PREDICTED: Drosophila takahashii Cytochrome c oxidase assembly

LOCUS       XM_070219015            1204 bp    mRNA    linear   INV 09-DEC-2024
            factor 7 (Coa7), transcript variant X2, mRNA.
ACCESSION   XM_070219015
VERSION     XM_070219015.1
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1204
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1204
                     /gene="Coa7"
                     /note="Cytochrome c oxidase assembly factor 7; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins"
                     /db_xref="GeneID:108065502"
     CDS             61..861
                     /gene="Coa7"
                     /codon_start=1
                     /product="cytochrome c oxidase assembly factor 7 homolog"
                     /protein_id="XP_070075116.1"
                     /db_xref="GeneID:108065502"
                     /translation="MAYDLKKESDVKEYVDKLGVEYRFGCYSEKKPEACHLLGDYLEG
                     IKKDFEKASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGDPRVAYEYYEKGCNL
                     NDSDACLHSGLLLVSRSMPKEIDRNVPKGLEFLTKSCDMNNATACFYLSGMHISGVQK
                     KPDQSAVAASAGSGPTAPPAGKTPLKDSDYIVLKDMKKAFQFAHKACELRNMYACANL
                     SQMYARGDGIEKNEKEAEKYKKLALEMQDEVKKQQETLGFQQGVGMPN"
     misc_feature    <154..792
                     /gene="Coa7"
                     /note="TPR repeat [General function prediction only];
                     Region: TPR; COG0790"
                     /db_xref="CDD:440553"
     misc_feature    202..294
                     /gene="Coa7"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     misc_feature    322..411
                     /gene="Coa7"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     misc_feature    439..528
                     /gene="Coa7"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     misc_feature    643..732
                     /gene="Coa7"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     polyA_site      1204
                     /gene="Coa7"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcagaagacg aaagcataac ataataattt ttggttgtta tctattaaaa atcgctgacc
       61 atggcctacg acctaaagaa ggagtcggac gtgaaggagt acgtggacaa gttgggcgtg
      121 gagtaccgat tcgggtgtta ctccgagaaa aagccggaag cctgccacct gctgggtgac
      181 tacctggagg gcatcaagaa ggacttcgaa aaggcctcca aggtgtacaa atcgacgtgc
      241 gacgactacg gttacgcaaa gtcctgctac aaatacggca actacagctt cctaggcaag
      301 ggcaagagcg gcagcaaggg ggatccccga gtggcctacg agtactacga gaagggctgc
      361 aacctgaacg actcggatgc ctgccttcac tccggcctgc ttctcgtctc gaggtccatg
      421 cccaaggaga tcgacagaaa tgtgcccaag ggcttggaat tcctgaccaa gagctgcgac
      481 atgaacaacg ctaccgcctg cttttaccta tccggcatgc acatctcggg cgtgcaaaag
      541 aagcctgacc agagcgcggt ggctgcatcc gccggaagtg ggccaacagc accacccgcc
      601 ggaaagacgc ccttgaagga ctcggactac attgtgctaa aagacatgaa gaaggcgttc
      661 cagttcgccc ataaggcgtg cgagcttcgc aacatgtatg cgtgcgccaa tctcagccag
      721 atgtacgccc ggggcgatgg aattgagaaa aacgagaagg aggccgagaa gtacaaaaag
      781 ctagccttgg agatgcaaga tgaggtcaag aagcagcagg agacgctagg gttccagcag
      841 ggcgtgggca tgcccaattg attcagattc agtttgattc ctgctactaa ctattgctgt
      901 tatttcgcca tcgcttagtc cactgttttt tttgtcttca tgcgtatcat tatcaggttt
      961 cccttttcag tcggtctaac attagtggct aaactaacta acttgtgttt gtaatttctg
     1021 tgtacatagc gggcatttac atgcgacgga gcgagagaga gaaggcgtaa cgaagagaaa
     1081 ttcatagttt taattgttaa agttatcaag taacaaatga gaaaccctta aaccattctg
     1141 ttgatacctt atatacaaaa tataaaccag tcctaccaaa ggacgttgtc gtaaaactcc
     1201 atta