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LOCUS XM_070218951 2674 bp mRNA linear INV 09-DEC-2024 (vnd), transcript variant X2, mRNA. ACCESSION XM_070218951 VERSION XM_070218951.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2674 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2674 /gene="vnd" /note="ventral nervous system defective; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058184" CDS 93..1784 /gene="vnd" /codon_start=1 /product="homeobox protein vnd isoform X2" /protein_id="XP_070075052.1" /db_xref="GeneID:108058184" /translation="MEEFLAYFGLFDAKVPSSQRSGFHISDILNLEGSELKNAAAAAA AAAQHGSDLSHHSASESTNGHGGGAHATPSALSPTPAGGSVDEHHNGSGTGGGGSSSD HHSTTEHHAQQPTSNHPQQQQHPHHHHHQQQQQQHPHLQQQHHHPHHHQQAVAPLPLG AHHQSGADAQSHAHANAAAAHLLASHNAAAAAAVAAGQYLPNLPKNFPGSFGDEMSSY HHMAQTMLQHSGRSAWIKENELYGTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSG DYKSYSRSADSDALSVGDALHGSSLTNQGGGGGPSAAHALHNNNNNSTNNNNNNSLKH EALNGASSGHDDSLNEDGIEEDIDDVDDADGSGGGANGSDGLPNKKRKRRVLFTKAQT YELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGL LHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGDGSKLGADCVSVSSVATATAMQNA AAAHHLVALNGAAAYQHAAAAAAGLHAHAHAHAAHAHAHGHAHPHAHAQRAAWWP" misc_feature 1233..1403 /gene="vnd" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" ORIGIN 1 aaacgattta agtaggcttt gccatttcat tgtcagttta attacgtttt tagttggctt 61 aattagtttt cattcagtgg caggctgtta aaatggagga atttcttgca tattttggct 121 tgttcgatgc caaggttccg tcgtcgcagc gctccggctt ccacatatcg gacatcctga 181 atctggaggg ttccgagctg aagaatgccg cagctgccgc tgcagcagcc gcccagcatg 241 gcagtgattt gagccaccac tcggccagtg agtccaccaa tggacacggt ggtggtgctc 301 atgccacgcc ctcggccctc tcgcccacgc ccgccggcgg ttcggtggac gagcaccaca 361 atggcagtgg aacgggtggc ggtggatcct cctccgatca ccacagcacc accgagcatc 421 acgcccagca gccaacgagc aaccacccac agcagcagca acacccgcac caccaccacc 481 accaacagca gcagcagcag cacccgcacc tccagcagca gcaccaccat ccgcatcacc 541 accagcaggc ggtggcccct cttccactgg gggcgcacca ccaaagtggg gcggatgccc 601 agagccacgc ccatgccaac gccgctgccg cccatctgct ggccagccac aatgctgccg 661 ccgctgctgc cgtggccgcc ggccaatacc tgcccaatct gcccaagaac ttccccggca 721 gcttcggcga tgagatgtcc tcgtaccacc acatggccca aacgatgctc cagcactcgg 781 gcaggagtgc gtggatcaag gagaacgagc tatacggaac ccagcagcca gccagtccgg 841 atagcacttc cccggtgaca tcggaggtat cgtacaccta catcggttcc aattgccaga 901 catcgccggc actttcgggc gattacaaga gctacagccg atcggccgat agcgatgccc 961 tatccgtggg cgatgccctg cacggatcat cgctgaccaa tcagggaggt ggcggaggtc 1021 cttcggcggc ccatgccctg cacaataaca acaacaatag cacaaacaat aataacaaca 1081 atagcctaaa gcacgaggcc ctgaatggag caagtagtgg ccacgatgat agcctgaatg 1141 aggatggcat cgaggaggat atcgacgatg tggacgatgc cgatggttcg ggtggcggtg 1201 ccaatggatc cgatggtctg ccgaacaaga agcgcaaacg tcgcgtgctc ttcaccaagg 1261 cgcagaccta cgaattggag cgtcgtttcc gccagcagcg ctacttgagt gccccggaaa 1321 gggagcattt ggccagtttg atacgcctga cgccgacgca ggtgaagatc tggttccaga 1381 atcatcgcta caagacgaag agggcccaga acgagaaggg ctatgagggg catccgggtt 1441 tgcttcatgg tcatgccaca catccgcatc atccaagcgc cttgccatcg ccgcgtcgcg 1501 tcgccgttcc tgtgctggtg aggaatggca aaccatgtct gggtgatggc tccaagctgg 1561 gtgccgattg tgtttccgtc tcatcagtgg ccaccgccac ggccatgcaa aatgcagcgg 1621 ccgctcatca tttggtcgca ctgaacgggg cagccgccta tcaacatgcc gccgcagcgg 1681 ccgccggtct tcatgcccac gcccatgccc atgccgccca tgctcacgcc cacggccacg 1741 cccatccgca tgcccatgcc caacgggcgg cctggtggcc ctaatattgc taggatctga 1801 tcgaatagat gaaccccaaa ccgaaccctt ggtgcaataa tcaaccatca aagaccaggc 1861 ccccaagaaa cccggagaag ccaaaaataa aataaaataa aataaaacga aggaaataaa 1921 ataataattg atacatgcat aaagatcaca actaatttat agtctcacag attccaactt 1981 gagtcattcc tgtacataag ttagtcccaa aaactatata atatatatat atactaaaca 2041 tagtccactt agtcaggggt tacctctata tataaacata aaacccccaa tcctgatcaa 2101 gacaaaaaat gcccatgaca aaggaaaact atatatctag tatctcttgt catggggcat 2161 ttaagtccca taaaataact cccccatttt tactgcacta aagttgataa tacttataaa 2221 aatctagagt tagacaacaa ttttttttat tttttttcta cacctaagtc gaaacttaat 2281 acaaaaattc tgtaaatatt aaaccaaaaa aaaaagaact taagtaaata ggattattcc 2341 aaaaaagaaa aacttataaa cggcaatgca actaaacctg tactatatat acataaatat 2401 tatatttaaa gcaagcgtaa ttagtgttca aattttttag acagaattta atgacccccc 2461 attttttttt ttgtatgaat acatatataa tatagacact tagtcctaac cgatattttt 2521 tttcgtgtgt gtgcgtgtat agcgtgtaaa agaaaaaact ctttgaattt atagcaagta 2581 atgagttcat aaatgttaac aaaagacaga gacggcaagt gtattcaaga cagaaagcaa 2641 agcgaagcaa cactacaaac tgcaaaatac attt