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LOCUS XM_070219036 3219 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_070219036 VERSION XM_070219036.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3219 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3219 /gene="otu" /note="ovarian tumor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:123002485" CDS 148..2742 /gene="otu" /codon_start=1 /product="deubiquitinase otu isoform X1" /protein_id="XP_070075137.1" /db_xref="GeneID:123002485" /translation="MDMQVQRPITSGSRQAPDPYDQYLESRGLYRKHTARDASSLFRV IAEQMYDTQMLHYEIRLECVRFMTLKRRIFEKDIPGDFDSYMQDMSKPKTYGTMTELR AMSCLYRRNVILYEPYNMGTSVIFNRRYPENFRLFFNNENHFDSVYKVNYIESAAICQ SIAFKLLYQQLFKLPDVSFAVEIMLHPHSFNWEKFDVQFDDRGYMVRIQCSDGRVFAL DLPENTNCILENYMLCNFHSTCGNQSIISRKAARRELKNQDDRKQAVSNGHESSEQMP MCPNRLESCVRQLLDDGITPFPYKVAKSMDPYMYRNIEFDCWNDMRKEAKRYNVYVND YNFKVGAKCKVESEHDSEMYTCHIQSISKDKTYCVVFVEAIGKKLGVPYESLHPLPPE EYRPWALPFRYQRHMNRMPLPKFTGKTNKTSSKWKKNKVFEMGQYFEPGKCDLMPMQG YIPVENCYQEMHHHQEELQQRDQRDPDQSDHNPVAEQRDREEPQKQQQLQRSKGSRVQ RQNSNSSQIPESPVSTVPPPTQYMNYVPLLAGRPGQVPPPWPSSPLALTEEFQFPMSG QPHPPPAESCVYMPFGGYGPPPPGALALPGPHPFMPLPPPPLNAPGVGEPRRSLHLNG EDLPMDMVTLRYFYNMGVDMHWRMAHHPPPEELSLIGYSHQNNTDQQSPGRNSGGEEH LAAEATPPPSPEVENGTVQQSPLEKAGGYSKRNLTPAKGRGKRPEHLQDLKDPLGPAA FLPTPTPSPSSNGSQFSFYTSTPPPHHLMSPPRLLQPPPPPPPIFFHKAGPPQLPGTA PGQNPYAWGMATPVVAPYEVINNYNMESAAQSPQQHQQQQQTSPLPPTPVPVQSQPAA VYAAPRHH" misc_feature 208..591 /gene="otu" /note="OTU (ovarian tumor) domain of bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 and similar proteins; Region: OTU_ALG13-like; cd22753" /db_xref="CDD:438590" misc_feature order(265..267,400..402,409..411,430..441,517..519, 523..525,559..561,571..579) /gene="otu" /note="putative polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:438590" misc_feature 1153..1314 /gene="otu" /note="Tudor domain found in Tudor domain-containing protein 13 (TDRD13) and similar proteins; Region: Tudor_TDRD13-like; cd20380" /db_xref="CDD:410451" misc_feature order(1186..1188,1201..1203,1207..1209,1261..1263, 1270..1272,1276..1278) /gene="otu" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:410451" misc_feature <1576..>1866 /gene="otu" /note="DNA translocase FtsK; Provisional; Region: PRK10263" /db_xref="CDD:236669" polyA_site 3219 /gene="otu" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cactaatggt ctattccctt tcgctgcatc cttccaaccg ctggaagctt ctcgctcttt 61 ctgttggcat tcaaattcgc ggttctggaa gctaagatca ttggcatttg cctcatttct 121 tcgagtaacg gtgctagagg agtcgccatg gacatgcaag tgcagcgccc cataacatcc 181 ggcagcagac aggccccgga tccgtacgac cagtacttgg agagccgcgg actctaccgg 241 aagcatacgg cccgggacgc atccagtttg ttccgggtga tcgccgagca gatgtacgac 301 acccagatgc tgcactacga aattcggctg gagtgcgtac gcttcatgac cctaaagcgg 361 cgaatttttg agaaggacat ccccggtgat tttgacagct atatgcagga catgtctaag 421 cccaagacct atggaaccat gacagaactt cgcgctatgt cctgcttgta tcgtcgcaat 481 gtaatcttgt acgagcccta caacatggga accagcgtca ttttcaatcg acgctatccg 541 gaaaacttcc gtctcttctt caacaacgag aaccactttg attcggtgta caaagtgaac 601 tatatagaat ctgctgccat ttgccagtcg atcgccttca agttgctata ccagcagctc 661 ttcaagctgc ccgatgtatc gtttgctgtg gagatcatgt tgcatccgca ttctttcaat 721 tgggaaaagt tcgacgtgca gttcgatgac aggggctata tggttcgcat tcagtgctcc 781 gatggtcgag tcttcgccct tgatctgccc gagaacacca actgcatatt ggagaactat 841 atgctgtgca attttcacag cacctgtgga aatcagagca ttattagtcg aaaggcggca 901 cggcgggagt taaaaaacca ggacgatcga aagcaggctg tcagtaatgg gcacgaatca 961 agcgaacaga tgcccatgtg tcccaaccga ctggaatcct gtgtgcgcca gcttctggat 1021 gatggcatca caccgtttcc gtacaaggtg gccaaatcca tggaccccta catgtatcgg 1081 aatatcgaat tcgattgctg gaacgatatg cgcaaggagg ccaagcgcta taatgtctac 1141 gtcaatgact ataactttaa ggtaggcgcc aagtgcaagg tggaatcgga gcacgactcg 1201 gagatgtaca cgtgccacat ccaaagcatc tccaaagaca agacctactg cgtcgtcttt 1261 gtggaggcga ttggcaagaa gctaggggtt ccctacgagt cgctgcatcc cctgccccca 1321 gaagagtacc gtccatgggc gctgcccttc cgctatcagc gccacatgaa tcgcatgccg 1381 ttgcccaagt ttaccggcaa aacaaacaag acctcttcca agtggaagaa gaacaaggtg 1441 ttcgaaatgg gccagtactt tgagcccggc aaatgtgact tgatgccgat gcagggctac 1501 atcccagtgg agaattgcta tcaggagatg caccaccacc aggaagaact gcagcagcgc 1561 gatcaaagag atcccgatca gagtgaccac aatccggtgg cggagcagcg tgatcgtgag 1621 gagccgcaga agcagcagca actgcagcgc tccaagggat cgagggttca gcggcagaac 1681 tcgaattcca gccaaatccc agagtctccg gtttcgactg ttccaccacc gactcagtac 1741 atgaactatg tgcccctgtt ggcgggtcgt cctggccagg ttccgccgcc ttggccctcg 1801 tctccgctgg cgctcaccga ggagttccag tttcccatgt ccggacaacc gcatccgccg 1861 ccagccgaga gctgtgtcta tatgcccttc ggtggttatg gtccgccacc accgggagcc 1921 ctcgctttgc cgggaccgca tccgttcatg ccgctgcctc cgccgccgct gaatgctccc 1981 ggagttggag aaccacgtcg ttcccttcac ctgaacggtg aggacttgcc aatggatatg 2041 gtcaccttga gatatttcta caatatgggc gtggatatgc attggcgcat ggcccatcac 2101 ccaccgcctg aggagctatc gttaattggc tacagtcatc agaacaacac ggaccaacag 2161 tcgccgggaa ggaactctgg cggagaggag catttggccg ccgaggccac gccaccgcct 2221 tcgccagagg tggaaaatgg cacggtgcag cagtcgccgc tggagaaggc cggcggctac 2281 tccaagcgca atttgactcc ggctaaggga cgcggtaaac ggccggagca tcttcaagat 2341 ctaaaggatc cgctagggcc ggcggccttc ttacccacgc ccacaccatc gcccagctcg 2401 aatggcagtc agtttagttt ctacacttcc acaccaccgc ctcatcatct gatgtcgccg 2461 ccgaggctgc tccaaccacc gccgccgccg ccgccgatat tcttccacaa ggcgggacca 2521 cctcagttac cgggaacagc acctggacag aatccctatg cctggggcat ggctactcct 2581 gtggtggccc cctacgaggt gatcaacaac tacaacatgg agtcggcggc acagtcacca 2641 caacaacatc agcagcagca gcagacgtcg cccttgccac caactcccgt gcccgtccaa 2701 tcccagccag cagccgtcta tgctgcaccg cgtcatcact aaaacgggga aaaaaatcag 2761 atcagatcag atcacttcga agagagaggc cattcccgtt cccgttccca ttcgcattga 2821 gtgcattcca atccaaccaa tgacttttaa aatttaaact catttttaaa tttgtagtca 2881 actttttata ggccacctgc tcgatggcgc ttttcaatta ccgttcagct tctgtacaac 2941 aatcgattgc ataatttaac gcaaatgtca acacaacttc attttaaact tgtaacttaa 3001 cgtaatttta tgcgattttt tttaaagtta acaaaggtag ccggcaagaa aacaaagaac 3061 cacctattta tatgatttat ttaaaaccct tccaaactaa cactatataa tcttatatat 3121 ttatgtactc gctgatcggc tagagactca cctatgtaaa gtgtaccaga aaattaacca 3181 taaataaaac aagattcgag tataacgcac aagacaata