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LOCUS XM_070218994 8654 bp mRNA linear INV 09-DEC-2024 variant X9, mRNA. ACCESSION XM_070218994 VERSION XM_070218994.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8654 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8654 /gene="X11Lbeta" /note="X11Lbeta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108060874" CDS 481..6822 /gene="X11Lbeta" /codon_start=1 /product="uncharacterized protein X11Lbeta isoform X3" /protein_id="XP_070075095.1" /db_xref="GeneID:108060874" /translation="MVSTTLTTLAAGQTTSSSNHHHHHHHQQDQLQQQQHQQLQQQQH QQLPYQRLQPHAAAAAAAVGQQRGFYALNGSLELDCDSSNSNSYQQHQQQQQQQQQPP LILSQALLSPSPPLNDQINLLFPKCRPKQQPQQQQQQPQQHQTAQQQHAHLADVNTNS NSSSNRSSSPTTAGEREPLEIVGASSSPPPAKATPTSTPSYYKSVNIITQSPPPHSAS SHSSESLSSVTPRISTNPFLCAPLTPPTPPHHQQQQQQQQQQETEATGESAVERSRSG GAAGEEPDYPASFYYHTVGESRRGPGGYAEMPRKRSAALPASNRQQQQQQQQQQQQLL NGNGSQNPFIKENYWEAPPTRASLLLHSPTEYSEEQQQQQQQQQHIHASARRAYHQQR EQVYGISQRAQQQQQQQQPHILRVGRSPVNRSFSQQQQQQIAAARSNPCADGLTPLAS HYLYGSKSSLDQQPGDWEPREQRKLRLREEREREREREREREREREHLLLEQQQQLQL QEVQAARENHLSHLVGQQQQQQRKRHVYGEERDRERERERERDRERDLERDHRLVNGN ADPNESWQHLRVTTETLAEVGKLADKVHPNLNLNLNPNPNPNQGQNTEVNVYREHKLD AWKLERNYTLAVESRHGIIEYEGSPRRIGVTTSNLGPVTAASGASAIAGAATPADESE PPAAVEVATTPPQQQQQQQQQQVPMAAVPPLSSTATSLQKTAARAALAALAQSHPHNS HNILSSLLPNSSNPNPLNPSQMQIHSPQQPMQNYPVRPGFPQRIISPPNREPRSNSPP LQQQQQHQQQQQHQQQQHFASLMSNHSNNSNTNKQPLSSDNNAEDTSNDVSEIGTISD LTAPEAVGLGLAIGSAAGEVASRAATPPLLALGPPTAVAGSSANGTATGNGSGNGNGN GTVSGNATAAATGLGPLSLHTKSSTFDYLYEFSETRKVLEEFFKCPSTDEQPIMENGS DVDSIDIQYEFHSNFERDDEDLAEEEEAEDDEEGDDDADEENDEAEDEDEPLGQDRDQ NYRQQAPPTAGHASERLVYGGYGGQQSQPQLISQPLGVGMGVGVGVARRHYSGSPLMR DFDFFLDSTSRSSGERDGDQDGLNHNQLLSTGSGPGGVGVGVGPGGGHNYRYSPETTD YDSNCGDLDSLSGEMNGGVSTSCSNYAKYYASAMPVLEDGLSSGHTSDTENNNNNQKN NLQQAAAQGQQGHQGQQGQPQCPTSLSGSTSIGGGISMLMDMKRVSTNNSLNSMHNLT TTASTTDSNGGVAGHHLVATPSPSNGQSKGQPQSNQPKTLSLDQSPSNNHSKVFKNID PELDSLYSIGVFHRPDTVQMTPPPPAPAPHRKPNNNGNGNANSNAMVNSNGTGNNDVD LLQPSSKHTHTPLAAAISSTLQRSSPTLAASGNGNGMGIGIGSGKPRSAGSNCSSIGV PPPIPERSNLPNVAATQRSPSPGLNSPVWLSRKEGLLESGSDNNHSKNHSADEEDVDT DLETDRLLGHQRLDDQGYYDENKSWDRKPRSLLSKISPKQQMPSTKTRNGYNALLSST PELPPPIPPKGGMGNMGNGGKLLDLVGGMVQRSISRSSSEHSDKCSPSKLGMPLSISG GDVDVVASAVAAAAVAAASATSTAAEAALGSPGNGGGSERSTAGGGGGGLTNPGGAVK LVEPENAALNGGMTSGAGTGSGAGSGSGSGAANGTAVATTATANNNNNVGNSNSNNSS GSGAGSNSNSGEKKVKKSGAVLIEGVLFRAKYLGSTQLVCEGQPTKSTRMMQAEEAVS RIKAPDGDVQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMAR RRFVPQDIDDAPKPNRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHR FVKEMDYQEVLNSQEIFGDELEIFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPT VVIANLMSSGAAARCGQLNIGDQLIAINGLSLVGLPLSTCQTYIKNTKNQTVVKFTVV PCAPVVEVKIKRPETKYQLGFSVQNGVICSLLRGGIAERGGVRVGHRIIEINNQSVVA VPHEKIVNLLATSVGEILMKTMPTSMFRLLTGQENPIYI" misc_feature 5716..6174 /gene="X11Lbeta" /note="X11-like Phosphotyrosine-binding (PTB) domain; Region: PTB_X11; cd01208" /db_xref="CDD:269919" misc_feature order(5749..5751,5983..5985,6082..6084) /gene="X11Lbeta" /note="putative phosphoinositide binding site [chemical binding]; other site" /db_xref="CDD:269919" misc_feature order(5803..5805,5950..5952,5959..5976,6106..6108, 6139..6141,6148..6150) /gene="X11Lbeta" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:269919" misc_feature 6271..6528 /gene="X11Lbeta" /note="PDZ domain 1 of amyloid-beta A4 precursor protein-binding family A member 1 (APBA1), APBA2, APBA3, and related domains; Region: PDZ1_APBA1_3-like; cd06720" /db_xref="CDD:467203" misc_feature order(6304..6324,6364..6366,6373..6375,6463..6465, 6475..6477,6484..6489) /gene="X11Lbeta" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467203" misc_feature 6538..6771 /gene="X11Lbeta" /note="PDZ domain 2 of amyloid-beta A4 precursor protein-binding family A member 1 (APBA1), APBA2, APBA3, and related domains; Region: PDZ2_APBA1_3-like; cd06793" /db_xref="CDD:467255" misc_feature order(6580..6600,6613..6615,6622..6624,6709..6711, 6721..6723,6730..6735) /gene="X11Lbeta" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467255" ORIGIN 1 ttccccagtt cgtttgatgc gttcgttcct tcgttcgttc gttcgttgtg tttgccaagt 61 tcaattttgt tgtactcgaa ttcccaactg gccaagaaac cagattgccg gaactcggaa 121 ttggcaagaa acaaaacaac agccaagcag acaagcaaac aagcaaacaa acagcaatat 181 aaatcgaaac cttaacccaa tctaaatata tatattcatc caaacctaaa gtgtgtctaa 241 tcacaaattc ttaatgtaaa attctcttta aactaaataa ttcaaacaca aatcacacaa 301 accgaaaacc aaaatctaaa ccaaacaatc gaatcgaatt gaatcgactc gaaatcgaaa 361 tcgcagaccc aggcaaaact cgcattgacc accaagcata tgagcttgtg gctaaaggtg 421 tctccggcat cgacttgttt catgttgtaa ctcgaggact ttcgtttatt ggcaacaata 481 atggtcagca caacattgac aacactggct gctggacaaa caactagtag cagtaatcac 541 catcaccacc accatcacca gcaggatcag ttgcagcagc agcaacatca gcagttgcag 601 cagcagcagc accagcagtt gccctaccag cgactgcagc cacacgcagc agcagcagcg 661 gcagctgtcg gccagcaacg cggcttctac gcactcaacg gcagcttgga gctggactgc 721 gacagcagca acagcaacag ctaccagcaa catcagcagc agcagcaaca gcagcagcaa 781 ccgccgttga tcctgtcgca ggctctgctg tcgccatcgc cgccgctcaa cgatcagatc 841 aacttgcttt tccccaagtg ccgacccaaa cagcagccgc aacagcagca gcagcagccg 901 cagcaacatc agacagcaca gcagcaacat gctcacctgg cggacgtgaa taccaacagc 961 aacagcagca gcaatcggag cagcagccca acaacagccg gtgaacggga gccgctggaa 1021 attgttggtg ccagtagtag tccaccgccg gccaaggcca cgcccaccag tacgcccagc 1081 tactacaaga gcgtgaacat cataacgcaa tcgccgccgc ctcactcggc ctcgtctcac 1141 tcctccgaat cgctttcctc ggtgacgccg cgcatctcca cgaatccctt cctctgcgca 1201 ccgctcacgc cgcccacacc gccgcaccac cagcagcagc agcagcagca gcaacaacag 1261 gaaacggagg ccaccggcga gtcagctgtg gagcggagca ggagcggagg agcggccggc 1321 gaggagcccg actatcccgc ctccttctac taccacacgg tgggcgagag taggcgtggt 1381 cccggcggct acgcggaaat gccgagaaaa cgcagcgctg ctttgccagc cagcaacagg 1441 cagcagcagc agcagcagca acagcagcaa caacagttgc tcaacggcaa tgggagtcag 1501 aatcctttca tcaaggagaa ctactgggag gcgccgccca caagagccag tttgctgctc 1561 cattcgccca cggagtactc cgaggagcag caacagcagc agcaacagca gcaacatata 1621 catgcttcgg ccagacgagc ttaccaccag cagcgggaac aggtgtacgg aatcagtcag 1681 cgggcacaac agcaacagca gcagcaacag ccgcacattt tgcgggtggg aagaagtccg 1741 gtgaatcgca gcttctccca gcagcaacag caacagattg ctgctgccag gagcaatccc 1801 tgcgccgatg gactgactcc gctggccagt cactatctgt atggcagcaa gtcatcactg 1861 gatcagcagc caggcgactg ggagccgcgg gagcagcgca aactgaggct gcgcgaggag 1921 cgggaaaggg aaagggagag ggagagagag cgagaaaggg agagggagca cctgttgctg 1981 gagcaacagc agcagctgca actacaggag gttcaggcgg ccagggagaa ccacctcagc 2041 catttggtgg gtcagcagca gcagcagcag cgcaagcgac atgtttacgg cgaggaacgg 2101 gatcgagaga gggaaagaga aagggaaagg gatcgagaac gggacttgga gcgggaccat 2161 cgcctggtca atggaaacgc agatcccaac gagagctggc agcatctgcg cgtaacgacc 2221 gaaactttgg cggaggtggg caagctggcg gataaggtcc accccaatct gaatctgaat 2281 ctgaatccga acccgaatcc gaaccaaggt cagaacacgg aggtcaatgt ctacagggag 2341 cacaagctgg acgcctggaa gctcgagcgc aactacacgc tggccgtgga gtcgcgccac 2401 ggcatcattg agtacgaagg ctcgcccaga cgcattggag tgaccaccag taatttgggg 2461 ccagtgacgg cggcatcagg ggcatcagcg atagcaggag cagcgacacc agcggacgaa 2521 agcgaaccac cagcagcggt agaagtagca acaacaccac cacaacaaca acaacagcag 2581 cagcagcaac aggtgcccat ggccgccgtt ccgccgctga gctccacggc cacctcgctg 2641 cagaagacgg cggcccgggc agcactggcc gccctggccc agagccaccc ccacaactcc 2701 cacaacatcc tcagctccct gctcccgaac tcatccaacc cgaacccact gaaccccagc 2761 cagatgcaga tccactcgcc gcagcagccc atgcagaact atcccgttcg tccgggcttt 2821 ccacagcgca tcatctcgcc acccaatcgt gagccccgca gcaactcgcc tcctctgcaa 2881 cagcagcagc aacatcagca gcagcagcaa catcagcagc aacaacactt tgccagtctg 2941 atgagcaacc acagcaacaa ctcgaacacc aacaagcagc cgctgagcag cgacaacaac 3001 gccgaggaca ccagcaacga tgtgtccgag attggcacca tatccgacct gaccgctccg 3061 gaggcagtgg gtctgggcct ggccattgga tccgccgccg gcgaggtggc cagccgggcg 3121 gccacgcccc ctcttttggc actcgggcca ccgacagcag tcgcgggcag ctctgccaac 3181 ggaactgcaa cgggaaacgg aagcggaaat ggaaacggaa acggaaccgt aagcggaaat 3241 gcaacagcag cggccaccgg actgggtcca ctgagcctgc acacaaaatc gtcgaccttc 3301 gattacctct acgagttctc ggagacgcgc aaggtgctgg aggagttctt caagtgcccc 3361 tccaccgacg agcagcccat aatggaaaac ggcagcgatg tggacagcat tgacatccag 3421 tacgagttcc acagcaactt tgagcgcgac gacgaggatt tggccgagga ggaggaggcc 3481 gaggacgacg aggagggcga cgacgatgcc gacgaggaga acgacgaggc cgaggatgag 3541 gacgagccgt tgggtcagga tcgcgaccag aactaccgcc agcaggcgcc tcccaccgcc 3601 ggccacgcct ccgagcgact cgtctacggc ggctacggtg gccagcagtc gcagccccag 3661 ctgatttccc agcccctggg cgttggcatg ggcgtgggtg tgggcgtggc acggcgacac 3721 tacagcggca gtccgctgat gcgggacttc gacttcttcc tggactccac cagtcggagc 3781 agcggcgagc gggacggcga ccaggacggg ctcaatcaca accagctgct gagcacgggc 3841 agcggcccag ggggcgtggg agtgggcgtg ggcccgggcg gtggccacaa ctaccgctac 3901 tcaccggaga ccaccgacta cgactccaat tgcggcgatc tggacagtct ctcgggtgag 3961 atgaacggcg gcgtgtcgac ctcctgctcg aactacgcca agtactacgc ctcggccatg 4021 ccagtgctgg aggatgggct ctcctcgggt cacaccagcg acacggagaa caacaacaac 4081 aaccagaaga acaacctgca gcaggcggcg gcccaagggc aacagggtca tcagggtcaa 4141 cagggtcaac cgcagtgccc caccagcctg agcggaagca ccagcatcgg cggcggcatc 4201 tccatgctga tggacatgaa gcgcgtctcg acgaacaaca gtttgaacag catgcacaac 4261 ctgaccacca ccgcctccac cacggacagc aacgggggcg tggccggtca ccacctggtg 4321 gccacgccca gtcccagcaa tgggcaatcg aaggggcagc cgcagagcaa ccagccgaag 4381 acactgtcac tggaccagag tcccagcaac aaccacagca aagtgttcaa gaacattgat 4441 ccggaattgg attcgctcta ctcgattgga gtcttccacc gtccggacac ggtgcagatg 4501 accccaccgc ctcctgctcc ggcgccgcat cgcaagccca acaacaatgg caacggcaat 4561 gccaattcca atgccatggt caacagtaat ggcaccggca acaacgatgt ggatctgctg 4621 cagccgagca gcaagcacac tcacactccg ctggcggcgg ccatcagttc cacgctgcag 4681 cgcagttcac ccaccttggc ggccagcgga aacggaaatg gaatgggaat cggaatcgga 4741 agtggcaagc cccgaagcgc cggcagcaat tgcagcagca ttggcgtgcc gccgcccatt 4801 ccggagagga gcaacctccc caacgtcgcc gccacgcaga gatcaccgtc gccgggcctc 4861 aactcacccg tctggctgtc ccgcaaggag gggctgctgg agtccggctc cgataacaac 4921 cactcgaaga accacagcgc cgacgaggag gacgtggaca ccgatctgga gacggaccgc 4981 ctgctgggcc accagcggct ggacgaccag ggctactacg acgagaacaa gagctgggac 5041 cgcaagccgc gctcgctgct ctcgaagatc tcgcccaagc agcagatgcc gagcaccaag 5101 acgcgcaacg gctacaatgc gctgctcagc tccacgccgg agctgccgcc cccgattcca 5161 cctaagggag gcatgggcaa catgggcaac gggggcaagc tgctggactt ggtcggcggc 5221 atggtgcagc gcagcatatc gcgcagctcc tcggagcact cggacaagtg ctcgcccagc 5281 aaattgggga tgcccctttc catttccggc ggggatgtgg atgtggtggc ctcggcggtg 5341 gcggcggcgg cggtggcggc agcctctgcc acatcgacgg cggctgaagc ggcgctggga 5401 agtccgggga atggaggagg ctcggagaga tcgacggcgg gcggcggcgg cggcggactg 5461 accaatccgg gaggagcggt caagttggtg gagccggaga acgcagccct caacggggga 5521 atgacttctg gagcgggcac aggatcggga gcaggatcgg gatcaggatc tggagcggcc 5581 aatggaaccg cggtggccac caccgccacc gccaacaaca acaacaacgt cggcaacagc 5641 aacagcaaca acagcagcgg cagcggggcc ggcagcaaca gcaacagcgg cgagaaaaaa 5701 gtgaaaaaga gcggcgcagt gctcatcgag ggcgttctct tcagggccaa gtacttgggc 5761 tccacgcagc tggtctgcga aggtcagccc acgaaatcca cgcggatgat gcaggcggag 5821 gaagccgttt ccaggatcaa ggcacccgat ggcgatgtgc agcccagcac cgaggtggat 5881 ctgtttattt cgacggagaa gatcatggtc ctgaacacgg acctcaagga gatcatgatg 5941 gaccacgccc tgcgcaccat ctcctatatc gcggacatcg gggacctggt cgtcctgatg 6001 gcccgacgcc gcttcgttcc ccaggacatc gacgatgccc ccaagccgaa tcgcacgccc 6061 aagatgatat gccatgtgtt cgagagcgac gaggcccagt ttatcgccca gtcgattggc 6121 caggccttcc aggtggccta catggagttc ctcaaggcca acggcatcga ggaccatcgc 6181 ttcgtcaagg agatggacta ccaggaggtg ctcaacagcc aggagatctt cggcgacgag 6241 ctggagatct ttgccaagaa ggagctgcag aaggaggtgg tcgtgccgaa ggccaagggc 6301 gaaatcctgg gcgtggtcat agtggagagt ggctggggct ccatgctgcc gaccgtcgtc 6361 attgccaatc tgatgagctc gggagcagcc gcccggtgcg ggcagctcaa catcggcgac 6421 cagttgatag ccatcaatgg gctgagcctc gtgggactgc cgctctccac ctgccagacg 6481 tacatcaaga acaccaagaa ccagacggtg gtcaagttca cggtggtgcc ctgcgccccc 6541 gtcgtcgagg tgaagatcaa gcggccggag accaagtacc agctcgggtt tagcgtccag 6601 aatggagtga tctgcagtct cctgcgcggc ggcatcgcgg aacggggtgg tgttcgtgtg 6661 ggccatcgca tcatcgagat aaacaaccag agcgtggtgg ctgtgcctca cgagaagatc 6721 gttaacttgc tggccacatc cgtgggagag atactcatga agacgatgcc cacgtccatg 6781 ttccgcctgc tcactggtca ggaaaatccc atatatattt aagccagcgg gagaataata 6841 aacggcgatt attgttaact ataaaaacct aacaaggata ttacgatatt tagtatatat 6901 atacctattc atatagaaag cgaggaaaac agagagagag agagttaata tatgtatgta 6961 tatgcgtgtg tacctatata tataaatata tatatatata tagatatatg ctaaacatat 7021 atattacaca cgagtgtatc gagatttttt ttgtgagtaa actagacaaa gttcgatcga 7081 aggcgagtta agagcagcta ctacgacaaa taagaggaag cgataactaa cacacatggc 7141 acgccttttt gcaaagctta gtaataatag ttaataatgt gtgtgagatc gggccatcgg 7201 ccaggacatg catatgcata taaacatgaa acaatatata tacacatata tatgaacaca 7261 atgacctttt tgcgaaaacg tccttagctt agttgaacgg cgacattagt cagagaatac 7321 tgcagctagt aacagccccc ccaaatatgc ttacccatac ttattgtaaa aaccaaaaat 7381 aaaatccagg aaacacgaac cgaagaccca aacgagattc aagtccacac aggaggcagg 7441 cagctctttt gatatagtat atatataatc cacacactat atagcaccac cccaatatat 7501 ttatataaca aaacagaggg cgcgagaatg gatagcttga aatggatata agaatgaaaa 7561 taggaaatgg atatggaaat ggaaatggat attgtaactg cagcgtttcg ttttctactc 7621 gcacccatag ccgagaattt tgatagttat ttaacggata tagccagatc gtaatgtatg 7681 caaagtgtaa attgaggagc gctttacacc cccacaaata catacatatt cccccataga 7741 ggatttagtt tagcagacac ttacactcac actcacttag acgcttcgat ttcaaccatc 7801 ttcgtccaaa aattgtgcta ctactcgtta aacaagttga tagatataga gagagattag 7861 agaaggataa caggagggca ggagagagag acggagagag gaagggaagg ccggcgaaga 7921 aagagacaga gttagacctc cgttatgagc cataagattt aaaagaagac ggagacgggg 7981 aacagactcg aacagaaaga gacggcaaca ggaacggaaa tagagacaga aataagggca 8041 gacagagagg gagaattgca tttctttgtg tgtatatgta tgtgtaaaat actcgctatt 8101 ggcccaaatg caatccacga acagccggca tcagcagtca ctaagagaac tattattaac 8161 taccagtacg atttaattat gtaacggcaa cagggcattt gcttgatgtt tgtgaattga 8221 acgacttttc ggcctcattt ccgctgcttg gcacgggcca cgcccacgcc caccaaaaat 8281 ccaagaacaa aaaccaaatt aatatacaaa acaagaacat aaaacattaa caactgcttc 8341 agcaaaccaa tgagatgaca tgaaaccgaa acaaatgcat acaagaacta atatttaatg 8401 aattgttttt ttttttttgg tgtacattat ttatatggaa tgtgaaattg cataacaaat 8461 ttaatgaata tattgaatat ttattaaaac gggctaattg catagaaatt atataagaac 8521 gatcataacg atgattattt gtaaaggcga actaaaccca agaaaaccga aaacagaata 8581 aataaataaa agaatatata atcacatgca taacaaaaat ataaaaccaa aaattgagca 8641 taataaacag aaaa