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LOCUS XM_070218996 8462 bp mRNA linear INV 09-DEC-2024 variant X11, mRNA. ACCESSION XM_070218996 VERSION XM_070218996.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8462 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8462 /gene="X11Lbeta" /note="X11Lbeta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108060874" CDS 481..6630 /gene="X11Lbeta" /codon_start=1 /product="uncharacterized protein X11Lbeta isoform X5" /protein_id="XP_070075097.1" /db_xref="GeneID:108060874" /translation="MVSTTLTTLAAGQTTSSSNHHHHHHHQQDQLQQQQHQQLQQQQH QQLPYQRLQPHAAAAAAAVGQQRGFYALNGSLELDCDSSNSNSYQQHQQQQQQQQQPP LILSQALLSPSPPLNDQINLLFPKCRPKQQPQQQQQQPQQHQTAQQQHAHLADVNTNS NSSSNRSSSPTTAGEREPLEIVGASSSPPPAKATPTSTPSYYKSVNIITQSPPPHSAS SHSSESLSSVTPRISTNPFLCAPLTPPTPPHHQQQQQQQQQQETEATGESAVERSRSG GAAGEEPDYPASFYYHTVGESRRGPGGYAEMPRKRSAALPASNRQQQQQQQQQQQQLL NGNGSQNPFIKENYWEAPPTRASLLLHSPTEYSEEQQQQQQQQQHIHASARRAYHQQR EQVYGISQRAQQQQQQQQPHILRVGRSPVNRSFSQQQQQQIAAARSNPCADGLTPLAS HYLYGSKSSLDQQPGDWEPREQRKLRLREEREREREREREREREREHLLLEQQQQLQL QEVQAARENHLSHLVGQQQQQQRKRHVYGEERDRERERERERDRERDLERDHRLVNGN ADPNESWQQYEGSPRRIGVTTSNLGPVTAASGASAIAGAATPADESEPPAAVEVATTP PQQQQQQQQQQVPMAAVPPLSSTATSLQKTAARAALAALAQSHPHNSHNILSSLLPNS SNPNPLNPSQMQIHSPQQPMQNYPVRPGFPQRIISPPNREPRSNSPPLQQQQQHQQQQ QHQQQQHFASLMSNHSNNSNTNKQPLSSDNNAEDTSNDVSEIGTISDLTAPEAVGLGL AIGSAAGEVASRAATPPLLALGPPTAVAGSSANGTATGNGSGNGNGNGTVSGNATAAA TGLGPLSLHTKSSTFDYLYEFSETRKVLEEFFKCPSTDEQPIMENGSDVDSIDIQYEF HSNFERDDEDLAEEEEAEDDEEGDDDADEENDEAEDEDEPLGQDRDQNYRQQAPPTAG HASERLVYGGYGGQQSQPQLISQPLGVGMGVGVGVARRHYSGSPLMRDFDFFLDSTSR SSGERDGDQDGLNHNQLLSTGSGPGGVGVGVGPGGGHNYRYSPETTDYDSNCGDLDSL SGEMNGGVSTSCSNYAKYYASAMPVLEDGLSSGHTSDTENNNNNQKNNLQQAAAQGQQ GHQGQQGQPQCPTSLSGSTSIGGGISMLMDMKRVSTNNSLNSMHNLTTTASTTDSNGG VAGHHLVATPSPSNGQSKGQPQSNQPKTLSLDQSPSNNHSKVFKNIDPELDSLYSIGV FHRPDTVQMTPPPPAPAPHRKPNNNGNGNANSNAMVNSNGTGNNDVDLLQPSSKHTHT PLAAAISSTLQRSSPTLAASGNGNGMGIGIGSGKPRSAGSNCSSIGVPPPIPERSNLP NVAATQRSPSPGLNSPVWLSRKEGLLESGSDNNHSKNHSADEEDVDTDLETDRLLGHQ RLDDQGYYDENKSWDRKPRSLLSKISPKQQMPSTKTRNGYNALLSSTPELPPPIPPKG GMGNMGNGGKLLDLVGGMVQRSISRSSSEHSDKCSPSKLGMPLSISGGDVDVVASAVA AAAVAAASATSTAAEAALGSPGNGGGSERSTAGGGGGGLTNPGGAVKLVEPENAALNG GMTSGAGTGSGAGSGSGSGAANGTAVATTATANNNNNVGNSNSNNSSGSGAGSNSNSG EKKVKKSKSKEGGAVLIEGVLFRAKYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKAPD GDVQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVPQ DIDDAPKPNRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHRFVKEMD YQEVLNSQEIFGDELEIFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANL MSSGAAARCGQLNIGDQLIAINGLSLVGLPLSTCQTYIKNTKNQTVVKFTVVPCAPVV EVKIKRPETKYQLGFSVQNGVICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKI VNLLATSVGEILMKTMPTSMFRLLTGQENPIYI" misc_feature 5524..5982 /gene="X11Lbeta" /note="X11-like Phosphotyrosine-binding (PTB) domain; Region: PTB_X11; cd01208" /db_xref="CDD:269919" misc_feature order(5557..5559,5791..5793,5890..5892) /gene="X11Lbeta" /note="putative phosphoinositide binding site [chemical binding]; other site" /db_xref="CDD:269919" misc_feature order(5611..5613,5758..5760,5767..5784,5914..5916, 5947..5949,5956..5958) /gene="X11Lbeta" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:269919" misc_feature 6079..6336 /gene="X11Lbeta" /note="PDZ domain 1 of amyloid-beta A4 precursor protein-binding family A member 1 (APBA1), APBA2, APBA3, and related domains; Region: PDZ1_APBA1_3-like; cd06720" /db_xref="CDD:467203" misc_feature order(6112..6132,6172..6174,6181..6183,6271..6273, 6283..6285,6292..6297) /gene="X11Lbeta" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467203" misc_feature 6346..6579 /gene="X11Lbeta" /note="PDZ domain 2 of amyloid-beta A4 precursor protein-binding family A member 1 (APBA1), APBA2, APBA3, and related domains; Region: PDZ2_APBA1_3-like; cd06793" /db_xref="CDD:467255" misc_feature order(6388..6408,6421..6423,6430..6432,6517..6519, 6529..6531,6538..6543) /gene="X11Lbeta" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467255" ORIGIN 1 ttccccagtt cgtttgatgc gttcgttcct tcgttcgttc gttcgttgtg tttgccaagt 61 tcaattttgt tgtactcgaa ttcccaactg gccaagaaac cagattgccg gaactcggaa 121 ttggcaagaa acaaaacaac agccaagcag acaagcaaac aagcaaacaa acagcaatat 181 aaatcgaaac cttaacccaa tctaaatata tatattcatc caaacctaaa gtgtgtctaa 241 tcacaaattc ttaatgtaaa attctcttta aactaaataa ttcaaacaca aatcacacaa 301 accgaaaacc aaaatctaaa ccaaacaatc gaatcgaatt gaatcgactc gaaatcgaaa 361 tcgcagaccc aggcaaaact cgcattgacc accaagcata tgagcttgtg gctaaaggtg 421 tctccggcat cgacttgttt catgttgtaa ctcgaggact ttcgtttatt ggcaacaata 481 atggtcagca caacattgac aacactggct gctggacaaa caactagtag cagtaatcac 541 catcaccacc accatcacca gcaggatcag ttgcagcagc agcaacatca gcagttgcag 601 cagcagcagc accagcagtt gccctaccag cgactgcagc cacacgcagc agcagcagcg 661 gcagctgtcg gccagcaacg cggcttctac gcactcaacg gcagcttgga gctggactgc 721 gacagcagca acagcaacag ctaccagcaa catcagcagc agcagcaaca gcagcagcaa 781 ccgccgttga tcctgtcgca ggctctgctg tcgccatcgc cgccgctcaa cgatcagatc 841 aacttgcttt tccccaagtg ccgacccaaa cagcagccgc aacagcagca gcagcagccg 901 cagcaacatc agacagcaca gcagcaacat gctcacctgg cggacgtgaa taccaacagc 961 aacagcagca gcaatcggag cagcagccca acaacagccg gtgaacggga gccgctggaa 1021 attgttggtg ccagtagtag tccaccgccg gccaaggcca cgcccaccag tacgcccagc 1081 tactacaaga gcgtgaacat cataacgcaa tcgccgccgc ctcactcggc ctcgtctcac 1141 tcctccgaat cgctttcctc ggtgacgccg cgcatctcca cgaatccctt cctctgcgca 1201 ccgctcacgc cgcccacacc gccgcaccac cagcagcagc agcagcagca gcaacaacag 1261 gaaacggagg ccaccggcga gtcagctgtg gagcggagca ggagcggagg agcggccggc 1321 gaggagcccg actatcccgc ctccttctac taccacacgg tgggcgagag taggcgtggt 1381 cccggcggct acgcggaaat gccgagaaaa cgcagcgctg ctttgccagc cagcaacagg 1441 cagcagcagc agcagcagca acagcagcaa caacagttgc tcaacggcaa tgggagtcag 1501 aatcctttca tcaaggagaa ctactgggag gcgccgccca caagagccag tttgctgctc 1561 cattcgccca cggagtactc cgaggagcag caacagcagc agcaacagca gcaacatata 1621 catgcttcgg ccagacgagc ttaccaccag cagcgggaac aggtgtacgg aatcagtcag 1681 cgggcacaac agcaacagca gcagcaacag ccgcacattt tgcgggtggg aagaagtccg 1741 gtgaatcgca gcttctccca gcagcaacag caacagattg ctgctgccag gagcaatccc 1801 tgcgccgatg gactgactcc gctggccagt cactatctgt atggcagcaa gtcatcactg 1861 gatcagcagc caggcgactg ggagccgcgg gagcagcgca aactgaggct gcgcgaggag 1921 cgggaaaggg aaagggagag ggagagagag cgagaaaggg agagggagca cctgttgctg 1981 gagcaacagc agcagctgca actacaggag gttcaggcgg ccagggagaa ccacctcagc 2041 catttggtgg gtcagcagca gcagcagcag cgcaagcgac atgtttacgg cgaggaacgg 2101 gatcgagaga gggaaagaga aagggaaagg gatcgagaac gggacttgga gcgggaccat 2161 cgcctggtca atggaaacgc agatcccaac gagagctggc agcagtacga aggctcgccc 2221 agacgcattg gagtgaccac cagtaatttg gggccagtga cggcggcatc aggggcatca 2281 gcgatagcag gagcagcgac accagcggac gaaagcgaac caccagcagc ggtagaagta 2341 gcaacaacac caccacaaca acaacaacag cagcagcagc aacaggtgcc catggccgcc 2401 gttccgccgc tgagctccac ggccacctcg ctgcagaaga cggcggcccg ggcagcactg 2461 gccgccctgg cccagagcca cccccacaac tcccacaaca tcctcagctc cctgctcccg 2521 aactcatcca acccgaaccc actgaacccc agccagatgc agatccactc gccgcagcag 2581 cccatgcaga actatcccgt tcgtccgggc tttccacagc gcatcatctc gccacccaat 2641 cgtgagcccc gcagcaactc gcctcctctg caacagcagc agcaacatca gcagcagcag 2701 caacatcagc agcaacaaca ctttgccagt ctgatgagca accacagcaa caactcgaac 2761 accaacaagc agccgctgag cagcgacaac aacgccgagg acaccagcaa cgatgtgtcc 2821 gagattggca ccatatccga cctgaccgct ccggaggcag tgggtctggg cctggccatt 2881 ggatccgccg ccggcgaggt ggccagccgg gcggccacgc cccctctttt ggcactcggg 2941 ccaccgacag cagtcgcggg cagctctgcc aacggaactg caacgggaaa cggaagcgga 3001 aatggaaacg gaaacggaac cgtaagcgga aatgcaacag cagcggccac cggactgggt 3061 ccactgagcc tgcacacaaa atcgtcgacc ttcgattacc tctacgagtt ctcggagacg 3121 cgcaaggtgc tggaggagtt cttcaagtgc ccctccaccg acgagcagcc cataatggaa 3181 aacggcagcg atgtggacag cattgacatc cagtacgagt tccacagcaa ctttgagcgc 3241 gacgacgagg atttggccga ggaggaggag gccgaggacg acgaggaggg cgacgacgat 3301 gccgacgagg agaacgacga ggccgaggat gaggacgagc cgttgggtca ggatcgcgac 3361 cagaactacc gccagcaggc gcctcccacc gccggccacg cctccgagcg actcgtctac 3421 ggcggctacg gtggccagca gtcgcagccc cagctgattt cccagcccct gggcgttggc 3481 atgggcgtgg gtgtgggcgt ggcacggcga cactacagcg gcagtccgct gatgcgggac 3541 ttcgacttct tcctggactc caccagtcgg agcagcggcg agcgggacgg cgaccaggac 3601 gggctcaatc acaaccagct gctgagcacg ggcagcggcc cagggggcgt gggagtgggc 3661 gtgggcccgg gcggtggcca caactaccgc tactcaccgg agaccaccga ctacgactcc 3721 aattgcggcg atctggacag tctctcgggt gagatgaacg gcggcgtgtc gacctcctgc 3781 tcgaactacg ccaagtacta cgcctcggcc atgccagtgc tggaggatgg gctctcctcg 3841 ggtcacacca gcgacacgga gaacaacaac aacaaccaga agaacaacct gcagcaggcg 3901 gcggcccaag ggcaacaggg tcatcagggt caacagggtc aaccgcagtg ccccaccagc 3961 ctgagcggaa gcaccagcat cggcggcggc atctccatgc tgatggacat gaagcgcgtc 4021 tcgacgaaca acagtttgaa cagcatgcac aacctgacca ccaccgcctc caccacggac 4081 agcaacgggg gcgtggccgg tcaccacctg gtggccacgc ccagtcccag caatgggcaa 4141 tcgaaggggc agccgcagag caaccagccg aagacactgt cactggacca gagtcccagc 4201 aacaaccaca gcaaagtgtt caagaacatt gatccggaat tggattcgct ctactcgatt 4261 ggagtcttcc accgtccgga cacggtgcag atgaccccac cgcctcctgc tccggcgccg 4321 catcgcaagc ccaacaacaa tggcaacggc aatgccaatt ccaatgccat ggtcaacagt 4381 aatggcaccg gcaacaacga tgtggatctg ctgcagccga gcagcaagca cactcacact 4441 ccgctggcgg cggccatcag ttccacgctg cagcgcagtt cacccacctt ggcggccagc 4501 ggaaacggaa atggaatggg aatcggaatc ggaagtggca agccccgaag cgccggcagc 4561 aattgcagca gcattggcgt gccgccgccc attccggaga ggagcaacct ccccaacgtc 4621 gccgccacgc agagatcacc gtcgccgggc ctcaactcac ccgtctggct gtcccgcaag 4681 gaggggctgc tggagtccgg ctccgataac aaccactcga agaaccacag cgccgacgag 4741 gaggacgtgg acaccgatct ggagacggac cgcctgctgg gccaccagcg gctggacgac 4801 cagggctact acgacgagaa caagagctgg gaccgcaagc cgcgctcgct gctctcgaag 4861 atctcgccca agcagcagat gccgagcacc aagacgcgca acggctacaa tgcgctgctc 4921 agctccacgc cggagctgcc gcccccgatt ccacctaagg gaggcatggg caacatgggc 4981 aacgggggca agctgctgga cttggtcggc ggcatggtgc agcgcagcat atcgcgcagc 5041 tcctcggagc actcggacaa gtgctcgccc agcaaattgg ggatgcccct ttccatttcc 5101 ggcggggatg tggatgtggt ggcctcggcg gtggcggcgg cggcggtggc ggcagcctct 5161 gccacatcga cggcggctga agcggcgctg ggaagtccgg ggaatggagg aggctcggag 5221 agatcgacgg cgggcggcgg cggcggcgga ctgaccaatc cgggaggagc ggtcaagttg 5281 gtggagccgg agaacgcagc cctcaacggg ggaatgactt ctggagcggg cacaggatcg 5341 ggagcaggat cgggatcagg atctggagcg gccaatggaa ccgcggtggc caccaccgcc 5401 accgccaaca acaacaacaa cgtcggcaac agcaacagca acaacagcag cggcagcggg 5461 gccggcagca acagcaacag cggcgagaaa aaagtgaaaa agagtaagag caaagaaggc 5521 ggcgcagtgc tcatcgaggg cgttctcttc agggccaagt acttgggctc cacgcagctg 5581 gtctgcgaag gtcagcccac gaaatccacg cggatgatgc aggcggagga agccgtttcc 5641 aggatcaagg cacccgatgg cgatgtgcag cccagcaccg aggtggatct gtttatttcg 5701 acggagaaga tcatggtcct gaacacggac ctcaaggaga tcatgatgga ccacgccctg 5761 cgcaccatct cctatatcgc ggacatcggg gacctggtcg tcctgatggc ccgacgccgc 5821 ttcgttcccc aggacatcga cgatgccccc aagccgaatc gcacgcccaa gatgatatgc 5881 catgtgttcg agagcgacga ggcccagttt atcgcccagt cgattggcca ggccttccag 5941 gtggcctaca tggagttcct caaggccaac ggcatcgagg accatcgctt cgtcaaggag 6001 atggactacc aggaggtgct caacagccag gagatcttcg gcgacgagct ggagatcttt 6061 gccaagaagg agctgcagaa ggaggtggtc gtgccgaagg ccaagggcga aatcctgggc 6121 gtggtcatag tggagagtgg ctggggctcc atgctgccga ccgtcgtcat tgccaatctg 6181 atgagctcgg gagcagccgc ccggtgcggg cagctcaaca tcggcgacca gttgatagcc 6241 atcaatgggc tgagcctcgt gggactgccg ctctccacct gccagacgta catcaagaac 6301 accaagaacc agacggtggt caagttcacg gtggtgccct gcgcccccgt cgtcgaggtg 6361 aagatcaagc ggccggagac caagtaccag ctcgggttta gcgtccagaa tggagtgatc 6421 tgcagtctcc tgcgcggcgg catcgcggaa cggggtggtg ttcgtgtggg ccatcgcatc 6481 atcgagataa acaaccagag cgtggtggct gtgcctcacg agaagatcgt taacttgctg 6541 gccacatccg tgggagagat actcatgaag acgatgccca cgtccatgtt ccgcctgctc 6601 actggtcagg aaaatcccat atatatttaa gccagcggga gaataataaa cggcgattat 6661 tgttaactat aaaaacctaa caaggatatt acgatattta gtatatatat acctattcat 6721 atagaaagcg aggaaaacag agagagagag agttaatata tgtatgtata tgcgtgtgta 6781 cctatatata taaatatata tatatatata gatatatgct aaacatatat attacacacg 6841 agtgtatcga gatttttttt gtgagtaaac tagacaaagt tcgatcgaag gcgagttaag 6901 agcagctact acgacaaata agaggaagcg ataactaaca cacatggcac gcctttttgc 6961 aaagcttagt aataatagtt aataatgtgt gtgagatcgg gccatcggcc aggacatgca 7021 tatgcatata aacatgaaac aatatatata cacatatata tgaacacaat gacctttttg 7081 cgaaaacgtc cttagcttag ttgaacggcg acattagtca gagaatactg cagctagtaa 7141 cagccccccc aaatatgctt acccatactt attgtaaaaa ccaaaaataa aatccaggaa 7201 acacgaaccg aagacccaaa cgagattcaa gtccacacag gaggcaggca gctcttttga 7261 tatagtatat atataatcca cacactatat agcaccaccc caatatattt atataacaaa 7321 acagagggcg cgagaatgga tagcttgaaa tggatataag aatgaaaata ggaaatggat 7381 atggaaatgg aaatggatat tgtaactgca gcgtttcgtt ttctactcgc acccatagcc 7441 gagaattttg atagttattt aacggatata gccagatcgt aatgtatgca aagtgtaaat 7501 tgaggagcgc tttacacccc cacaaataca tacatattcc cccatagagg atttagttta 7561 gcagacactt acactcacac tcacttagac gcttcgattt caaccatctt cgtccaaaaa 7621 ttgtgctact actcgttaaa caagttgata gatatagaga gagattagag aaggataaca 7681 ggagggcagg agagagagac ggagagagga agggaaggcc ggcgaagaaa gagacagagt 7741 tagacctccg ttatgagcca taagatttaa aagaagacgg agacggggaa cagactcgaa 7801 cagaaagaga cggcaacagg aacggaaata gagacagaaa taagggcaga cagagaggga 7861 gaattgcatt tctttgtgtg tatatgtatg tgtaaaatac tcgctattgg cccaaatgca 7921 atccacgaac agccggcatc agcagtcact aagagaacta ttattaacta ccagtacgat 7981 ttaattatgt aacggcaaca gggcatttgc ttgatgtttg tgaattgaac gacttttcgg 8041 cctcatttcc gctgcttggc acgggccacg cccacgccca ccaaaaatcc aagaacaaaa 8101 accaaattaa tatacaaaac aagaacataa aacattaaca actgcttcag caaaccaatg 8161 agatgacatg aaaccgaaac aaatgcatac aagaactaat atttaatgaa ttgttttttt 8221 ttttttggtg tacattattt atatggaatg tgaaattgca taacaaattt aatgaatata 8281 ttgaatattt attaaaacgg gctaattgca tagaaattat ataagaacga tcataacgat 8341 gattatttgt aaaggcgaac taaacccaag aaaaccgaaa acagaataaa taaataaaag 8401 aatatataat cacatgcata acaaaaatat aaaaccaaaa attgagcata ataaacagaa 8461 aa