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LOCUS XM_070218975 5634 bp mRNA linear INV 09-DEC-2024 (bi), mRNA. ACCESSION XM_070218975 VERSION XM_070218975.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5634 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5634 /gene="bi" /note="T-box transcription factor bifid; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108060868" CDS 657..3587 /gene="bi" /codon_start=1 /product="optomotor-blind protein" /protein_id="XP_070075076.1" /db_xref="GeneID:108060868" /translation="MRYDVQELLLHQSAEDPFARFANGMAYHPFLQLTQRPTDFSVSS LLTAGSNNNTSGSNTNNNNNSSNSNTNSNNNTNSSNTNNTNSLVAVSPTGGGAQLSPQ SNHSSSNTTTTSNTNNSSSNNNNNNNNNNNNNNTNNNNNNNHTNNNNTNQKQGHHLST TEETPSPAGTPPPPTIVGVSGIQQQQPPPASAAAAAAHPSHHPPHHSPSTGAAAPPSG ATGLPPPTPPHHLQQQQQQQQQQQHQAPPPPPYFPAAALAALAGSPAGPHPGLYPGGG LRFPPHHPGAHPHAHHLGSAYTTAEDVVLASAVAHQLHPAMRPLRALQPEDDGVVDDP KVTLEGKDLWEKFHKLGTEMVITKSGRQMFPQMKFRVSGLDAKAKYILLLDIVAADDY RYKFHNSRWMVAGKADPEMPKRMYIHPDSPTTGEQWMQKVVSFHKLKLTNNISDKHGF VSTTILNSMHKYQPRFHLVRANDILKLPYSTFRTYVFKETEFIAVTAYQNEKITQLKI DNNPFAKGFRDTGAGKREKKQALMSNRGSDSDKLNPTHVSSSRAPLHLGHAGRPPHLH PHAALLDQQQDDDDKLLDVVGPPQSPLLPLSHSLQQMHAHQHSALAAWFNHLAGAGAG ASEHAAAAAANASAEDALRRRLQADADVERDGSDSSCSESVGGSTGGAFRPTSTGSPK EAVGAAAAAAAAGLNPGGGSYPSPNISVGPPIHPSPHLLPYLYPHGLYPPPHLGLLHN PAAAAAMSPAGLNPGLLFNAQLALAAQHPALFGHAYAAAGHTPVSPLQGLKSHRFSPY SLPGSLGSAFDAVTPGSNANRSGDPPGGGLGGGGVVENGPRSLSSSPRPRPASHSPPT RPISMSPTTPPSLMKQPRGGVAQSQHSPSELKSMEKMVNGLEVQHNGSAAAAAAALQL AEEAAQHHQAHHTQAHHPQQQQQPHSHHPQQPPQPHSHHPSSHHQAHHHSQHHGATTG GGDQ" misc_feature <1452..1628 /gene="bi" /note="Optomotor-blind protein N-terminal region; Region: Optomotor-blind; pfam11078" /db_xref="CDD:337907" misc_feature 1650..2213 /gene="bi" /note="DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins; Region: T-box_TBX2_3-like; cd20188" /db_xref="CDD:410314" misc_feature order(1737..1742,1971..1973,1980..1982,2028..2033, 2142..2153,2166..2168,2175..2180,2187..2207) /gene="bi" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:410314" misc_feature <2778..3344 /gene="bi" /note="EBNA-3B; Provisional; Region: PHA03378" /db_xref="CDD:223065" ORIGIN 1 ccggcgtgta gttcgtgtcg tcatcgccgc tctgtcgctt ttgtcgcctg tcggttgcgt 61 ttgtcgtttg ccgtttgccg ttgtcgcttc tgtcgtttgt cgcccgtcgt ttctcgtcgt 121 ttgttgtttc tccctccgtt cgttgttcgt tgatcgtcgt gtcgccatct ccatctcctc 181 catcttcctc ttcatccaaa tctgaatcgc cgatttcctt ttgtgctctt ttttttgcgt 241 tctcctttct ttggtaacaa acaaaacaac cgaaaacaac aaacaaacaa acaacagcta 301 aagcaagcgg acaaactccg aattgcccag tgaagttgcg aagaaacaaa caaaagggaa 361 acaaaaacaa agttcataca ttctcgacgt tttgccgtcg ccaaaacaaa aaaagaaaga 421 gaaattaaac aagaattttt ttgaaacaac aacaagagaa ataaaaagtg ccagtgagtg 481 tgccccggaa aattaaagaa aaaaaaaaca agtacctgta gaacataaaa aaaaaaacaa 541 aaaacacaaa tctaaaacta gaaaagaagg aaatttttaa agagatcccg ttttgagaga 601 tcgccgtggg aaatcctttc tgcatgacgc acttggttgt ttgaaacggt tatgtgatga 661 gatacgacgt ccaggagctg ctacttcatc agtctgctga ggatccattc gccaggttcg 721 ccaatgggat ggcatatcat ccatttctgc agctaacgca acgacccact gacttcagcg 781 tctcctcgct gttgacggcg ggtagcaaca acaataccag cggcagcaac accaacaaca 841 acaacaacag ctcgaattct aataccaatt ccaacaacaa caccaattcg agcaacacca 901 ataacaccaa cagtcttgtg gccgtttcac caacgggtgg tggtgcgcag ttatcgccgc 961 agagcaacca cagcagcagc aacaccacca ccaccagcaa caccaacaac tccagttcca 1021 acaacaacaa caacaataat aataataaca ataacaacaa cacgaataat aataataata 1081 acaaccatac gaataataat aatacaaatc aaaagcaagg acaccacttg agcaccaccg 1141 aagaaacgcc atcgcccgct ggcacaccac caccgcccac aattgttggt gtttcgggga 1201 tacaacaaca acaaccaccg cccgcttcag ctgccgccgc cgccgcccat ccgtcgcacc 1261 acccaccaca tcattccccc agcacgggtg ccgctgcccc gccctctggc gccacgggtc 1321 tgccgccacc cacaccgccg caccacctgc aacaacaaca acagcagcag cagcagcagc 1381 aacaccaggc accaccacca cctccatact ttcccgctgc ggccctggcc gctctagctg 1441 gcagtcccgc aggaccccat ccgggcctct atcccggcgg tggactgcgc ttcccgccgc 1501 accacccggg cgcccacccg cacgcccacc atctgggcag cgcctacacc accgccgagg 1561 acgtcgtcct cgcctcggcc gtcgcccatc agctccatcc ggcgatgcga ccgctccgcg 1621 ctctccagcc cgaggacgat ggcgtcgtcg atgatcccaa ggtcacgctg gagggcaagg 1681 atctgtggga gaagttccac aagctgggca cggaaatggt catcaccaag agcggcagac 1741 aaatgtttcc gcaaatgaaa tttcgtgttt cgggactgga cgccaaggct aaatacatct 1801 tgctactgga catcgtggcg gcggacgatt atcgttataa atttcataat agtcgctgga 1861 tggtggctgg gaaagcggac cccgagatgc caaaacgcat gtatatccat ccagattcgc 1921 ccacaacggg tgagcaatgg atgcagaaag ttgtttcatt tcacaaatta aaattgacca 1981 acaatattag tgataaacat ggatttgtaa gtactacgat cctgaactcg atgcacaagt 2041 accagccgcg ttttcacctg gtgcgagcca acgacatcct gaagctgccg tactccacgt 2101 ttcgcacgta cgtcttcaag gagaccgagt tcatcgccgt cactgcatat cagaatgaga 2161 agataactca attgaaaatc gataacaatc cctttgcgaa gggctttcgt gataccggtg 2221 ctggcaagcg ggaaaagaag caggcgctga tgtcgaatag agggtccgac tcggacaagt 2281 tgaatccgac gcacgtgagc agctcccggg caccgctcca cctgggccac gccggtcgtc 2341 cgccccacct gcatccccat gccgccctgc tcgaccagca gcaggacgac gacgacaagc 2401 tcctggatgt cgtgggtccg ccccagagtc cgctcctccc gctgagccac tcgctgcagc 2461 agatgcacgc ccaccagcac tccgccttgg ctgcctggtt caatcacctg gcgggcgcag 2521 gggccggagc ctctgagcac gcggctgcgg cggcggcgaa tgccagcgcg gaggacgccc 2581 tgcgtcgccg cctgcaggcg gacgccgatg tggagcggga cgggagcgac tcgagctgct 2641 cggagagcgt cggcggcagc accggcggtg ccttcaggcc cacctcgacg ggcagtccca 2701 aggaggcggt gggcgcagca gcggccgccg cagcggctgg cctgaatccc ggcggcggca 2761 gctacccgtc gccgaatata tcggtgggtc cgcccatcca tccgtcgccg catctgttgc 2821 cttacctcta tccccacggc ctctatccgc cgccgcacct gggtctgctg cacaatccgg 2881 cagcggcagc ggctatgagt cccgctggcc tcaatccggg cctcctgttc aacgcccagc 2941 tggcgctggc cgcccagcat ccggcgctgt ttggccacgc ctacgcggcg gcgggacaca 3001 cgcccgtttc gccgctgcag ggcctcaaga gccaccgctt ctcgccgtac agcctgccgg 3061 gcagtttggg ctcggccttc gatgcggtga cccccggctc gaatgccaat cgatcggggg 3121 atccgccggg cggaggcctc ggtggtggcg gagtggtgga gaatgggccg cggagcctga 3181 gctccagccc acggccgcga cccgcctccc actcgccgcc cacccgaccg atttccatgt 3241 cgcccaccac gccgccctcg ctgatgaagc agccacgtgg cggagtggcc cagtcgcagc 3301 actcgccgtc ggagctgaag agcatggaga agatggtcaa cgggctggag gtccaacaca 3361 atggcagtgc ggcggcggca gcggctgcgc ttcagctggc ggaggaggcc gcccagcacc 3421 accaggcgca tcacacccag gcgcaccacc cacagcagca gcagcagccg cactcgcacc 3481 acccacagca gccaccgcag ccgcactcgc accacccgtc gtcgcaccac caggcgcacc 3541 accactcgca gcaccacgga gcgacgacgg gcggcgggga tcagtgacaa ttactggacg 3601 gccgctccga ttgcgaggag ggcggcctgg acttggagct ggagctggag gaggatgtcg 3661 aggagctgga gcaggagcag cacgatcccg acgaccagga cgaggaccgc agctcggtga 3721 tcgatctcga tctggatgtc gacgtctgac cgcgaacgga tgagcgggaa agcctctagc 3781 ctccgaacta cacggccacc gttttcgtgg cttagctggg gttcggcagt gtgtacataa 3841 tataatggat ttggatgcgg atgtggattg gaacctagca tataggcatt tgtagcatat 3901 agcatatagt atatatatat atatatattg tgcatattcc tctccctgct tgaatcactc 3961 tgcctgttct tcgccagctt aagatattct tttttttttt tgcctcgttt ctaagcaagc 4021 ctagccccta gaaatcgctg gcgatccgca ggcaaagtga tggagaggtc tatcggcagt 4081 cggagaaagt taaggggacg tggcaaagga atcgatgaaa ctctttttta gcaccttcaa 4141 gggtcaatgg tcaatacttc aagatcaaat atacaaagca aaaaaaaaaa gaaaaaggaa 4201 gagagataca aggagctcct tctcagacaa atttataagg catataaggc atacgatatg 4261 atgtatcaac cgtaaatgta tattgattgg attggaaata gcaacatcaa agatggcgcc 4321 tctttatata catctagaac acatatatat agtatatata gaagcggata tatatacaga 4381 ttgtaacctt agtaaaacaa acaggagaga aaaacaggag gagagaaaga aaaacaatga 4441 aaagaaaagc ccacaaaaaa aataccacaa aaaacaaaat aaatgcaatt ttttttctta 4501 gtcttaggtg gatgaatttt tttttagtaa acgtaaataa aacctatata catagaaata 4561 tatatacatg aataatttat gtagctctta agtaccaaaa taccgtaaac actcaacaaa 4621 cgaacacaca tgcagcacca ccccccaccc acactcacac ccccacacac aaacacacac 4681 cagtgacgag ttttcttcgt agacgatgga aaatgcttat aaaataaacc tatatacgaa 4741 ctattagagc ttgagttttc ctattttaac cataatattt tttttcgatt tttttttcgt 4801 acttttaagt tctaaaaacc aaagaagaaa gtaatcaatt ttttttcgta tttttatttt 4861 aatttcggaa ccccctgaga tgctaattta gggcacgagt tctgtgtgtg tttatatcat 4921 aaataaaaat atatatacta taaatgtatg gataaaaaaa tataattttt tttattagta 4981 aagtacattt tttttgtgta agatggattg aaaaaaaagg aaaaagaagt gaaaagagtt 5041 gaattcaacg catgttcctc gcataattta agagagagcg acaaagacgc agctaacaca 5101 cacccacaca cacacccccc tctcacacac actcgcacac caggacacca gatacaccca 5161 cacaagtaac gagaaaaaac gagaaaattc acaaaaaaaa aattaaaata aatttctgta 5221 gcaatttgtt ttccttgtaa cccaataata atgcaacatc acaccatcac atcatcaacg 5281 tcattatcat catcacctgc atcatcatca tcatcaaagc attcttatga tggaagagaa 5341 ttaatttttt tctgttggtt agctgttttt tgaaaatgaa ttatacgcaa aagcaatatt 5401 aattatagtt aattaaatgt aaaacaaacg caaacaaccc gaaacaagaa cagcaacagc 5461 aacaacaaga acaacaaatt atgtacgaaa ggatatatat ttaaatatat atatgtatat 5521 ggataaaatt aatgaagaag caacaacacc tcatgtcact gcaattatat ataaaattaa 5581 ttaaacaaca acaaaacaaa ggaaattaaa taaaaattat tactaaaaaa aaaa