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LOCUS XM_070218948 4665 bp mRNA linear INV 09-DEC-2024 variant X3, mRNA. ACCESSION XM_070218948 VERSION XM_070218948.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4665 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4665 /gene="boi" /note="brother of ihog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055811" CDS 609..3926 /gene="boi" /codon_start=1 /product="interference hedgehog isoform X1" /protein_id="XP_070075049.1" /db_xref="GeneID:108055811" /translation="METGIRLAVVLLLTISIWTIHSQANDSGSSAGTTLGVLFERAPE SAVAPKGDEVVFECELNLKPDRLEWRFRRSGSEPEPYRYLRPSAGYNVTSANEGLAWR LRIYVSAQTAGDYQCVAWYGPGAVASTPARLALVSIALDGGGGQVGSGPRGSIRWSVA PKNCLLIRCGSVVSNPPAIWSFYRNGKKLPQSELLPGAAGALVLDTVTAKDAGNYSCV ATNSITGDELRLPQTIELRVDYTDRTPPYFLQRPPTEYSARPGETVVLECPGVGSPRP RVIWSSPNVVGIYNNRSKILPYGLQITDLKPEDQGSYICMLDNGIAPPIDHTIKLSVL QRPTILRGPAATLINESNPLVLECSASGNPQPDIYWLINGEEATQDPEAVVDNRSLQL RRVQKRHAGVVQCFAKNILGETSKGNILRVNPLEITGEDEEPLGGVPMWPVHESNGGM GSSSTPSGGSKNKGGRRKYKASMVPPSKPNVTRLSDESVMLRWSVPQNSGLQITFFKV QYRRLGDGKNRRENWQTTSDNIPYGNSYGSGSGSGSNNHWRQRNRDRDYEMGNPPKNF TSSVTGLTAGKYYRFRIVAVYSNNDNKEGNTSVKFFLQSGAARSNLPVPELREVEPLS EATVVLHWSLMASEKSEDIDGYYAYYRPADSAAEYLKATVDGGRSRSFKIDLLRPGTA YEFKLQSFNSDAASEFSAIRQARTKKTTDQSASSASSTPLPGHKSADQQPNSMYPVIA GAAGGGLLLLVASLMVCMCLRRRENQQPEDENKPQLEHIQADFVTSAVLGVGGHHKSG DVRRLNGVIPRMNITPNPLAQETASDKNRNVMELRFLPPLANGNGNGNGNCIALKPET ETEPQPNEREQEQDEEDDLGLPAVASSSCETLEACDAAIKLNLHQDSALEAPSKPLPP LPKKPSNSAGQTNGLHHAQPYHPPGTPTLMHKRLDHYHQQQAPPVPPHSAYYQQAPTH SHAHQPSPMMERSARGHQQQHHLEDNGTPTPSRIPSLRRQRRTSGSQPVHNSHSNLNL NLSHHNNNNLPSHHQHLHHHPGHPGHPNGLVGIPIVPGSPRVQRSPMPSRAMIKRTRL GSHTDNISSGSLNSIEV" misc_feature 735..1007 /gene="boi" /note="Immunoglobulin like; Region: IG_like; smart00410" /db_xref="CDD:214653" misc_feature 1101..1283 /gene="boi" /note="Immunoglobulin domain; Region: Ig; cd00096" /db_xref="CDD:409353" misc_feature 1101..1115 /gene="boi" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409353" misc_feature 1143..1157 /gene="boi" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409353" misc_feature 1206..1220 /gene="boi" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409353" misc_feature 1248..1265 /gene="boi" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409353" misc_feature 1365..1607 /gene="boi" /note="Immunoglobulin like; Region: IG_like; smart00410" /db_xref="CDD:214653" misc_feature 1398..1412 /gene="boi" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409570" misc_feature 1437..1451 /gene="boi" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409570" misc_feature 1500..1514 /gene="boi" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409570" misc_feature 1542..1559 /gene="boi" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409570" misc_feature 1614..1835 /gene="boi" /note="Immunoglobulin domain; Region: Ig_3; pfam13927" /db_xref="CDD:464046" misc_feature <1992..>2810 /gene="boi" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature 2463..2726 /gene="boi" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" misc_feature order(2691..2696,2700..2705) /gene="boi" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature <3375..3635 /gene="boi" /note="N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins; Region: KLF1_2_4_N; cl41729" /db_xref="CDD:425360" polyA_site 4665 /gene="boi" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acaagtgcaa aagtcttggg aataattgcc agcgagagag agcgagcaaa gtgcgtgtgc 61 caagtttgtt tttattttta aaacggcaac cggctaaaaa ggcagcggcg tcgcgtagaa 121 aacacctaat aactataaat tatggggctc cctcccggtg ggatctcaat agtttccgaa 181 tgtttgtcaa aaagcgggga aatggaaatg gatccccaga catacttata tcgaatgtcg 241 gacagtcggc ggatgtgact aagagccacc aaattcaatt taacccgatg cgatatgcga 301 tgccaatccg tgttctcttc gatgggaaaa atcgcaagaa tgccgcctca agtgatcaaa 361 atctaatcaa aatatttacc gttcgtttag cgtgcgacga gaagaggaga ggagattgga 421 gagaagtacg tacttacagc gaggatttac ctgcccttcg aaatcgcaga aaagccaaca 481 gttgacagca gcagaatgca gtcctaaggc ggcagatcag atccgactgg aaagagacgg 541 ggataccgct gaggaaagag acggagggac tagcgagtga caaagagtac aaaagaccca 601 cattagagat ggaaactgga atccggctag ctgtggtcct cctactgacc atcagtatct 661 ggacaatcca cagccaagcc aacgacagtg gttcctccgc gggaaccacc ttgggcgtct 721 tgttcgagcg ggctcccgag tcggcggtgg ctcccaaggg cgacgaggtg gtcttcgagt 781 gcgaactgaa tctcaagccg gatcgcctgg agtggcggtt cagacgcagt ggctccgagc 841 ccgaaccgta tagatatttg aggccctcgg cgggctacaa tgtgacgagc gccaacgagg 901 gtctggcctg gagactgcgg atctatgtga gtgcccagac ggcaggtgac taccagtgcg 961 tggcctggta tggtcccggt gccgtggcct ccacgcccgc ccgtctggcc cttgtctcga 1021 tcgccctgga cggtggtggc ggtcaggtgg gatcaggccc tcgaggctcc atacgctgga 1081 gtgtggcgcc caagaactgc ctgctcatcc gctgtggcag cgtggtatcc aatcccccgg 1141 ccatctggag tttctaccgg aatggcaaga agctgccgca gtcggagttg cttcccggag 1201 cggcgggagc gttggttctg gacacggtca ccgccaagga tgcgggcaac tactcgtgcg 1261 tggccacaaa ttctataaca ggcgatgagc taaggctgcc gcagaccatt gaactgaggg 1321 tggactacac ggaccggacg ccgccgtact tcctgcaacg tccgcccacc gagtactcgg 1381 ctcgtcccgg ggagacagtg gtgctcgagt gtcctggcgt cggatctccg cggccccgag 1441 tcatctggag tagtcccaat gtggtgggga tctacaataa caggagcaag attctgccct 1501 acggcctcca gatcaccgac ctgaagcccg aggatcaggg atcctacatc tgcatgctgg 1561 acaatggcat tgcgccgccc atagatcaca ccatcaagct gagtgtcctg cagcgtccca 1621 cgattctgag aggtcctgct gccacgctga tcaacgagag taatcccctg gtgttggagt 1681 gctccgcctc ggggaatccg cagccggata tctactggct catcaacggc gaggaggcca 1741 cccaggatcc ggaggccgtg gtggataacc ggagtctgca gctgaggagg gtgcagaagc 1801 gccatgccgg agtggttcag tgcttcgcga agaacattct gggcgagacc agcaagggca 1861 acattctgcg cgtgaatccc ctggaaatca ctggcgagga tgaggaacca cttggcggag 1921 ttcccatgtg gccggttcat gagtctaacg gtggaatggg atcctcgtcg acgccatctg 1981 gtggttccaa aaacaaggga ggccggagga agtacaaagc cagcatggtg cctccgtcaa 2041 agcccaatgt cacccgcctg tcggacgagt ccgtgatgct ccgctggagc gttccgcaga 2101 actcgggact gcagatcacc ttcttcaagg tgcagtaccg tcgtctgggc gacgggaaga 2161 atcggcggga gaactggcag acaaccagtg ataatatccc ctatggaaat agctacggat 2221 cgggatccgg atcgggaagc aataaccact ggcgacagcg caacagggac agggactacg 2281 agatgggcaa tccgcccaag aacttcacct cctcggtcac cggactgact gccgggaagt 2341 actatcgctt ccggatcgtg gcggtctatt cgaacaacga caacaaggag ggcaacacct 2401 cggtcaagtt cttcctgcaa agcggagcgg ccaggtcgaa tctgccggtt cccgagctcc 2461 gcgaggtgga gccgctgtcc gaggccaccg tggtgctcca ctggtcgctg atggcctctg 2521 aaaagagtga ggatatcgat ggctattatg cctactacag acccgccgat tcggcggcgg 2581 aatatctaaa ggccaccgtg gacgggggaa gaagcaggag cttcaagata gatctcctgc 2641 gacccggaac cgcctacgag ttcaagctgc agtcgttcaa ttccgacgca gcctccgagt 2701 tcagtgcgat aagacaggcg aggaccaaaa aaaccactga tcaaagtgct tcctctgctt 2761 catccacccc actgcctggc cataaatcag cggatcagca gccgaactcc atgtatccag 2821 tgattgcagg agctgccggc gggggactgc tgctcctcgt cgcctccttg atggtctgca 2881 tgtgtctcag gcgacgggag aaccaacaac cagaggatga gaacaaaccg caattggagc 2941 acatccaagc ggactttgtg acctccgccg ttctgggagt gggtggccat cacaagagcg 3001 gcgatgtgag gcgtttgaac ggagtgattc cccggatgaa catcaccccc aatccgctgg 3061 cccaggaaac ggcctccgat aagaaccgca acgtgatgga gctgcgtttc ctgccgccgc 3121 tggcaaacgg aaacggaaat gggaatggta actgcattgc attaaaaccg gaaacggaaa 3181 ctgagccaca gccgaacgaa agagagcagg agcaggacga agaggacgac ctgggactgc 3241 cggcggtggc ctcctcctcc tgcgagaccc tggaggcctg cgacgcggcc atcaagctga 3301 atctccacca ggattccgcc ctggaggcgc ccagcaaacc acttccaccg ctgcccaaga 3361 agccatcgaa tagcgctggc caaacgaatg gcctgcatca tgcgcagccg tatcatccgc 3421 ccggaacgcc cacgctgatg cacaagcgac tggaccacta ccaccagcag caggcgcctc 3481 cggtgcctcc gcactccgcc tactaccagc aggcgcccac ccacagccac gcccaccagc 3541 cgtcgcccat gatggagcgc agtgctcggg gtcaccagca gcagcatcat ttagaggaca 3601 acggcacgcc cacgccctcg aggattccct cgctgaggcg ccagcgaaga acctcgggca 3661 gccagccggt gcacaacagc cacagcaatc tcaacctgaa cctgagccac cacaacaaca 3721 ataacctgcc atcgcaccac cagcatctgc accaccaccc aggtcaccct ggtcatccga 3781 atggcctggt cgggataccc attgtgccgg gcagtccgcg ggtccagaga tctccgatgc 3841 ccagcagggc gatgatcaag aggacgcgac tgggcagcca cacggacaac atctcctcgg 3901 gcagcctgaa cagtattgag gtgtgattga ggatgattgg agtatcaaga gcatcggaag 3961 cgaaaacagt tcccctacag acaaacagac agcttcaact aggcttaatc aaccgaaaat 4021 cgacgtgtat tattatgctt atccatagaa acgggccggc agagcagtcg aatgcactcg 4081 aatactagtt tttaagcagt cgataaaaat ttggatagat gaagtcttga gctagaacca 4141 aaaattgtac taaatttgaa gatttcattt catttgctaa gaaaaataat ggaagcttag 4201 acgttgaacg ctaaagctgc ttgattttga tttgtttaaa aatttcctat tcaatttgat 4261 tggaatgaga agaagaagaa ttattaataa tatacttttt ttcctgtttc tgccggccag 4321 atagtcagta gaattattaa tttgtatttt ttttttaccg attgattagt gcatccccca 4381 ggggtcccaa attgcaactc gactaagccc tgtagcatag tgttatttat ttattacagt 4441 gtaagcgtca ccgactcgaa ttgattagtt caatcaggat aagcactcta actagcagcc 4501 taattagctc gtaaggcaaa ccaactatct agcattaaag taagacactt taaaatgtga 4561 ctaatatccc gacattgtag cgtaaaggaa aagcatccta aactattttt aagttcatag 4621 acagctgagt tctaaacgta tttttgccaa ttttgaaatt aaaaa