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LOCUS XM_070218947 4411 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_070218947 VERSION XM_070218947.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4411 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4411 /gene="boi" /note="brother of ihog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055811" CDS 355..3672 /gene="boi" /codon_start=1 /product="interference hedgehog isoform X1" /protein_id="XP_070075048.1" /db_xref="GeneID:108055811" /translation="METGIRLAVVLLLTISIWTIHSQANDSGSSAGTTLGVLFERAPE SAVAPKGDEVVFECELNLKPDRLEWRFRRSGSEPEPYRYLRPSAGYNVTSANEGLAWR LRIYVSAQTAGDYQCVAWYGPGAVASTPARLALVSIALDGGGGQVGSGPRGSIRWSVA PKNCLLIRCGSVVSNPPAIWSFYRNGKKLPQSELLPGAAGALVLDTVTAKDAGNYSCV ATNSITGDELRLPQTIELRVDYTDRTPPYFLQRPPTEYSARPGETVVLECPGVGSPRP RVIWSSPNVVGIYNNRSKILPYGLQITDLKPEDQGSYICMLDNGIAPPIDHTIKLSVL QRPTILRGPAATLINESNPLVLECSASGNPQPDIYWLINGEEATQDPEAVVDNRSLQL RRVQKRHAGVVQCFAKNILGETSKGNILRVNPLEITGEDEEPLGGVPMWPVHESNGGM GSSSTPSGGSKNKGGRRKYKASMVPPSKPNVTRLSDESVMLRWSVPQNSGLQITFFKV QYRRLGDGKNRRENWQTTSDNIPYGNSYGSGSGSGSNNHWRQRNRDRDYEMGNPPKNF TSSVTGLTAGKYYRFRIVAVYSNNDNKEGNTSVKFFLQSGAARSNLPVPELREVEPLS EATVVLHWSLMASEKSEDIDGYYAYYRPADSAAEYLKATVDGGRSRSFKIDLLRPGTA YEFKLQSFNSDAASEFSAIRQARTKKTTDQSASSASSTPLPGHKSADQQPNSMYPVIA GAAGGGLLLLVASLMVCMCLRRRENQQPEDENKPQLEHIQADFVTSAVLGVGGHHKSG DVRRLNGVIPRMNITPNPLAQETASDKNRNVMELRFLPPLANGNGNGNGNCIALKPET ETEPQPNEREQEQDEEDDLGLPAVASSSCETLEACDAAIKLNLHQDSALEAPSKPLPP LPKKPSNSAGQTNGLHHAQPYHPPGTPTLMHKRLDHYHQQQAPPVPPHSAYYQQAPTH SHAHQPSPMMERSARGHQQQHHLEDNGTPTPSRIPSLRRQRRTSGSQPVHNSHSNLNL NLSHHNNNNLPSHHQHLHHHPGHPGHPNGLVGIPIVPGSPRVQRSPMPSRAMIKRTRL GSHTDNISSGSLNSIEV" misc_feature 481..753 /gene="boi" /note="Immunoglobulin like; Region: IG_like; smart00410" /db_xref="CDD:214653" misc_feature 847..1029 /gene="boi" /note="Immunoglobulin domain; Region: Ig; cd00096" /db_xref="CDD:409353" misc_feature 847..861 /gene="boi" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409353" misc_feature 889..903 /gene="boi" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409353" misc_feature 952..966 /gene="boi" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409353" misc_feature 994..1011 /gene="boi" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409353" misc_feature 1111..1353 /gene="boi" /note="Immunoglobulin like; Region: IG_like; smart00410" /db_xref="CDD:214653" misc_feature 1144..1158 /gene="boi" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409570" misc_feature 1183..1197 /gene="boi" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409570" misc_feature 1246..1260 /gene="boi" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409570" misc_feature 1288..1305 /gene="boi" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409570" misc_feature 1360..1581 /gene="boi" /note="Immunoglobulin domain; Region: Ig_3; pfam13927" /db_xref="CDD:464046" misc_feature <1738..>2556 /gene="boi" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature 2209..2472 /gene="boi" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" misc_feature order(2437..2442,2446..2451) /gene="boi" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature <3121..3381 /gene="boi" /note="N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins; Region: KLF1_2_4_N; cl41729" /db_xref="CDD:425360" polyA_site 4411 /gene="boi" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccgaacaaga aagacgtgtg tgcggagaaa gagagctgcg ccctcgaact gaaagccata 61 gtgtaaccct tggcgcccgc gtcgtgctaa ttacctttaa tatttaccct ttttttttgg 121 ctgtttcaac aaccctcgtg cgacgagaag aggagaggag attggagaga agtacgtact 181 tacagcgagg atttacctgc ccttcgaaat cgcagaaaag ccaacagttg acagcagcag 241 aatgcagtcc taaggcggca gatcagatcc gactggaaag agacggggat accgctgagg 301 aaagagacgg agggactagc gagtgacaaa gagtacaaaa gacccacatt agagatggaa 361 actggaatcc ggctagctgt ggtcctccta ctgaccatca gtatctggac aatccacagc 421 caagccaacg acagtggttc ctccgcggga accaccttgg gcgtcttgtt cgagcgggct 481 cccgagtcgg cggtggctcc caagggcgac gaggtggtct tcgagtgcga actgaatctc 541 aagccggatc gcctggagtg gcggttcaga cgcagtggct ccgagcccga accgtataga 601 tatttgaggc cctcggcggg ctacaatgtg acgagcgcca acgagggtct ggcctggaga 661 ctgcggatct atgtgagtgc ccagacggca ggtgactacc agtgcgtggc ctggtatggt 721 cccggtgccg tggcctccac gcccgcccgt ctggcccttg tctcgatcgc cctggacggt 781 ggtggcggtc aggtgggatc aggccctcga ggctccatac gctggagtgt ggcgcccaag 841 aactgcctgc tcatccgctg tggcagcgtg gtatccaatc ccccggccat ctggagtttc 901 taccggaatg gcaagaagct gccgcagtcg gagttgcttc ccggagcggc gggagcgttg 961 gttctggaca cggtcaccgc caaggatgcg ggcaactact cgtgcgtggc cacaaattct 1021 ataacaggcg atgagctaag gctgccgcag accattgaac tgagggtgga ctacacggac 1081 cggacgccgc cgtacttcct gcaacgtccg cccaccgagt actcggctcg tcccggggag 1141 acagtggtgc tcgagtgtcc tggcgtcgga tctccgcggc cccgagtcat ctggagtagt 1201 cccaatgtgg tggggatcta caataacagg agcaagattc tgccctacgg cctccagatc 1261 accgacctga agcccgagga tcagggatcc tacatctgca tgctggacaa tggcattgcg 1321 ccgcccatag atcacaccat caagctgagt gtcctgcagc gtcccacgat tctgagaggt 1381 cctgctgcca cgctgatcaa cgagagtaat cccctggtgt tggagtgctc cgcctcgggg 1441 aatccgcagc cggatatcta ctggctcatc aacggcgagg aggccaccca ggatccggag 1501 gccgtggtgg ataaccggag tctgcagctg aggagggtgc agaagcgcca tgccggagtg 1561 gttcagtgct tcgcgaagaa cattctgggc gagaccagca agggcaacat tctgcgcgtg 1621 aatcccctgg aaatcactgg cgaggatgag gaaccacttg gcggagttcc catgtggccg 1681 gttcatgagt ctaacggtgg aatgggatcc tcgtcgacgc catctggtgg ttccaaaaac 1741 aagggaggcc ggaggaagta caaagccagc atggtgcctc cgtcaaagcc caatgtcacc 1801 cgcctgtcgg acgagtccgt gatgctccgc tggagcgttc cgcagaactc gggactgcag 1861 atcaccttct tcaaggtgca gtaccgtcgt ctgggcgacg ggaagaatcg gcgggagaac 1921 tggcagacaa ccagtgataa tatcccctat ggaaatagct acggatcggg atccggatcg 1981 ggaagcaata accactggcg acagcgcaac agggacaggg actacgagat gggcaatccg 2041 cccaagaact tcacctcctc ggtcaccgga ctgactgccg ggaagtacta tcgcttccgg 2101 atcgtggcgg tctattcgaa caacgacaac aaggagggca acacctcggt caagttcttc 2161 ctgcaaagcg gagcggccag gtcgaatctg ccggttcccg agctccgcga ggtggagccg 2221 ctgtccgagg ccaccgtggt gctccactgg tcgctgatgg cctctgaaaa gagtgaggat 2281 atcgatggct attatgccta ctacagaccc gccgattcgg cggcggaata tctaaaggcc 2341 accgtggacg ggggaagaag caggagcttc aagatagatc tcctgcgacc cggaaccgcc 2401 tacgagttca agctgcagtc gttcaattcc gacgcagcct ccgagttcag tgcgataaga 2461 caggcgagga ccaaaaaaac cactgatcaa agtgcttcct ctgcttcatc caccccactg 2521 cctggccata aatcagcgga tcagcagccg aactccatgt atccagtgat tgcaggagct 2581 gccggcgggg gactgctgct cctcgtcgcc tccttgatgg tctgcatgtg tctcaggcga 2641 cgggagaacc aacaaccaga ggatgagaac aaaccgcaat tggagcacat ccaagcggac 2701 tttgtgacct ccgccgttct gggagtgggt ggccatcaca agagcggcga tgtgaggcgt 2761 ttgaacggag tgattccccg gatgaacatc acccccaatc cgctggccca ggaaacggcc 2821 tccgataaga accgcaacgt gatggagctg cgtttcctgc cgccgctggc aaacggaaac 2881 ggaaatggga atggtaactg cattgcatta aaaccggaaa cggaaactga gccacagccg 2941 aacgaaagag agcaggagca ggacgaagag gacgacctgg gactgccggc ggtggcctcc 3001 tcctcctgcg agaccctgga ggcctgcgac gcggccatca agctgaatct ccaccaggat 3061 tccgccctgg aggcgcccag caaaccactt ccaccgctgc ccaagaagcc atcgaatagc 3121 gctggccaaa cgaatggcct gcatcatgcg cagccgtatc atccgcccgg aacgcccacg 3181 ctgatgcaca agcgactgga ccactaccac cagcagcagg cgcctccggt gcctccgcac 3241 tccgcctact accagcaggc gcccacccac agccacgccc accagccgtc gcccatgatg 3301 gagcgcagtg ctcggggtca ccagcagcag catcatttag aggacaacgg cacgcccacg 3361 ccctcgagga ttccctcgct gaggcgccag cgaagaacct cgggcagcca gccggtgcac 3421 aacagccaca gcaatctcaa cctgaacctg agccaccaca acaacaataa cctgccatcg 3481 caccaccagc atctgcacca ccacccaggt caccctggtc atccgaatgg cctggtcggg 3541 atacccattg tgccgggcag tccgcgggtc cagagatctc cgatgcccag cagggcgatg 3601 atcaagagga cgcgactggg cagccacacg gacaacatct cctcgggcag cctgaacagt 3661 attgaggtgt gattgaggat gattggagta tcaagagcat cggaagcgaa aacagttccc 3721 ctacagacaa acagacagct tcaactaggc ttaatcaacc gaaaatcgac gtgtattatt 3781 atgcttatcc atagaaacgg gccggcagag cagtcgaatg cactcgaata ctagttttta 3841 agcagtcgat aaaaatttgg atagatgaag tcttgagcta gaaccaaaaa ttgtactaaa 3901 tttgaagatt tcatttcatt tgctaagaaa aataatggaa gcttagacgt tgaacgctaa 3961 agctgcttga ttttgatttg tttaaaaatt tcctattcaa tttgattgga atgagaagaa 4021 gaagaattat taataatata ctttttttcc tgtttctgcc ggccagatag tcagtagaat 4081 tattaatttg tatttttttt ttaccgattg attagtgcat cccccagggg tcccaaattg 4141 caactcgact aagccctgta gcatagtgtt atttatttat tacagtgtaa gcgtcaccga 4201 ctcgaattga ttagttcaat caggataagc actctaacta gcagcctaat tagctcgtaa 4261 ggcaaaccaa ctatctagca ttaaagtaag acactttaaa atgtgactaa tatcccgaca 4321 ttgtagcgta aaggaaaagc atcctaaact atttttaagt tcatagacag ctgagttcta 4381 aacgtatttt tgccaatttt gaaattaaaa a