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LOCUS XM_070219035 3237 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_070219035 VERSION XM_070219035.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3237 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3237 /gene="otu" /note="ovarian tumor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:123002485" CDS 166..2760 /gene="otu" /codon_start=1 /product="deubiquitinase otu isoform X1" /protein_id="XP_070075136.1" /db_xref="GeneID:123002485" /translation="MDMQVQRPITSGSRQAPDPYDQYLESRGLYRKHTARDASSLFRV IAEQMYDTQMLHYEIRLECVRFMTLKRRIFEKDIPGDFDSYMQDMSKPKTYGTMTELR AMSCLYRRNVILYEPYNMGTSVIFNRRYPENFRLFFNNENHFDSVYKVNYIESAAICQ SIAFKLLYQQLFKLPDVSFAVEIMLHPHSFNWEKFDVQFDDRGYMVRIQCSDGRVFAL DLPENTNCILENYMLCNFHSTCGNQSIISRKAARRELKNQDDRKQAVSNGHESSEQMP MCPNRLESCVRQLLDDGITPFPYKVAKSMDPYMYRNIEFDCWNDMRKEAKRYNVYVND YNFKVGAKCKVESEHDSEMYTCHIQSISKDKTYCVVFVEAIGKKLGVPYESLHPLPPE EYRPWALPFRYQRHMNRMPLPKFTGKTNKTSSKWKKNKVFEMGQYFEPGKCDLMPMQG YIPVENCYQEMHHHQEELQQRDQRDPDQSDHNPVAEQRDREEPQKQQQLQRSKGSRVQ RQNSNSSQIPESPVSTVPPPTQYMNYVPLLAGRPGQVPPPWPSSPLALTEEFQFPMSG QPHPPPAESCVYMPFGGYGPPPPGALALPGPHPFMPLPPPPLNAPGVGEPRRSLHLNG EDLPMDMVTLRYFYNMGVDMHWRMAHHPPPEELSLIGYSHQNNTDQQSPGRNSGGEEH LAAEATPPPSPEVENGTVQQSPLEKAGGYSKRNLTPAKGRGKRPEHLQDLKDPLGPAA FLPTPTPSPSSNGSQFSFYTSTPPPHHLMSPPRLLQPPPPPPPIFFHKAGPPQLPGTA PGQNPYAWGMATPVVAPYEVINNYNMESAAQSPQQHQQQQQTSPLPPTPVPVQSQPAA VYAAPRHH" misc_feature 226..609 /gene="otu" /note="OTU (ovarian tumor) domain of bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 and similar proteins; Region: OTU_ALG13-like; cd22753" /db_xref="CDD:438590" misc_feature order(283..285,418..420,427..429,448..459,535..537, 541..543,577..579,589..597) /gene="otu" /note="putative polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:438590" misc_feature 1171..1332 /gene="otu" /note="Tudor domain found in Tudor domain-containing protein 13 (TDRD13) and similar proteins; Region: Tudor_TDRD13-like; cd20380" /db_xref="CDD:410451" misc_feature order(1204..1206,1219..1221,1225..1227,1279..1281, 1288..1290,1294..1296) /gene="otu" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:410451" misc_feature <1594..>1884 /gene="otu" /note="DNA translocase FtsK; Provisional; Region: PRK10263" /db_xref="CDD:236669" polyA_site 3237 /gene="otu" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgttggcat tcaaattcgc ggttctggaa gctaagatca ttggcatttg cctcatttct 61 tcgagtaacg gtgctaggtg cggttgccac agtattattt atatttctat attgcctata 121 aaaagtgatc gtgataaata ggaaagcagt aacgaaggag tcgccatgga catgcaagtg 181 cagcgcccca taacatccgg cagcagacag gccccggatc cgtacgacca gtacttggag 241 agccgcggac tctaccggaa gcatacggcc cgggacgcat ccagtttgtt ccgggtgatc 301 gccgagcaga tgtacgacac ccagatgctg cactacgaaa ttcggctgga gtgcgtacgc 361 ttcatgaccc taaagcggcg aatttttgag aaggacatcc ccggtgattt tgacagctat 421 atgcaggaca tgtctaagcc caagacctat ggaaccatga cagaacttcg cgctatgtcc 481 tgcttgtatc gtcgcaatgt aatcttgtac gagccctaca acatgggaac cagcgtcatt 541 ttcaatcgac gctatccgga aaacttccgt ctcttcttca acaacgagaa ccactttgat 601 tcggtgtaca aagtgaacta tatagaatct gctgccattt gccagtcgat cgccttcaag 661 ttgctatacc agcagctctt caagctgccc gatgtatcgt ttgctgtgga gatcatgttg 721 catccgcatt ctttcaattg ggaaaagttc gacgtgcagt tcgatgacag gggctatatg 781 gttcgcattc agtgctccga tggtcgagtc ttcgcccttg atctgcccga gaacaccaac 841 tgcatattgg agaactatat gctgtgcaat tttcacagca cctgtggaaa tcagagcatt 901 attagtcgaa aggcggcacg gcgggagtta aaaaaccagg acgatcgaaa gcaggctgtc 961 agtaatgggc acgaatcaag cgaacagatg cccatgtgtc ccaaccgact ggaatcctgt 1021 gtgcgccagc ttctggatga tggcatcaca ccgtttccgt acaaggtggc caaatccatg 1081 gacccctaca tgtatcggaa tatcgaattc gattgctgga acgatatgcg caaggaggcc 1141 aagcgctata atgtctacgt caatgactat aactttaagg taggcgccaa gtgcaaggtg 1201 gaatcggagc acgactcgga gatgtacacg tgccacatcc aaagcatctc caaagacaag 1261 acctactgcg tcgtctttgt ggaggcgatt ggcaagaagc taggggttcc ctacgagtcg 1321 ctgcatcccc tgcccccaga agagtaccgt ccatgggcgc tgcccttccg ctatcagcgc 1381 cacatgaatc gcatgccgtt gcccaagttt accggcaaaa caaacaagac ctcttccaag 1441 tggaagaaga acaaggtgtt cgaaatgggc cagtactttg agcccggcaa atgtgacttg 1501 atgccgatgc agggctacat cccagtggag aattgctatc aggagatgca ccaccaccag 1561 gaagaactgc agcagcgcga tcaaagagat cccgatcaga gtgaccacaa tccggtggcg 1621 gagcagcgtg atcgtgagga gccgcagaag cagcagcaac tgcagcgctc caagggatcg 1681 agggttcagc ggcagaactc gaattccagc caaatcccag agtctccggt ttcgactgtt 1741 ccaccaccga ctcagtacat gaactatgtg cccctgttgg cgggtcgtcc tggccaggtt 1801 ccgccgcctt ggccctcgtc tccgctggcg ctcaccgagg agttccagtt tcccatgtcc 1861 ggacaaccgc atccgccgcc agccgagagc tgtgtctata tgcccttcgg tggttatggt 1921 ccgccaccac cgggagccct cgctttgccg ggaccgcatc cgttcatgcc gctgcctccg 1981 ccgccgctga atgctcccgg agttggagaa ccacgtcgtt cccttcacct gaacggtgag 2041 gacttgccaa tggatatggt caccttgaga tatttctaca atatgggcgt ggatatgcat 2101 tggcgcatgg cccatcaccc accgcctgag gagctatcgt taattggcta cagtcatcag 2161 aacaacacgg accaacagtc gccgggaagg aactctggcg gagaggagca tttggccgcc 2221 gaggccacgc caccgccttc gccagaggtg gaaaatggca cggtgcagca gtcgccgctg 2281 gagaaggccg gcggctactc caagcgcaat ttgactccgg ctaagggacg cggtaaacgg 2341 ccggagcatc ttcaagatct aaaggatccg ctagggccgg cggccttctt acccacgccc 2401 acaccatcgc ccagctcgaa tggcagtcag tttagtttct acacttccac accaccgcct 2461 catcatctga tgtcgccgcc gaggctgctc caaccaccgc cgccgccgcc gccgatattc 2521 ttccacaagg cgggaccacc tcagttaccg ggaacagcac ctggacagaa tccctatgcc 2581 tggggcatgg ctactcctgt ggtggccccc tacgaggtga tcaacaacta caacatggag 2641 tcggcggcac agtcaccaca acaacatcag cagcagcagc agacgtcgcc cttgccacca 2701 actcccgtgc ccgtccaatc ccagccagca gccgtctatg ctgcaccgcg tcatcactaa 2761 aacggggaaa aaaatcagat cagatcagat cacttcgaag agagaggcca ttcccgttcc 2821 cgttcccatt cgcattgagt gcattccaat ccaaccaatg acttttaaaa tttaaactca 2881 tttttaaatt tgtagtcaac tttttatagg ccacctgctc gatggcgctt ttcaattacc 2941 gttcagcttc tgtacaacaa tcgattgcat aatttaacgc aaatgtcaac acaacttcat 3001 tttaaacttg taacttaacg taattttatg cgattttttt taaagttaac aaaggtagcc 3061 ggcaagaaaa caaagaacca cctatttata tgatttattt aaaacccttc caaactaaca 3121 ctatataatc ttatatattt atgtactcgc tgatcggcta gagactcacc tatgtaaagt 3181 gtaccagaaa attaaccata aataaaacaa gattcgagta taacgcacaa gacaata