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LOCUS XM_070218944 3111 bp mRNA linear INV 09-DEC-2024 (LOC108068625), transcript variant X3, mRNA. ACCESSION XM_070218944 VERSION XM_070218944.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3111 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3111 /gene="LOC108068625" /note="zinc finger protein 391; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108068625" CDS 503..2041 /gene="LOC108068625" /codon_start=1 /product="zinc finger protein 391 isoform X1" /protein_id="XP_070075045.1" /db_xref="GeneID:108068625" /translation="MDTICRLCFQTATLFQVPGYSIPTCVRCSEQLTNNSNFHQSAAA AAAVAASASAAVAASAAAAATSSSTASSSDSDAIAQQHQNPQQQHPNSQQQQQQQQMQ SSSSSENLQSQDDSEDVDLIFNEEGSCPLCNKTFSRKSSLMTHIRNHSAERKFVCTYC HKGFTQAANLRNHERIHTNDRPYQCVDCGKTFTQITNLNNHRRLHTGERPFVCNEPEC GRSFAQVTNLNNHMKSHHKVQQYCCNVCNKKFTQVTSLNQHLQAHAGVTGYYCPRCPE KNFKLQSQLHTHMKTHGLAFPYECDKCDEKFLQQAHLDQHLKMHDEFKFKCDICPSSF NQESLLKKHVQRHVEGRYLSCPVANCAESFAVRQHLSKHLLTNHAHHELPPPKRSKKT GTLQTSQPLAMIGQPLSLQHTTGQRGRPPKNKNKATALAATAIKIEINEPLHSQHISS VSGLSIQQQINQHMQQQAAQQQAQQQQQQQQAQQQQQQQAAQQQLLHLPMGQAVKARF IPTK" misc_feature 887..949 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 971..1033 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(986..988,992..994,998..1000,1004..1009,1016..1021, 1028..1030,1070..1072,1076..1078,1088..1093,1100..1105, 1112..1114,1160..1162,1166..1168,1172..1174,1178..1183, 1190..1195,1202..1204) /gene="LOC108068625" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1007..1084 /gene="LOC108068625" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 1055..1117 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1139..1207 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1154..>1291 /gene="LOC108068625" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 1154..1210 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature order(1160..1162,1178..1180,1199..1201,1205..1207, 1226..1228,1247..1249) /gene="LOC108068625" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 1229..1291 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 1229..1291 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1244..1246,1250..1252,1256..1258,1262..1267, 1274..1279,1286..1288,1331..1333,1337..1339,1349..1354, 1361..1366,1373..1375,1415..1417,1421..1423,1427..1429, 1433..1438,1445..1450,1457..1459) /gene="LOC108068625" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1313..1378 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1400..1462 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1481..1543 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1565..1630 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 3111 /gene="LOC108068625" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcacacagcg caacaataac aaaaaaaaaa aaagacgacg gacacaactt cgtcgtgaat 61 tgtaaaatac aaaaaaaaac gcactagttt gttttttttc acgtgtaact acgccaaaaa 121 aaagggcaaa ggaattaagc agcaaaaaaa agaagaaaat cggcgcagca acaacaacaa 181 gagcagagag ccgcatatat tgatcccttc aatcaagagg caaacacaaa aagaacttga 241 attgtaaaaa aaccgcaaca cttgcatagt ttttacaaat taaaaaaaaa caaaaaaaaa 301 acgaacaaaa taagaggcaa gaaggcaaaa aaaaaaagaa ggagctgaat gctaaccggt 361 aaagatagcg gtaaattgcg agggagaagg acaagaacaa caacaacgac tgcggagggg 421 gcgaggagca acaacaaagt gcatatattc ttccttctcc cccacctcct ctccatcatc 481 ttcttcccga tttactgcta taatggacac catctgtaga ttgtgcttcc aaacggcaac 541 gttattccaa gtgcccggct atagcatacc cacgtgcgtc cgctgctcgg agcagttgac 601 aaataattcc aacttccatc agtcggcggc agccgctgcc gccgtcgctg cctcggcctc 661 tgccgcagtc gccgcctccg cagcagccgc ggccacctcc tcatcgacgg cctcctccag 721 cgacagcgac gccatcgcgc agcagcacca gaacccgcag cagcagcatc caaactcgca 781 acagcagcag cagcaacagc aaatgcaatc atccagttct tccgagaacc tacagtcgca 841 ggacgactcc gaagacgtgg atctgatatt caacgaggag ggctcctgcc cactatgcaa 901 caaaactttc tcgcgcaaat cctcgctcat gacgcacata cgaaatcact cggcggagcg 961 taagtttgtg tgcacctact gccacaaagg cttcacgcag gcggccaact tgcggaacca 1021 cgaacgcatc cacacgaacg atcggccata tcagtgcgtg gactgcggaa agaccttcac 1081 gcaaatcacc aatctgaaca atcaccgcag gctccacact ggagaacggc ccttcgtctg 1141 caatgagccc gagtgcggtc gcagtttcgc ccaggtgacg aacctgaaca accacatgaa 1201 gtcgcaccac aaggtgcagc agtactgctg caacgtgtgc aacaagaagt tcacgcaggt 1261 gacctcgctg aaccagcacc tgcaggcgca cgccggggtc accggctact actgtccgcg 1321 gtgtccggag aagaacttca agctgcagtc gcagctgcac acgcacatga agacccacgg 1381 cctggccttt ccgtacgagt gcgacaagtg cgacgagaag ttcctgcagc aggcacacct 1441 cgaccagcac ctcaagatgc acgacgagtt caagttcaag tgcgacatct gcccgagcag 1501 ctttaaccag gagtcgctgc tgaagaagca cgtgcagcgg cacgtcgagg gccgctacct 1561 ctcctgtccg gtggccaact gcgccgagtc ctttgcggtg cgccagcacc tgtccaagca 1621 cctgctcacc aaccatgccc accacgagtt gccgccgccg aagcgctcca agaagacggg 1681 cactctgcag acgtcgcagc cgctggcgat gatcggccag ccgttgtccc tgcaacacac 1741 gacggggcag cgtgggcgtc cgccgaagaa caagaacaag gcgacagcgc tggccgccac 1801 ggccatcaag atcgagatca acgaaccgct ccacagccag catatcagca gtgtcagtgg 1861 cctgtccatc cagcagcaga tcaaccagca catgcagcag caggcggccc agcagcaggc 1921 gcaacagcag cagcagcagc aacaggcgca acagcaacag cagcagcagg cggcgcaaca 1981 gcaactgctg cacctgccga tgggacaggc ggtcaaggcg cgcttcatac ccactaagta 2041 ggttagttaa ggatggaaag gtctctctta gcttaagccc ccaacgatca gctgctaaag 2101 tcccctgatt agcatagcca tagccaaaaa gtagcatcac atccaagaaa caaacacaca 2161 ctcgcacaca caaaatacca tgaaatatga tattgcggat gcttctgaaa tgcctagaga 2221 tctctgaaat ggaaaattgt aaattagttt tattttactt gcgaatttct aggttgtgtt 2281 gtttttccaa ctgtttgtaa agatgaaatt tcatatgtac cgaaggtttt tcaaggccaa 2341 caattatttt tccccattaa aagtgtttat aaatgcaagt cattcaaaaa gaaaaaaaag 2401 tatgattttg aataggttgt tttaattttt tattgacttt ttcagtacag ttttttcagt 2461 ttccctttta caaacacttt gaaaaataac atgacttgaa aatttgaaac gcaatattac 2521 ttttgtattg aattattcaa acgacacagc aaaatcagtt ttgagatcag cgtggagatt 2581 tctgaagcat cccgaattta gagtcggcgg caagctgctg gttcagtttg gtgtctgtct 2641 ccattttccg gttctaaatt taccagccaa agcaatagac aaaccaaatg cccccggaat 2701 aaattgaaag taaaccaaac cgctatgtat aacatctaga aagaaaaacg cagcaccaga 2761 tggacagaca aaaacacaaa cggacttaaa attatgcaca taaacacaca catctttata 2821 tacatatata ttatatatac atgagatcag gttgagaaat ctgcaactta aatcgaatta 2881 aaattttaat gtaatgcaaa ggcacagcga aacagaaaat aaaatgttga aaaaaatccg 2941 aaagcaaata caaattaact acgattaaaa ttacgcatag agaaaggcaa caaaaataat 3001 tcgattaaat ttggtatgta tttatgttag gcattagctt aagtgttttt attttttttt 3061 aataaatcat tacaaaaaaa aaggaaccta aagaagggaa gcaagttata a