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LOCUS XM_070218945 2247 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_070218945 VERSION XM_070218945.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2247 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2247 /gene="XRCC1" /note="DNA repair protein XRCC1; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108058197" CDS 217..2025 /gene="XRCC1" /codon_start=1 /product="DNA repair protein XRCC1 isoform X2" /protein_id="XP_070075046.1" /db_xref="GeneID:108058197" /translation="MPIAVFKSVREVHGAANLLKESAGRKWRIRSPGEKSAYVILEFE DPQQITGIDIGNEHAAFVEVLVSRTGCQADDFRELLLSSSFMTPIESKNSSNPNRVRC FSGSALAESVLPEKWKLLKIVCTQPFNRHVQYGLSFVKVHVMATPAAAPPKVKSLLPQ GIMQFGAFKLREESPDSETDNQVNRFQRWKKETTAIQSTAAAIRDAGSTALRRLSTGK VAVSSLAASPAPSPVSGSPAPSDAKPLDRNRASLLFGDDDDDENEAADEGNAKKQRLS KHLEADKDRRRLEQEKERESKKNKSSRHSLDKSTSREEKSSAKEHRSSSKEERSKERS HSKEEKSVRTGDKCTSKHPDSSKAKESPRPSAQKRHSSPTAGAAAATPAKKQKVKDTP IQYRPFNQLLKGVLLVISGIQNPDRADLRSKAIALGAKYKADWEPGCTHLICAFKNTP KYNQVRGKGKIVTRSWIEKCYSLKKYLPWRRYALDTNDFGQPESDEEVCDEAMKPSSR RESSEDDVEMLQDNRVKTTYDAEVPEDRKKVDIRQDASSGIDTEDELERVKQENNARK TKPKTPTKTKSSDVYDASTDEEEYLVLKKKQITSVD" misc_feature 217..639 /gene="XRCC1" /note="XRCC1 N terminal domain; Region: XRCC1_N; pfam01834" /db_xref="CDD:460356" misc_feature <1027..1374 /gene="XRCC1" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature 1426..1662 /gene="XRCC1" /note="First (central) BRCT domain in X-ray repair cross-complementing protein 1 (XRCC1) and similar proteins; Region: BRCT_XRCC1_rpt1; cd17725" /db_xref="CDD:349357" polyA_site 2247 /gene="XRCC1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tggcgcagtg ttttattttt aaaatattcg tcaaaacaaa aacataactt cctgtttaca 61 tcggtaaaac caggaaaata gcttagctca gataagccaa ttgccttggc aatttcccag 121 ccaaaagatc acagatcagt gtgttaaaac tgcgtgttta atcaataagt tggcccaagg 181 aatttcccgc caaattagcg gcgtctgaac ttcgcaatgc ccattgcggt ttttaagtcc 241 gtgcgcgagg tgcacggggc cgcgaatctg ctgaaggaga gcgccggcag gaagtggcgc 301 atccggtcgc ccggcgagaa gtccgcctac gtgatcctgg agttcgagga tccgcagcag 361 atcacgggca ttgacattgg caacgagcac gccgccttcg tcgaggtcct ggtcagccgg 421 acgggctgcc aggcggacga cttccgggag ctcctgctgt ccagctcctt catgacgccc 481 atcgagagca agaactcgag caacccgaac cgggtgcgct gcttcagcgg ctccgccttg 541 gcggagagcg tcctgccgga gaagtggaag ctgctgaaga tcgtgtgcac gcagcccttc 601 aatcgccacg tccaatacgg cctgtccttc gtcaaggtcc atgtgatggc tacgccggca 661 gcagctccgc cgaaggtcaa atccctgctg ccgcagggca tcatgcagtt tggggccttc 721 aagctgcgcg aggaatcccc cgactcggag acggacaacc aggtcaaccg atttcagcgc 781 tggaagaagg aaacaactgc gatccaatcc acagcggctg ccattcggga tgcgggctcc 841 acagccctgc gaagattgag cactggcaag gttgccgttt ccagcctggc tgcatcgcct 901 gctccatcgc ctgtttcagg atctcctgct ccttcggatg ccaagcccct ggatcgcaat 961 cgagcctccc tgctgtttgg cgacgatgat gacgatgaga acgaggctgc cgacgagggg 1021 aatgccaaga agcagcggct gagcaagcat ctggaggcgg acaaggatcg tcggcgattg 1081 gagcaggaaa aggagaggga gagcaagaag aacaagtcca gcaggcattc cttggacaag 1141 tccaccagtc gagaggagaa atcttcggcg aaagaacaca ggtcctcctc caaagaggaa 1201 agatcaaagg aaaggtccca ttcaaaagag gagaaatcgg tcaggacggg ggataaatgt 1261 acttctaagc atcctgattc ctcgaaggcc aaggagagtc cacgtccgtc tgcacaaaag 1321 cgtcattcgt cgcccaccgc aggcgctgct gctgccacac ccgcgaagaa acagaaggtc 1381 aaggacacac caatccagta tcgtcccttt aatcagttgc taaagggcgt actgctggtc 1441 atcagcggca tacagaatcc cgatcgtgcc gatttgcgtt cgaaggccat cgctttgggt 1501 gccaagtata aagccgattg ggagccggga tgtacgcatc tcatatgcgc cttcaagaac 1561 actcccaaat acaatcaagt gaggggcaag ggaaagattg tgacacgcag ctggatcgag 1621 aaatgctata gtctgaagaa gtatctgccc tggcgacgat acgccctgga taccaacgat 1681 ttcgggcagc cggagagcga tgaggaggtg tgcgacgagg cgatgaagcc cagttcgcga 1741 cgcgagtcca gcgaggatga tgtagaaatg ctgcaggaca accgggtgaa gactacctac 1801 gatgctgagg ttccagagga tcggaaaaaa gtggatatac gtcaagatgc ctcgtcgggc 1861 attgatacgg aggatgaatt ggagcgcgtg aagcaagaga acaacgccag gaagaccaaa 1921 cctaagactc cgacaaagac caagtcgagt gatgtttacg atgctagcac agatgaagag 1981 gaatatctgg tgctgaaaaa gaagcagata acctctgtcg attgagttct atttgtaatc 2041 tcatatcttt cgtatacctc tatatgttta aattgtatgt aagtctcgaa ttcttgggtt 2101 ctgtagaact gtttcattac ttaaatatct taagaaaatc gacgagttca aaatgtgttt 2161 gttataacat ccttaaaaga ttgaagacat tttttttgtt tcggcttgga ccgctttcaa 2221 taaaacttac aaaaaaataa cgttaaa