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LOCUS XM_070219037 3110 bp mRNA linear INV 09-DEC-2024 variant X4, mRNA. ACCESSION XM_070219037 VERSION XM_070219037.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3110 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3110 /gene="otu" /note="ovarian tumor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:123002485" CDS 165..2633 /gene="otu" /codon_start=1 /product="deubiquitinase otu isoform X2" /protein_id="XP_070075138.1" /db_xref="GeneID:123002485" /translation="MDMQVQRPITSGSRQAPDPYDQYLESRGLYRKHTARDASSLFRV IAEQMYDTQMLHYEIRLECVRFMTLKRRIFEKDIPGDFDSYMQDMSKPKTYGTMTELR AMSCLYRRNVILYEPYNMGTSVIFNRRYPENFRLFFNNENHFDSVYKVNYIESAAICQ SIAFKLLYQQLFKLPDVSFAVEIMLHPHSFNWEKFDVQFDDRGYMVRIQCSDGRVFAL DLPENTNCILENYMLCNFHSTCGNQSIISRKAARRELKNQDDRKQAVSNGHESSEQMP MCPNRLESCVRQLLDDGITPFPYKVAKSMDPYMYRNIEFDCWNDMRKEAKRYNVYVND YNFKVPYESLHPLPPEEYRPWALPFRYQRHMNRMPLPKFTGKTNKTSSKWKKNKVFEM GQYFEPGKCDLMPMQGYIPVENCYQEMHHHQEELQQRDQRDPDQSDHNPVAEQRDREE PQKQQQLQRSKGSRVQRQNSNSSQIPESPVSTVPPPTQYMNYVPLLAGRPGQVPPPWP SSPLALTEEFQFPMSGQPHPPPAESCVYMPFGGYGPPPPGALALPGPHPFMPLPPPPL NAPGVGEPRRSLHLNGEDLPMDMVTLRYFYNMGVDMHWRMAHHPPPEELSLIGYSHQN NTDQQSPGRNSGGEEHLAAEATPPPSPEVENGTVQQSPLEKAGGYSKRNLTPAKGRGK RPEHLQDLKDPLGPAAFLPTPTPSPSSNGSQFSFYTSTPPPHHLMSPPRLLQPPPPPP PIFFHKAGPPQLPGTAPGQNPYAWGMATPVVAPYEVINNYNMESAAQSPQQHQQQQQT SPLPPTPVPVQSQPAAVYAAPRHH" misc_feature 225..608 /gene="otu" /note="OTU (ovarian tumor) domain of bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 and similar proteins; Region: OTU_ALG13-like; cd22753" /db_xref="CDD:438590" misc_feature order(282..284,417..419,426..428,447..458,534..536, 540..542,576..578,588..596) /gene="otu" /note="putative polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:438590" misc_feature <1467..>1757 /gene="otu" /note="DNA translocase FtsK; Provisional; Region: PRK10263" /db_xref="CDD:236669" polyA_site 3110 /gene="otu" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgttggcatt caaattcgcg gttctggaag ctaagatcat tggcatttgc ctcatttctt 61 cgagtaacgg tgctaggtgc ggttgccaca gtattattta tatttctata ttgcctataa 121 aaagtgatcg tgataaatag gaaagcagta acgaaggagt cgccatggac atgcaagtgc 181 agcgccccat aacatccggc agcagacagg ccccggatcc gtacgaccag tacttggaga 241 gccgcggact ctaccggaag catacggccc gggacgcatc cagtttgttc cgggtgatcg 301 ccgagcagat gtacgacacc cagatgctgc actacgaaat tcggctggag tgcgtacgct 361 tcatgaccct aaagcggcga atttttgaga aggacatccc cggtgatttt gacagctata 421 tgcaggacat gtctaagccc aagacctatg gaaccatgac agaacttcgc gctatgtcct 481 gcttgtatcg tcgcaatgta atcttgtacg agccctacaa catgggaacc agcgtcattt 541 tcaatcgacg ctatccggaa aacttccgtc tcttcttcaa caacgagaac cactttgatt 601 cggtgtacaa agtgaactat atagaatctg ctgccatttg ccagtcgatc gccttcaagt 661 tgctatacca gcagctcttc aagctgcccg atgtatcgtt tgctgtggag atcatgttgc 721 atccgcattc tttcaattgg gaaaagttcg acgtgcagtt cgatgacagg ggctatatgg 781 ttcgcattca gtgctccgat ggtcgagtct tcgcccttga tctgcccgag aacaccaact 841 gcatattgga gaactatatg ctgtgcaatt ttcacagcac ctgtggaaat cagagcatta 901 ttagtcgaaa ggcggcacgg cgggagttaa aaaaccagga cgatcgaaag caggctgtca 961 gtaatgggca cgaatcaagc gaacagatgc ccatgtgtcc caaccgactg gaatcctgtg 1021 tgcgccagct tctggatgat ggcatcacac cgtttccgta caaggtggcc aaatccatgg 1081 acccctacat gtatcggaat atcgaattcg attgctggaa cgatatgcgc aaggaggcca 1141 agcgctataa tgtctacgtc aatgactata actttaaggt tccctacgag tcgctgcatc 1201 ccctgccccc agaagagtac cgtccatggg cgctgccctt ccgctatcag cgccacatga 1261 atcgcatgcc gttgcccaag tttaccggca aaacaaacaa gacctcttcc aagtggaaga 1321 agaacaaggt gttcgaaatg ggccagtact ttgagcccgg caaatgtgac ttgatgccga 1381 tgcagggcta catcccagtg gagaattgct atcaggagat gcaccaccac caggaagaac 1441 tgcagcagcg cgatcaaaga gatcccgatc agagtgacca caatccggtg gcggagcagc 1501 gtgatcgtga ggagccgcag aagcagcagc aactgcagcg ctccaaggga tcgagggttc 1561 agcggcagaa ctcgaattcc agccaaatcc cagagtctcc ggtttcgact gttccaccac 1621 cgactcagta catgaactat gtgcccctgt tggcgggtcg tcctggccag gttccgccgc 1681 cttggccctc gtctccgctg gcgctcaccg aggagttcca gtttcccatg tccggacaac 1741 cgcatccgcc gccagccgag agctgtgtct atatgccctt cggtggttat ggtccgccac 1801 caccgggagc cctcgctttg ccgggaccgc atccgttcat gccgctgcct ccgccgccgc 1861 tgaatgctcc cggagttgga gaaccacgtc gttcccttca cctgaacggt gaggacttgc 1921 caatggatat ggtcaccttg agatatttct acaatatggg cgtggatatg cattggcgca 1981 tggcccatca cccaccgcct gaggagctat cgttaattgg ctacagtcat cagaacaaca 2041 cggaccaaca gtcgccggga aggaactctg gcggagagga gcatttggcc gccgaggcca 2101 cgccaccgcc ttcgccagag gtggaaaatg gcacggtgca gcagtcgccg ctggagaagg 2161 ccggcggcta ctccaagcgc aatttgactc cggctaaggg acgcggtaaa cggccggagc 2221 atcttcaaga tctaaaggat ccgctagggc cggcggcctt cttacccacg cccacaccat 2281 cgcccagctc gaatggcagt cagtttagtt tctacacttc cacaccaccg cctcatcatc 2341 tgatgtcgcc gccgaggctg ctccaaccac cgccgccgcc gccgccgata ttcttccaca 2401 aggcgggacc acctcagtta ccgggaacag cacctggaca gaatccctat gcctggggca 2461 tggctactcc tgtggtggcc ccctacgagg tgatcaacaa ctacaacatg gagtcggcgg 2521 cacagtcacc acaacaacat cagcagcagc agcagacgtc gcccttgcca ccaactcccg 2581 tgcccgtcca atcccagcca gcagccgtct atgctgcacc gcgtcatcac taaaacgggg 2641 aaaaaaatca gatcagatca gatcacttcg aagagagagg ccattcccgt tcccgttccc 2701 attcgcattg agtgcattcc aatccaacca atgactttta aaatttaaac tcatttttaa 2761 atttgtagtc aactttttat aggccacctg ctcgatggcg cttttcaatt accgttcagc 2821 ttctgtacaa caatcgattg cataatttaa cgcaaatgtc aacacaactt cattttaaac 2881 ttgtaactta acgtaatttt atgcgatttt ttttaaagtt aacaaaggta gccggcaaga 2941 aaacaaagaa ccacctattt atatgattta tttaaaaccc ttccaaacta acactatata 3001 atcttatata tttatgtact cgctgatcgg ctagagactc acctatgtaa agtgtaccag 3061 aaaattaacc ataaataaaa caagattcga gtataacgca caagacaata