARALIDSGSEATFITERLFKLVNLPFRPIQAKVSGLNQTVSAQSTRLC HFAIRSPTKPGLQLDTAAYVLPELAGRLPSHSIPQDILRDLPNLQWADPTFLQSSQID VLIGADILPSVLLSGTKTNICGSLFGQETIFGWVLTGPVSMSTSNRVSAFTTQITKTS EASLDKLLTKFWEVEDLPSKMVKESDSVCESHMREVSPTHNSPNYYLPHHAVIKPEST TTKLRVVFNASSPSANGTSLNDVLHAGPVLQSDLTIQILKWRYFKYVFSADITKMYRQ IWVDPKHTPFQRILFRNKEGDIRDYELKTVTFGVNCAPYLAIRVLKQLADDVVQQFPK ASHIIRNFMYVDDVLAGSNSQQEAQLAIQELVTALNSAGFPLRKWTSNHKGVLKDIPN EHLLHSEFLNIDAESTAKTLGIRWRATTDEFYFVPPEISVKSSYTKREVLSQIAKLFD PAGWLAPFIVRAKTFMQEIWLQELGWDDNLPDEMSHRWQVFLQSYSDLDQIRIPRWVG YQPQVKIELHGFCDASQKAYGAALYVRVEVGQQILTNLARVAPVKTVSLPRLELCGAL LLADMASTILPNMLSKSSAIFCWTDSTIVLAWLKKPACSWTTFVANRVTKIAQATKIE NWSHVRSEHNPADLASRGVSLQELGDSNLWWHGPQWFQLPKLQWPETSDPHPVTELEQ RAVKVHFVKLPADDFLDRFSRLDKALRVLAYVQRFLNRCRKAPVSPDKQLSNREIREA ERTYIILAQREEYALELRLLRSKRSIPASSPIANLFPFIDQQGLLRACGRLTASKVLQ YDERHPVLLPYSCRLSRLLVQFTHQITLHGGNQLIVRLMRSKYWIPKVKNLVKGVVNS CNMCTIYKKRLQTQLMGDFPTDRASFSRPFTYTGVDYAGKTIQGARRGCPQRVHSDNG KTFVGASSLISRDFTQALKESVTNAYSHQGLVWRFIPPGAPHMGGLWEAGVKSFKTLF NKSTSARKYTFEELSTLLAKIEACLNSRPLSPMSEDPTDLLALTPGHFLIGGPLLSTA EPAIKGEAQSIINRWQHLKAQHQQFSSRWKEEYLKELHKRNKWLSPSRNLQVDDMVVI KDDNLPSNDWRLGRIVAAIPGADTRVRVVDILTSRGTIQRPVHKLVLLPMEDKAISAL PQ" misc_feature 547..>834 /gene="LOC123003496" /note="Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: AIR1; COG5082" /db_xref="CDD:227414" misc_feature 1018..1458 /gene="LOC123003496" /note="Cellular and retroviral pepsin-like aspartate proteases; Region: pepsin_retropepsin_like; cl11403" /db_xref="CDD:472175" misc_feature order(1048..1050,1054..1056,1060..1062,1129..1137) /gene="LOC123003496" /note="inhibitor binding site [active]" /db_xref="CDD:133136" misc_feature 1048..1056 /gene="LOC123003496" /note="catalytic motif [active]" /db_xref="CDD:133136" misc_feature 1048..1050 /gene="LOC123003496" /note="Catalytic residue [active]" /db_xref="CDD:133136" misc_feature order(1129..1140,1150..1161) /gene="LOC123003496" /note="Active site flap [active]" /db_xref="CDD:133136" misc_feature 1654..2307 /gene="LOC123003496" /note="Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by...; Region: RT_pepA17; cd01644" /db_xref="CDD:238822" misc_feature order(1849..1866,1966..1971,2074..2076,2080..2085, 2278..2283) /gene="LOC123003496" /note="putative active site [active]" /db_xref="CDD:238822" misc_feature order(1849..1866,1966..1968,2080..2082) /gene="LOC123003496" /note="putative NTP binding site [chemical binding]; other site" /db_xref="CDD:238822" misc_feature 1969..1971 /gene="LOC123003496" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:238822" misc_feature 2353..2820 /gene="LOC123003496" /note="Pao retrotransposon peptidase; Region: Peptidase_A17; pfam05380" /db_xref="CDD:461634" misc_feature 3481..3642 /gene="LOC123003496" /note="Integrase zinc binding domain; Region: Integrase_H2C2; pfam17921" /db_xref="CDD:465569" misc_feature <3745..3909 /gene="LOC123003496" /note="Integrase core domain; Region: rve; pfam00665" /db_xref="CDD:459897" misc_feature 4171..4452 /gene="LOC123003496" /note="Family of unknown function (DUF5641); Region: DUF5641; pfam18701" /db_xref="CDD:465838" ORIGIN 1 atgagtaacg aaattgcagt tgcagccctc gcgcggttta tcacggtgtc cgaccgtatg 61 agccatttca gagcgactat agaaactcca ggagctgccg ctccgtccgt ccacacctgc 121 aaagtccgaa aagaacaagt ccgttcactc tgggacaaag ccgagaagga atttgaagct 181 tgtctagaca cgatttccag ccttacgact gacgaggcgt cggatatttt ggcgactcta 241 cacagaaaat atgaatattg ctattcggtg tacgaggagc tatcggttca gctcagcgag 301 ttaattgacc gagccagttc acagcagccg ttgtcgagca ccgacaatca gtccgcgtac 361 attccgtctg ggtgccggtt gcctccatgt gatacagaag tatttgaggg agactatctc 421 aaatggccaa cattcaggga ccttttcact gccgtctacg tcaacaacac acgtctgatg 481 ttcctatggg atgagatgaa cgcgttcctt agcgataggt atagaacctt agaagccatt 541 gaggacatga agcagagtct tggtggtccg tcaacttcca aaaattccca agttacgaag 601 aagcttaact cctttgaagc caaagtgagt gtcaaaccaa agagttgcga tttgtgctct 661 aaggagactc acccagtgcg gttgtgccct cgcttcattc agatggcagt agaggcgcgg 721 gaaaactaca taaaaaagaa gcagttatgc ttgaattgct tcgcgagagg ccatcagctc 781 cgggattgtt ccagtacgca cagctgcttt gtatgccgag ggagacatca cacgcttttg 841 catcgaggca acccattttc caacaatcca agttcctctg gacatgcgag acctagatcc 901 gatcctccgt cgggaggctc agacattccg gatgaacact caaatgtaca agtctgtttt 961 gcctcgggct caaaggcagt tctgttgggc acggcaatga ttgatatttg ccacctcggc 1021 acccacttcc gagcacgcgc tttgatcgac tcgggatctg aagcgacgtt cataacggag 1081 cgtcttttca agttggtcaa tctgccgttc cgccccattc aagctaaagt gtctggttta 1141 aatcagaccg tttctgccca gtcaacaagg ctttgccatt tcgccattcg ttctcctact 1201 aagccgggcc tgcagttaga caccgcagcg tatgttctgc cagaactagc aggcagatta 1261 ccctcacatt ccattccaca agatatcctg agagatttgc caaaccttca atgggcagat 1321 cccacatttc tccagagttc ccagatagac gttcttatcg gagctgatat tcttccatcc 1381 gtgctgctga gtggcacaaa gaccaacatc tgcggatctc tttttgggca agagaccatc 1441 ttcgggtggg tgctcactgg tccagtgtcc atgtccacga gcaaccgagt ctcagccttt 1501 acgactcaaa ttacaaaaac aagtgaggca tccttagaca aacttcttac gaagttttgg 1561 gaggtggaag atctaccatc aaaaatggta aaagagtccg attccgtctg cgaaagccat 1621 atgagagagg tttcgcccac tcacaattct ccaaactact acctcccaca ccatgcggtt 1681 ataaaacccg aaagcacgac cacgaaactc cgggtggtat tcaacgcttc cagcccgtca 1741 gcaaatggga ctagcttgaa cgatgtgctt catgccggtc cagtcctcca atctgactta 1801 acaattcaga ttttaaagtg gcgctatttc aagtatgttt ttagtgcaga catcacgaaa 1861 atgtataggc agatctgggt cgatccaaag cacacgccct ttcaaaggat tcttttccga 1921 aacaaggaag gtgacattcg agattacgag ctgaaaaccg taacattcgg tgtcaattgc 1981 gcgccctatc tcgccatccg agtgctgaaa cagctggctg atgacgtcgt tcagcagttt 2041 ccaaaagcca gtcatataat ccgcaacttc atgtatgttg atgacgtttt agcaggatcg 2101 aattctcaac aagaagctca acttgccatc caggagttag taaccgcttt gaattcggcc 2161 ggttttccgc ttagaaagtg gacttccaac cacaaggggg ttttaaagga catcccaaat 2221 gagcatcttc tccattctga gttcctaaat attgatgccg aaagcacagc caaaaccctc 2281 ggcattcgtt ggagagcaac caccgacgag ttctacttcg tgcccccaga aatatccgtc 2341 aagtcctcct atactaaaag agaagttctc tcccagatcg caaagctatt cgatcccgct 2401 ggatggcttg caccgttcat cgtccgggcc aaaactttta tgcaggagat ctggctgcaa 2461 gagttaggct gggatgacaa ccttcccgac gaaatgagcc atagatggca agtgttcctg 2521 caaagttatt ccgacctcga tcaaatccgt attccgagat gggtcggtta ccagccccag 2581 gtaaaaatcg agcttcacgg gttctgtgac gcttcccaaa aagcctatgg ggcggcgctg 2641 tatgtcaggg ttgaagtcgg tcagcagata ttgactaatc tggcccgggt tgcccctgtg 2701 aaaactgtat ctctcccccg actcgagcta tgtggtgccc tattgctggc agatatggca 2761 tctaccatcc ttccaaatat gctgtcaaaa agctctgcga ttttctgctg gacagattct 2821 accattgtcc tggcatggtt aaagaaacca gcctgctcct ggaccacatt cgtagccaac 2881 cgcgtaacca aaatagctca agctacaaag attgagaatt ggtcacatgt gcggtcagaa 2941 cacaatcctg ccgacctagc tagtcgcggc gtgtccctgc aagagctggg cgatagcaac 3001 ctctggtggc atgggcccca gtggtttcaa ttgcccaaac ttcaatggcc agaaacttcg 3061 gatccacacc cagtcacgga attagagcag cgcgcggtga aggttcattt cgtaaagctc 3121 cccgctgatg atttccttga ccgtttttcc agactagaca aggctttacg agtcctagct 3181 tacgtccaaa ggttcctaaa tcgctgtcgt aaggctccgg taagtccgga taagcagctc 3241 agtaatcggg agatccggga ggctgagagg acctacataa tacttgccca gcgtgaagag 3301 tacgcgctcg agcttcgatt gttacgaagc aaaagatcca tacccgcatc aagcccaatt 3361 gctaatttgt ttccatttat agaccaacag ggactcttaa gagcatgtgg ccgcttaact 3421 gcctccaagg tcctgcagta tgacgagcgc catcctgtat tactcccgta cagctgtcgg 3481 ttatctcgtc ttcttgtcca attcacgcac cagattacgc ttcatggcgg caaccaattg 3541 atagtgcgcc tgatgcgatc caaatattgg attcctaaag tcaagaatct ggtaaagggc 3601 gtggtgaatt catgcaatat gtgcaccatt tataagaaaa gactgcaaac ccaattgatg 3661 ggcgattttc cgactgatcg agcctctttt tccaggccat ttacttacac cggcgtcgat 3721 tacgccggta aaactataca gggagctaga agaggttgtc ctcagcgggt ccattccgac 3781 aacggcaaaa cctttgttgg cgcctcaagt cttatttccc gtgactttac gcaagcacta 3841 aaggagtcag tgaccaatgc gtatagccat cagggactcg tgtggcgttt cataccccca 3901 ggagctcctc atatgggagg cctgtgggag gcaggagtaa agagttttaa aacgctgttt 3961 aacaaatcca cgtccgctcg caagtataca ttcgaagagc tttccacgct tctggcaaag 4021 attgaagcct gccttaattc cagaccactc tctccaatgt cagaggaccc gacagacttg 4081 ctggcactga cgccaggcca ttttctgatc gggggaccgt tgctttccac ggcggagcct 4141 gcaattaaag gcgaagccca gtcaatcata aatcgatggc aacatctcaa ggcccagcat 4201 caacaattta gttcgcgatg gaaagaagag tatctaaagg aactccacaa gcgcaacaag 4261 tggttgagtc catccagaaa tctgcaagtc gacgatatgg tagtcatcaa ggacgataat 4321 ttgccatcaa atgactggcg gctcggcagg atcgtagctg ctatcccagg agctgatact 4381 agagtacgcg tcgtagatat tcttacttct cgtggaacca tccaacgtcc ggtccacaaa 4441 ctagtacttc ttcctatgga agacaaggca atctccgcac ttccgcaata a