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LOCUS XM_070218946 4774 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_070218946 VERSION XM_070218946.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4774 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4774 /gene="boi" /note="brother of ihog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055811" CDS 718..4035 /gene="boi" /codon_start=1 /product="interference hedgehog isoform X1" /protein_id="XP_070075047.1" /db_xref="GeneID:108055811" /translation="METGIRLAVVLLLTISIWTIHSQANDSGSSAGTTLGVLFERAPE SAVAPKGDEVVFECELNLKPDRLEWRFRRSGSEPEPYRYLRPSAGYNVTSANEGLAWR LRIYVSAQTAGDYQCVAWYGPGAVASTPARLALVSIALDGGGGQVGSGPRGSIRWSVA PKNCLLIRCGSVVSNPPAIWSFYRNGKKLPQSELLPGAAGALVLDTVTAKDAGNYSCV ATNSITGDELRLPQTIELRVDYTDRTPPYFLQRPPTEYSARPGETVVLECPGVGSPRP RVIWSSPNVVGIYNNRSKILPYGLQITDLKPEDQGSYICMLDNGIAPPIDHTIKLSVL QRPTILRGPAATLINESNPLVLECSASGNPQPDIYWLINGEEATQDPEAVVDNRSLQL RRVQKRHAGVVQCFAKNILGETSKGNILRVNPLEITGEDEEPLGGVPMWPVHESNGGM GSSSTPSGGSKNKGGRRKYKASMVPPSKPNVTRLSDESVMLRWSVPQNSGLQITFFKV QYRRLGDGKNRRENWQTTSDNIPYGNSYGSGSGSGSNNHWRQRNRDRDYEMGNPPKNF TSSVTGLTAGKYYRFRIVAVYSNNDNKEGNTSVKFFLQSGAARSNLPVPELREVEPLS EATVVLHWSLMASEKSEDIDGYYAYYRPADSAAEYLKATVDGGRSRSFKIDLLRPGTA YEFKLQSFNSDAASEFSAIRQARTKKTTDQSASSASSTPLPGHKSADQQPNSMYPVIA GAAGGGLLLLVASLMVCMCLRRRENQQPEDENKPQLEHIQADFVTSAVLGVGGHHKSG DVRRLNGVIPRMNITPNPLAQETASDKNRNVMELRFLPPLANGNGNGNGNCIALKPET ETEPQPNEREQEQDEEDDLGLPAVASSSCETLEACDAAIKLNLHQDSALEAPSKPLPP LPKKPSNSAGQTNGLHHAQPYHPPGTPTLMHKRLDHYHQQQAPPVPPHSAYYQQAPTH SHAHQPSPMMERSARGHQQQHHLEDNGTPTPSRIPSLRRQRRTSGSQPVHNSHSNLNL NLSHHNNNNLPSHHQHLHHHPGHPGHPNGLVGIPIVPGSPRVQRSPMPSRAMIKRTRL GSHTDNISSGSLNSIEV" misc_feature 844..1116 /gene="boi" /note="Immunoglobulin like; Region: IG_like; smart00410" /db_xref="CDD:214653" misc_feature 1210..1392 /gene="boi" /note="Immunoglobulin domain; Region: Ig; cd00096" /db_xref="CDD:409353" misc_feature 1210..1224 /gene="boi" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409353" misc_feature 1252..1266 /gene="boi" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409353" misc_feature 1315..1329 /gene="boi" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409353" misc_feature 1357..1374 /gene="boi" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409353" misc_feature 1474..1716 /gene="boi" /note="Immunoglobulin like; Region: IG_like; smart00410" /db_xref="CDD:214653" misc_feature 1507..1521 /gene="boi" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409570" misc_feature 1546..1560 /gene="boi" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409570" misc_feature 1609..1623 /gene="boi" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409570" misc_feature 1651..1668 /gene="boi" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409570" misc_feature 1723..1944 /gene="boi" /note="Immunoglobulin domain; Region: Ig_3; pfam13927" /db_xref="CDD:464046" misc_feature <2101..>2919 /gene="boi" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature 2572..2835 /gene="boi" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" misc_feature order(2800..2805,2809..2814) /gene="boi" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature <3484..3744 /gene="boi" /note="N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins; Region: KLF1_2_4_N; cl41729" /db_xref="CDD:425360" polyA_site 4774 /gene="boi" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acaagtgcaa aagtcttggg aataattgcc agcgagagag agcgagcaaa gtgcgtgtgc 61 caagtttgtt tttattttta aaacggcaac cggctaaaaa ggcagcggcg tcgcgtagaa 121 aacacctaat aactataaat tatggggctc cctcccggtg ggatctcaat agtttccgaa 181 tgtttgtcaa aaagcgggga aatggaaatg gatccccaga catacttata tcgaatgtcg 241 gacagtcggc ggatgtgact aagagccacc aaattcaatt taacccgatg cgatatgcga 301 tgccaatccg tgttctcgtg tgtatatttg aaaggcttta aaaatgccat aacattttaa 361 taggtttctt ttatttggtt tgcctttcct ctcggctcgc attgttcttt tactacttgt 421 ttttagttcg atgggaaaaa tcgcaagaat gccgcctcaa gtgatcaaaa tctaatcaaa 481 atatttaccg ttcgtttagc gtgcgacgag aagaggagag gagattggag agaagtacgt 541 acttacagcg aggatttacc tgcccttcga aatcgcagaa aagccaacag ttgacagcag 601 cagaatgcag tcctaaggcg gcagatcaga tccgactgga aagagacggg gataccgctg 661 aggaaagaga cggagggact agcgagtgac aaagagtaca aaagacccac attagagatg 721 gaaactggaa tccggctagc tgtggtcctc ctactgacca tcagtatctg gacaatccac 781 agccaagcca acgacagtgg ttcctccgcg ggaaccacct tgggcgtctt gttcgagcgg 841 gctcccgagt cggcggtggc tcccaagggc gacgaggtgg tcttcgagtg cgaactgaat 901 ctcaagccgg atcgcctgga gtggcggttc agacgcagtg gctccgagcc cgaaccgtat 961 agatatttga ggccctcggc gggctacaat gtgacgagcg ccaacgaggg tctggcctgg 1021 agactgcgga tctatgtgag tgcccagacg gcaggtgact accagtgcgt ggcctggtat 1081 ggtcccggtg ccgtggcctc cacgcccgcc cgtctggccc ttgtctcgat cgccctggac 1141 ggtggtggcg gtcaggtggg atcaggccct cgaggctcca tacgctggag tgtggcgccc 1201 aagaactgcc tgctcatccg ctgtggcagc gtggtatcca atcccccggc catctggagt 1261 ttctaccgga atggcaagaa gctgccgcag tcggagttgc ttcccggagc ggcgggagcg 1321 ttggttctgg acacggtcac cgccaaggat gcgggcaact actcgtgcgt ggccacaaat 1381 tctataacag gcgatgagct aaggctgccg cagaccattg aactgagggt ggactacacg 1441 gaccggacgc cgccgtactt cctgcaacgt ccgcccaccg agtactcggc tcgtcccggg 1501 gagacagtgg tgctcgagtg tcctggcgtc ggatctccgc ggccccgagt catctggagt 1561 agtcccaatg tggtggggat ctacaataac aggagcaaga ttctgcccta cggcctccag 1621 atcaccgacc tgaagcccga ggatcaggga tcctacatct gcatgctgga caatggcatt 1681 gcgccgccca tagatcacac catcaagctg agtgtcctgc agcgtcccac gattctgaga 1741 ggtcctgctg ccacgctgat caacgagagt aatcccctgg tgttggagtg ctccgcctcg 1801 gggaatccgc agccggatat ctactggctc atcaacggcg aggaggccac ccaggatccg 1861 gaggccgtgg tggataaccg gagtctgcag ctgaggaggg tgcagaagcg ccatgccgga 1921 gtggttcagt gcttcgcgaa gaacattctg ggcgagacca gcaagggcaa cattctgcgc 1981 gtgaatcccc tggaaatcac tggcgaggat gaggaaccac ttggcggagt tcccatgtgg 2041 ccggttcatg agtctaacgg tggaatggga tcctcgtcga cgccatctgg tggttccaaa 2101 aacaagggag gccggaggaa gtacaaagcc agcatggtgc ctccgtcaaa gcccaatgtc 2161 acccgcctgt cggacgagtc cgtgatgctc cgctggagcg ttccgcagaa ctcgggactg 2221 cagatcacct tcttcaaggt gcagtaccgt cgtctgggcg acgggaagaa tcggcgggag 2281 aactggcaga caaccagtga taatatcccc tatggaaata gctacggatc gggatccgga 2341 tcgggaagca ataaccactg gcgacagcgc aacagggaca gggactacga gatgggcaat 2401 ccgcccaaga acttcacctc ctcggtcacc ggactgactg ccgggaagta ctatcgcttc 2461 cggatcgtgg cggtctattc gaacaacgac aacaaggagg gcaacacctc ggtcaagttc 2521 ttcctgcaaa gcggagcggc caggtcgaat ctgccggttc ccgagctccg cgaggtggag 2581 ccgctgtccg aggccaccgt ggtgctccac tggtcgctga tggcctctga aaagagtgag 2641 gatatcgatg gctattatgc ctactacaga cccgccgatt cggcggcgga atatctaaag 2701 gccaccgtgg acgggggaag aagcaggagc ttcaagatag atctcctgcg acccggaacc 2761 gcctacgagt tcaagctgca gtcgttcaat tccgacgcag cctccgagtt cagtgcgata 2821 agacaggcga ggaccaaaaa aaccactgat caaagtgctt cctctgcttc atccacccca 2881 ctgcctggcc ataaatcagc ggatcagcag ccgaactcca tgtatccagt gattgcagga 2941 gctgccggcg ggggactgct gctcctcgtc gcctccttga tggtctgcat gtgtctcagg 3001 cgacgggaga accaacaacc agaggatgag aacaaaccgc aattggagca catccaagcg 3061 gactttgtga cctccgccgt tctgggagtg ggtggccatc acaagagcgg cgatgtgagg 3121 cgtttgaacg gagtgattcc ccggatgaac atcaccccca atccgctggc ccaggaaacg 3181 gcctccgata agaaccgcaa cgtgatggag ctgcgtttcc tgccgccgct ggcaaacgga 3241 aacggaaatg ggaatggtaa ctgcattgca ttaaaaccgg aaacggaaac tgagccacag 3301 ccgaacgaaa gagagcagga gcaggacgaa gaggacgacc tgggactgcc ggcggtggcc 3361 tcctcctcct gcgagaccct ggaggcctgc gacgcggcca tcaagctgaa tctccaccag 3421 gattccgccc tggaggcgcc cagcaaacca cttccaccgc tgcccaagaa gccatcgaat 3481 agcgctggcc aaacgaatgg cctgcatcat gcgcagccgt atcatccgcc cggaacgccc 3541 acgctgatgc acaagcgact ggaccactac caccagcagc aggcgcctcc ggtgcctccg 3601 cactccgcct actaccagca ggcgcccacc cacagccacg cccaccagcc gtcgcccatg 3661 atggagcgca gtgctcgggg tcaccagcag cagcatcatt tagaggacaa cggcacgccc 3721 acgccctcga ggattccctc gctgaggcgc cagcgaagaa cctcgggcag ccagccggtg 3781 cacaacagcc acagcaatct caacctgaac ctgagccacc acaacaacaa taacctgcca 3841 tcgcaccacc agcatctgca ccaccaccca ggtcaccctg gtcatccgaa tggcctggtc 3901 gggataccca ttgtgccggg cagtccgcgg gtccagagat ctccgatgcc cagcagggcg 3961 atgatcaaga ggacgcgact gggcagccac acggacaaca tctcctcggg cagcctgaac 4021 agtattgagg tgtgattgag gatgattgga gtatcaagag catcggaagc gaaaacagtt 4081 cccctacaga caaacagaca gcttcaacta ggcttaatca accgaaaatc gacgtgtatt 4141 attatgctta tccatagaaa cgggccggca gagcagtcga atgcactcga atactagttt 4201 ttaagcagtc gataaaaatt tggatagatg aagtcttgag ctagaaccaa aaattgtact 4261 aaatttgaag atttcatttc atttgctaag aaaaataatg gaagcttaga cgttgaacgc 4321 taaagctgct tgattttgat ttgtttaaaa atttcctatt caatttgatt ggaatgagaa 4381 gaagaagaat tattaataat atactttttt tcctgtttct gccggccaga tagtcagtag 4441 aattattaat ttgtattttt tttttaccga ttgattagtg catcccccag gggtcccaaa 4501 ttgcaactcg actaagccct gtagcatagt gttatttatt tattacagtg taagcgtcac 4561 cgactcgaat tgattagttc aatcaggata agcactctaa ctagcagcct aattagctcg 4621 taaggcaaac caactatcta gcattaaagt aagacacttt aaaatgtgac taatatcccg 4681 acattgtagc gtaaaggaaa agcatcctaa actattttta agttcataga cagctgagtt 4741 ctaaacgtat ttttgccaat tttgaaatta aaaa