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LOCUS XM_070219028 8996 bp mRNA linear INV 09-DEC-2024 19D (RhoGAP19D), transcript variant X5, mRNA. ACCESSION XM_070219028 VERSION XM_070219028.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8996 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8996 /gene="RhoGAP19D" /note="Rho GTPase activating protein at 19D; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108068035" CDS 893..7303 /gene="RhoGAP19D" /codon_start=1 /product="rho GTPase-activating protein 21-A isoform X3" /protein_id="XP_070075129.1" /db_xref="GeneID:108068035" /translation="MLQNSNAAAAAQAASAASAVAAAAANNAALAASSIQPKLIVIRR RPNQGFGFTLRHFIAYPPEDDQSSATAASASVSVSGNWPQEASSMAGSSSGSSSSVAV AGITGLEPTSPTSLPPYQVKAMETIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGI AYSTIVSMIKQTPSVLTLHVVPKECDVLQMHYTSIAHTPESNRLTMSTHSPSLLANGS HKTTFPAATAAAVPAPPQQQQQQQLISYPAVAAVTTSSPAGSPHSQSHPNSHHAPSLH GGSRSGSITSTASGGITILSHQFYPQQQQQQQQQQQHRHPALTGGSSSIDFGDMAHGL RQHQQQQQQQQQQHLYQQQQHHHQFMRANQPPNLTVLSASSATNTPTPTPTARQPKSA TVLSQALYAGVGVGAGPSSAGGSGSGSGSLSGGSENSDLMIRLRESIKQKEEFLKSPV PASLSSSNSASSSTNGNQAPQSSSSPAQQQQQQQHFFPSHTPPSGVGVQVMVPPPRSR HQVMLKQQQQQQQHHVLGYDMYYSGGKLVQRSSTAPGSVSHHQQQQIHHHQQIQQQQQ QQHRNQVMINNNAKYAKDLDYFETLQETGVTNKVFERKLVSHMSKGFDPFKPLSINTS AMESSASTSSSSTVTSTVKKQSVLYESLQQHPLAKYHQTQHQHQTATTTVDGQTSSRM ELHKATLANATIDPMPPSLPPVAPSSKFVDKPPAGSSSVATLADIAESSAAAIVDCAV VGSGNVVRRYKPLSSSSFDEGKPMRRISYLRATNNEADFNAAEAAAVAAAGGGGGDAA APPAASSSAPAPTPAPSAPAPLPISIPIPVAAVVEPQKTKSLVEEHPDPTYDVIGGTG GGHEFIETPNGLEDVRLSAHGSRRASMSSDMRSSIHIDAELNGKYVPNELEAFETEIE IKSSCINGKRMSEYRSWRQVKLEIKGDLLRIYSGRHAKSEHNVIELDIRNFKFFDESL DKKKYLIRMQSKPSPSGAHLATLGNELNLDEASAAGNHDKLLTSSGSSGVNEATQQQQ QAATNSSSALTASTSSSTCSSGGPYTEILFKTKSSNEMKRLFGLLQWKDSLNYDDNEH QQQGKQLAEPQKTAASASYLDDVQGGGGTAAAGAADSSPLSSHSGGITDHHHVSALPA AAAIVAATSDSISPVMKARKSSSHKHIPDKDLGSPKSKNWKDLLFRRGGSGSGTSGGV SHHDLASPSSCAAKQIGSIGVPLRSCPMSKVNACVPHLVEVCTNIVETKGLGVVGIYR IPGNKAAISELSELVNTKDFQFESCASDDRWEDVNVVSSLLKLFIRSLPDALMPASYY INFIEADKKFGLERIVLLREIVESLPRHPYETMKHLIRHLCRVSGNCEVNRMEPKNLA IIFGPSIIRTPNDTLETAVKDMKHQCRIVELLVTQYDYFFEGGSLPDLAEVSGGTAAV NAAQPQQQTQEDQTSMLLHNLSKIERITERETTRTSRFMPQLRRKTHGKRSAVNSDTY SGESVLSLDYAKVSTSASASASSTASTSSSCKVASASASASSSSSSTTKFSSSSSSAS STTAVAVSSSISSTSSKLLSANFKKRSTGGFLGSRSSHQTTRKASLDEKDSGQSSGSL GHSLGVGLNLAKEQQRSSVDISILLTDDDSSSRLSDTGSMSLTTITDTLDSKLRNLRS GSESNDENGSPEFPKNRRHTLGQPLHLHSENIPYADESPERLFHQFCNPLDAPPLSLH LSRSCTATNTIGDEKPSKQSGSVAPLPPSLLKAAHKLQHSATVPIHQGSSTAPTSGAA TPVGTPTGSSGVVVVGAIPSRSSSSSVTTLTKSIHPRFSNYLSYERSSAAAAGGGTST GSAGGAASEDDSEGSTTSDPKEKLLLGERPSPSFFLERYNKKRRDHRLFRSASFNCRN YSTRHMTSTQPAGVASGVAVVVGAACCQALSAATGLTKDEKTDMNLTKKRQIQNKQNR SIKRRHTVGGPHDYSASNGSCSNHAHGHDLAAINYNHHNRHHQQQLLKLGSASSAGGG SVAAAAETTTTTTTTTTVLRRLGGTAATGQAGGEASVALPGSSSGSSSNNNNSPQSDG SNGNGGAAGVPSSVQPTGVTNSSGSNSGSSSNSSSNSTTPAGNGDQVLEVGIRIKNIN RGRF" misc_feature 1001..1432 /gene="RhoGAP19D" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature order(1037..1057,1280..1282,1289..1291,1376..1378, 1388..1390,1397..1402) /gene="RhoGAP19D" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467153" misc_feature 4556..5146 /gene="RhoGAP19D" /note="GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to...; Region: RhoGAP; cl02570" /db_xref="CDD:470621" misc_feature order(4676..4678,4802..4804,4814..4816,5018..5020, 5027..5032,5102..5104) /gene="RhoGAP19D" /note="GTPase interaction site; other site" /db_xref="CDD:239860" misc_feature 4676..4678 /gene="RhoGAP19D" /note="catalytic residue [active]" /db_xref="CDD:239860" polyA_site 8996 /gene="RhoGAP19D" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cacctctact atccactcga aaatcacatc ggaacgaaat cgagtggaaa gcggagcgaa 61 aaaacaagaa agtagattaa aaacacacaa ttacaattaa ttaattgtaa tttgcccgaa 121 aatgcaaaac agtgtgtgcg cgcgcgaacg cagggttatc aattgaatta aaatcaacaa 181 ctttgcaaaa atttaaacga taacaaaaat atacaaaagg aggaaatcaa caataatttg 241 taaaaaaaaa atccaggaaa acatcaagaa aattataatc atcctgtgtt tttgatgacc 301 tccgtttacc cttcgatcga tcggcaagga gattccgtag catcggtact atggtaatat 361 cgatcggtac gatgggcctc gttgggccgc agccacatcg aaaatttgca acgtatcgca 421 ggctgtaaag gaaaattccc tcccctccac acacacacac agagacagag gaaaaaacaa 481 aactgcaaat cgaaattgca gatagaggat aagagatatt tagccgatag aagaggaaaa 541 ccaggggtga agcaccaccc ccacccaccg tcacacaaat gagggtgcca ccaacaacag 601 gttgaccacc aaaaaaaaaa acagaaaaaa aagagtagag agtaaataaa aaataacaaa 661 caaaataaca tagtaataaa aaaagccaac cgcacgacaa atagaaaagg caacaacaac 721 agaaaccacc aagccacaaa gccagccacc gaaggagata gagcgcctaa aacaaagcga 781 gagagtgtgt aaacagaaga ggcgaaatac gaaatacgaa atacaaaata caaaatacga 841 aaagcagtag gaaaaccccc cctggaaaac cactagaggc ccccgctaca aaatgttaca 901 aaactcgaac gccgctgccg ctgcgcaggc ggcctcagcg gcttcagcgg tggcagcagc 961 agcggccaac aatgcggcac tggcggcctc ctccatccag cccaagctca tcgtcatccg 1021 ccggcgaccg aaccagggat tcggcttcac gctgcgccac ttcatcgcct atccgccgga 1081 agatgaccag tcatcggcaa cggcggcatc ggcatcggta tcggtatcgg gcaactggcc 1141 acaggaagcc tccagtatgg ccggcagcag cagcggcagc agcagcagcg tcgccgtcgc 1201 cgggatcacc ggtttggagc caacgtcacc gacgtcgctg ccgccgtacc aagtgaaagc 1261 gatggagacc attttcatca aagaggtgca ggcgaacgga ccggcccact acgccaacct 1321 gcagacgggc gaccgcgtgc tgatggtcaa caaccagccg atcgctggca tcgcctacag 1381 caccatcgtc tcgatgatca agcagacgcc gtcggtcctc acgctgcacg tggtgcccaa 1441 ggagtgcgat gtcctgcaga tgcactatac gagcattgcc cacacgccgg agtcgaatcg 1501 cctgaccatg tcgacgcact cgccctcgct gctggccaac ggctcccaca agaccacatt 1561 tccagcagca acagcagcag cagttccagc gccaccgcag cagcagcagc agcaacagtt 1621 gatctcatat cccgctgttg cagccgtgac cacatcatcg ccggcaggat cgccgcactc 1681 gcaatcgcat cccaactccc atcatgcgcc ctccctgcac ggaggcagtc gatcgggcag 1741 catcaccagc acggccagcg gaggcatcac catcctgagt caccagttct acccacagca 1801 gcagcagcaa cagcagcagc agcaacaaca tcgtcatcca gcgctgactg gcggcagcag 1861 cagcatcgat ttcggggaca tggcacatgg actgcggcaa catcagcagc agcagcagca 1921 acagcagcag caacatctct accagcagca gcaacatcat catcagttca tgcgtgccaa 1981 tcagccgcca aatttaacag tattatcggc cagctcggca acgaacacgc ccacacccac 2041 gcccactgcc cgccagccga aatcggcgac ggttctcagc caggcgttgt atgcgggggt 2101 gggagttggc gcgggtccca gttcagccgg cggatctgga tcgggatcgg gatccctttc 2161 ggggggcagc gagaacagcg acctgatgat ccgactgcgc gaatcgatca agcagaagga 2221 ggagttcctc aagtcgccgg tgccagcctc cctttcatcc tccaactccg cttcctcctc 2281 gaccaatggc aaccaggcgc cgcaatcctc ctcgtcgccg gcacagcagc agcagcagca 2341 gcagcacttc tttccctcgc acacgccgcc aagtggagtt ggtgtccaag taatggtgcc 2401 accgccacgc agtcgccacc aagtgatgtt aaagcagcaa cagcagcagc aacaacatca 2461 tgtccttggc tatgatatgt actattccgg tggcaagcta gtgcagcgat cttccacggc 2521 tcccggaagt gtgagccacc accagcagca gcaaattcat catcaccagc agatccaaca 2581 gcagcagcag cagcaacatc gcaaccaggt gatgatcaac aacaatgcca agtatgccaa 2641 ggatctggac tattttgaga cgctgcagga gacgggagtc accaataagg ttttcgagcg 2701 caaactggtg tcgcacatgt ccaagggctt tgatcccttc aagccgctgt cgatcaacac 2761 cagcgccatg gagtcctcgg ccagcacatc gagcagctcc acggtcacct cgacggtgaa 2821 gaagcagagc gtgctgtacg agtccctgca gcagcatccg ctggccaagt accatcagac 2881 gcagcatcag catcagacgg caacgacgac ggtggacggg cagacgagca gtcggatgga 2941 gctgcacaag gcgacgctgg cgaatgccac catcgatcca atgccaccat cgttgccgcc 3001 ggtggcaccc agcagcaagt ttgtggataa gccgcccgcg ggctcctcct ccgttgccac 3061 cttggcggac attgccgaga gcagtgcggc ggccattgtg gactgtgcgg ttgtgggaag 3121 cggcaacgtt gtgcggcgct acaaacctct gtcatccagc tcctttgacg aaggcaaacc 3181 gatgcgcagg atctcctatc tgcgggccac caacaatgag gccgatttca atgcggcgga 3241 ggcagcagca gttgcagcag caggaggcgg cggaggagat gcagcagctc ctccagcggc 3301 ttcttcatct gctccagcac ccactcccgc accctccgca cccgcacccc tgcccatttc 3361 gatccccatt ccggtggctg ctgtcgtgga gccgcagaag acgaaatccc tggtggagga 3421 gcatccggat cccacctacg atgtgatcgg cggcactggc ggcggtcacg agttcatcga 3481 gacgcccaac ggcctggagg atgtgcgtct gtcggcccac gggagtcgca gggcctccat 3541 gagcagcgac atgcgcagca gcatccacat tgatgccgag ttgaatggca agtatgtgcc 3601 caacgaactg gaggccttcg aaacggagat cgagatcaag tcctcctgca tcaacggaaa 3661 gcgcatgtcc gagtaccgat cgtggcgtca ggtgaagctg gagatcaagg gcgatttgct 3721 gcgcatctac tcaggccgcc atgccaaatc ggagcacaat gtgatagaac tcgatattag 3781 aaactttaag ttcttcgacg agtcgctgga taagaagaag tacttgattc gcatgcagtc 3841 gaagccatcg cccagtggcg cccacttggc cacgctgggc aacgagttga atttggatga 3901 ggcatctgct gctggtaatc acgacaagct gctgacctcc tcgggcagca gcggtgtaaa 3961 cgaagccact cagcagcagc aacaggcggc gacgaactca tcatcagccc tcaccgcatc 4021 cacctcctcg tccacctgca gcagcggcgg tccctacacg gagatcctct tcaagaccaa 4081 gagcagcaac gagatgaaac gtctgtttgg cctgctgcag tggaaggaca gcctcaacta 4141 cgatgataat gagcatcagc aacagggaaa acaactggcg gagccacaga agacagcggc 4201 cagtgccagc tatctggacg atgtccaggg tggcggagga acagcagctg ccggagcagc 4261 ggacagctct ccgctgagct cccattcggg tgggattaca gatcatcatc atgtctcggc 4321 tctgccagcg gctgcggcca ttgtggccgc caccagcgac tccatatcgc cggtgatgaa 4381 ggccaggaag tcgtcgtcgc acaagcatat acccgacaag gatttgggct cgccaaagtc 4441 gaagaactgg aaggatttgc tcttccgccg cggcggcagt ggcagtggca ctagcggagg 4501 agtctctcat cacgacctcg cctcgccatc ctcgtgtgcg gccaagcaga tcggctccat 4561 tggcgttccc ctgcgcagct gccccatgtc gaaggtgaat gcctgcgtgc cgcatctcgt 4621 ggaggtgtgc acgaacattg tggagaccaa gggcctgggc gtggtgggca tctatcgcat 4681 acccggcaac aaggcggcca tttcggagct ctccgagctg gtcaacacca aggatttcca 4741 gttcgagagc tgcgcgagtg acgatcgctg ggaggatgtg aatgtggtga gcagtctgct 4801 caagctgttc attcgcagcc tgccggatgc tttgatgccg gctagctact acattaattt 4861 catcgaggcg gacaagaagt tcggcctgga gaggattgtg ctgctgcgcg agattgtgga 4921 gtcgctgccg cgtcatccgt acgagaccat gaagcatttg atacggcatc tgtgccgcgt 4981 tagcggaaat tgtgaggtca atcgcatgga gcccaagaac ctggccatca tctttgggcc 5041 ctcgatcatc cggacgccga acgacacgct ggagacggcg gtcaaggata tgaagcatca 5101 gtgccgcatc gttgagctgc tggtcacgca gtacgactac ttctttgagg gtggcagtct 5161 gccggatttg gcggaggtga gcggcggtac ggccgccgtg aatgccgccc agccgcagca 5221 gcagacgcag gaggatcaga cgagcatgct gctgcataat ctctcgaaga tcgagcggat 5281 caccgagcgg gagacgacgc gcacgtcgcg cttcatgccg cagctgaggc gcaagacgca 5341 tggcaagcgg agcgccgtaa actcggacac gtactccggc gagagtgttc tgtcgctgga 5401 ctacgccaag gtatcgacct ccgcctcggc atccgccagc agtaccgcca gtacctcgag 5461 cagctgcaag gtggcctccg catccgcctc cgcttcgtcc tcgtcgagtt ccaccaccaa 5521 gttcagctcc tcgtcgtcgt cggcctcctc gaccacggcg gtggccgttt cctcatccat 5581 ctcgtccaca tcctccaagt tgttgagtgc caacttcaag aagcgcagca ctggaggatt 5641 tctgggttcg agatcatcgc accagacgac gcgcaaggcg agcctggatg agaaggactc 5701 gggtcagtcg tcgggcagtc tgggccacag cctgggcgtg ggcctgaatc tggccaagga 5761 gcagcagcgc agcagcgtgg acatatccat actgctgacg gacgacgact ccagcagcag 5821 gctcagcgat acgggttcca tgtcgctgac caccatcaca gacacgctgg acagcaagct 5881 gcgcaatttg aggagcggct ctgaatcgaa cgacgagaac ggatcgcccg agttccccaa 5941 gaaccggcgg cacaccctcg gccagccgct gcacctgcac tccgagaaca ttccgtatgc 6001 ggacgagtcg cccgagcggc tcttccatca gttttgcaat cccctcgacg caccaccgct 6061 gtcgctccat ctgagtcgct cctgcacggc caccaataca attggcgatg agaagccatc 6121 gaagcagtcg ggcagcgttg ctcctttgcc gcccagtctg ctgaaggcgg cccacaagct 6181 gcagcactcg gccacggtgc ccatacatca gggtagctcc acggcaccca cgagtggagc 6241 ggccacgccc gttggcacgc ccactgggag cagtggcgtc gtcgtcgtcg gcgccattcc 6301 ctcgcgcagc tcctcgagca gcgtgaccac gctaaccaag agcatacatc ccagattcag 6361 taactatttg agctacgaga ggagcagcgc agcggcagct ggtggaggaa cctctactgg 6421 atccgcagga ggagctgcct ccgaggacga ttccgagggc tcgaccacca gtgatcccaa 6481 ggagaagctg ctgctcggcg aacgaccctc gccgtcgttt tttctcgagc gctacaacaa 6541 gaagagacgc gatcatcggt tatttcggag tgccagcttc aattgccgca actactccac 6601 caggcacatg acgagcacac aaccagcggg agtagccagt ggagtagctg tagtagtggg 6661 cgcggcctgc tgccaggcac tgagtgccgc caccgggctg accaaggacg agaagactga 6721 catgaacctg accaagaagc gccagatcca gaacaagcag aatcgttcga ttaagcgacg 6781 ccacacggtc ggtggtccgc acgactattc ggccagcaat ggcagctgct cgaatcatgc 6841 gcacggtcat gatttggcgg ccataaacta caatcaccac aatcgccatc atcagcagca 6901 gctgctgaag ctgggcagcg cctcgtccgc cggcggaggc agtgtggcgg cggcggccga 6961 gacgacgacg accacaacga ccaccaccac ggtgctgcgg cgattgggag gaacagcggc 7021 gactgggcag gctggcggcg aggcgagtgt ggccctgcca ggatctagtt cgggatcgag 7081 cagcaataat aataactcgc cgcaaagcga tggaagtaat ggaaatggcg gagcagctgg 7141 agttccctcg agtgtccaac caactggggt caccaacagc agcggcagca acagcggcag 7201 cagcagcaac agcagcagca acagcaccac gcccgccggc aacggagatc aggtgttgga 7261 ggtgggcata cgcatcaaga acatcaaccg aggacgcttc taaagaaaag gatctctgta 7321 aatctgtaaa atcacatata tcaaaagtgc agattgctgc agtgaaacct caacctaaac 7381 ctaaaatagc agttgcttaa caagcacagt ttacacgagt attaacaggg tttaatatga 7441 gaaacaaagg cataggatga agttatttaa caatagtctg ttaaacacac aaatgctaaa 7501 cacacatttt aaaaacaaaa gtttaaatga atgttaacct gagtaaagtt gctaaacaaa 7561 aaaaaacagg agtcgttgta gtaagaagaa tttgaagatt tccatgtagc aatgtcaaag 7621 aatttgattt aagctactag aaaatgcgca aaaaatactc taacctactt cgattctgta 7681 aaaaatagtc accataatct atattactat atatctattt caacgtacag ttgcaaagtt 7741 gagtccgaat tgggttttaa aagttaacca aaaggaatgt aggaagcgat ttgattgcaa 7801 aacaaatcag cagagcagtt aaaatacgta ttatcacata ttctatcacg atatattata 7861 tattcatgtg cagcagatcc cagggagttg tgttgtaagc ctaaaaactg tcaaacgaca 7921 ttgaatattc ataaaaaaaa aacccaagca gacaaacagt aataaagata catccgagat 7981 tgaaacgcta aatgcactct actcctaaat acacaactcc cggggcaaaa ggaaatctta 8041 acaatgcaac gcagaaaaaa caatcttaga tgaaaactct acgagggcag gaagtaattt 8101 attcgcacac acaaaataca caaaacacac aaattaaatg ggaaccaagc taagatctgg 8161 atttagacag agagagatat atagcgagag acagagagag atatatgcgg ggagacgaag 8221 ggttagagat agagagagag agagagaact attttgtaaa acgtatacaa cacaatacag 8281 aaaaatcgca taaatatcca cctatgtata ggaacaatcg aaagtgtcgc ctgtccggga 8341 aatcggacga gtccccctga caaccaagtt gtgctaggga tcccttgata gggatcgctt 8401 tttgtttagt ttaaatgtgc atttgtttat tttttatttg tgtacctgtg tacctgctgt 8461 aagaaaaaag tggaggaaaa ggggatccca tttttggtgc cttaaattat ttgctttaaa 8521 ttctggaaaa cctatttttc tacccacaac attttttttt tatatttttt ggataaacaa 8581 aatttttttt acctcgggcg gtgctgtagg aaatgcatga tataggtgca gctatataac 8641 tctatagcag ggacatatac acatatattc cgcacaaaaa gctaatgtct agacaggcga 8701 ccggaagagg gataccatgt tcgaaatggg gtttgattga taaagtgacc atatgcttac 8761 gcatataacg catgagaaac ggcataaatt tacatttaca tatataatat tatatatttt 8821 tgtgtagttt gtatatgatt taagtttggc aacaacaaga acgcataaaa gtacatgcaa 8881 atatatatga ttaagcaatt agattatagt tgtatagtat tcctcccatt ttttttgctg 8941 tatatacgat ttaatttttt ttcatttcat tcacaattat gatttacatc cccccc