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LOCUS XM_070218943 3157 bp mRNA linear INV 09-DEC-2024 (LOC108068625), transcript variant X2, mRNA. ACCESSION XM_070218943 VERSION XM_070218943.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3157 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3157 /gene="LOC108068625" /note="zinc finger protein 391; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108068625" CDS 549..2087 /gene="LOC108068625" /codon_start=1 /product="zinc finger protein 391 isoform X1" /protein_id="XP_070075044.1" /db_xref="GeneID:108068625" /translation="MDTICRLCFQTATLFQVPGYSIPTCVRCSEQLTNNSNFHQSAAA AAAVAASASAAVAASAAAAATSSSTASSSDSDAIAQQHQNPQQQHPNSQQQQQQQQMQ SSSSSENLQSQDDSEDVDLIFNEEGSCPLCNKTFSRKSSLMTHIRNHSAERKFVCTYC HKGFTQAANLRNHERIHTNDRPYQCVDCGKTFTQITNLNNHRRLHTGERPFVCNEPEC GRSFAQVTNLNNHMKSHHKVQQYCCNVCNKKFTQVTSLNQHLQAHAGVTGYYCPRCPE KNFKLQSQLHTHMKTHGLAFPYECDKCDEKFLQQAHLDQHLKMHDEFKFKCDICPSSF NQESLLKKHVQRHVEGRYLSCPVANCAESFAVRQHLSKHLLTNHAHHELPPPKRSKKT GTLQTSQPLAMIGQPLSLQHTTGQRGRPPKNKNKATALAATAIKIEINEPLHSQHISS VSGLSIQQQINQHMQQQAAQQQAQQQQQQQQAQQQQQQQAAQQQLLHLPMGQAVKARF IPTK" misc_feature 933..995 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1017..1079 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1032..1034,1038..1040,1044..1046,1050..1055, 1062..1067,1074..1076,1116..1118,1122..1124,1134..1139, 1146..1151,1158..1160,1206..1208,1212..1214,1218..1220, 1224..1229,1236..1241,1248..1250) /gene="LOC108068625" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1053..1130 /gene="LOC108068625" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 1101..1163 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1185..1253 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1200..>1337 /gene="LOC108068625" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 1200..1256 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature order(1206..1208,1224..1226,1245..1247,1251..1253, 1272..1274,1293..1295) /gene="LOC108068625" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 1275..1337 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 1275..1337 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1290..1292,1296..1298,1302..1304,1308..1313, 1320..1325,1332..1334,1377..1379,1383..1385,1395..1400, 1407..1412,1419..1421,1461..1463,1467..1469,1473..1475, 1479..1484,1491..1496,1503..1505) /gene="LOC108068625" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1359..1424 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1446..1508 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1527..1589 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1611..1676 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 3157 /gene="LOC108068625" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcacacagcg caacaataac aaaaaaaaaa aaagacgacg gacacaactt cgtcgtgaat 61 tgtaaaatac aaaaaaaaac gcactagttt gttttttttc acgtgtaact acgccaaaaa 121 aaagggcaaa ggaattaagc agcaaaaaaa agaagaaaat cggcgcagca acaacaacaa 181 gagcagagag ccgcatatat gtgcgtgtgt gcaagtgcaa ggcaaacata aacaacgcga 241 gtgtgttgat cccttcaatc aagaggcaaa cacaaaaaga acttgaattg taaaaaaacc 301 gcaacacttg catagttttt acaaattaaa aaaaaacaaa aaaaaaacga acaaaataag 361 aggcaagaag gcaaaaaaaa aaagaaggag ctgaatgcta accggtaaag atagcggtaa 421 attgcgaggg agaaggacaa gaacaacaac aacgactgcg gagggggcga ggagcaacaa 481 caaagtgcat atattcttcc ttctccccca cctcctctcc atcatcttct tcccgattta 541 ctgctataat ggacaccatc tgtagattgt gcttccaaac ggcaacgtta ttccaagtgc 601 ccggctatag catacccacg tgcgtccgct gctcggagca gttgacaaat aattccaact 661 tccatcagtc ggcggcagcc gctgccgccg tcgctgcctc ggcctctgcc gcagtcgccg 721 cctccgcagc agccgcggcc acctcctcat cgacggcctc ctccagcgac agcgacgcca 781 tcgcgcagca gcaccagaac ccgcagcagc agcatccaaa ctcgcaacag cagcagcagc 841 aacagcaaat gcaatcatcc agttcttccg agaacctaca gtcgcaggac gactccgaag 901 acgtggatct gatattcaac gaggagggct cctgcccact atgcaacaaa actttctcgc 961 gcaaatcctc gctcatgacg cacatacgaa atcactcggc ggagcgtaag tttgtgtgca 1021 cctactgcca caaaggcttc acgcaggcgg ccaacttgcg gaaccacgaa cgcatccaca 1081 cgaacgatcg gccatatcag tgcgtggact gcggaaagac cttcacgcaa atcaccaatc 1141 tgaacaatca ccgcaggctc cacactggag aacggccctt cgtctgcaat gagcccgagt 1201 gcggtcgcag tttcgcccag gtgacgaacc tgaacaacca catgaagtcg caccacaagg 1261 tgcagcagta ctgctgcaac gtgtgcaaca agaagttcac gcaggtgacc tcgctgaacc 1321 agcacctgca ggcgcacgcc ggggtcaccg gctactactg tccgcggtgt ccggagaaga 1381 acttcaagct gcagtcgcag ctgcacacgc acatgaagac ccacggcctg gcctttccgt 1441 acgagtgcga caagtgcgac gagaagttcc tgcagcaggc acacctcgac cagcacctca 1501 agatgcacga cgagttcaag ttcaagtgcg acatctgccc gagcagcttt aaccaggagt 1561 cgctgctgaa gaagcacgtg cagcggcacg tcgagggccg ctacctctcc tgtccggtgg 1621 ccaactgcgc cgagtccttt gcggtgcgcc agcacctgtc caagcacctg ctcaccaacc 1681 atgcccacca cgagttgccg ccgccgaagc gctccaagaa gacgggcact ctgcagacgt 1741 cgcagccgct ggcgatgatc ggccagccgt tgtccctgca acacacgacg gggcagcgtg 1801 ggcgtccgcc gaagaacaag aacaaggcga cagcgctggc cgccacggcc atcaagatcg 1861 agatcaacga accgctccac agccagcata tcagcagtgt cagtggcctg tccatccagc 1921 agcagatcaa ccagcacatg cagcagcagg cggcccagca gcaggcgcaa cagcagcagc 1981 agcagcaaca ggcgcaacag caacagcagc agcaggcggc gcaacagcaa ctgctgcacc 2041 tgccgatggg acaggcggtc aaggcgcgct tcatacccac taagtaggtt agttaaggat 2101 ggaaaggtct ctcttagctt aagcccccaa cgatcagctg ctaaagtccc ctgattagca 2161 tagccatagc caaaaagtag catcacatcc aagaaacaaa cacacactcg cacacacaaa 2221 ataccatgaa atatgatatt gcggatgctt ctgaaatgcc tagagatctc tgaaatggaa 2281 aattgtaaat tagttttatt ttacttgcga atttctaggt tgtgttgttt ttccaactgt 2341 ttgtaaagat gaaatttcat atgtaccgaa ggtttttcaa ggccaacaat tatttttccc 2401 cattaaaagt gtttataaat gcaagtcatt caaaaagaaa aaaaagtatg attttgaata 2461 ggttgtttta attttttatt gactttttca gtacagtttt ttcagtttcc cttttacaaa 2521 cactttgaaa aataacatga cttgaaaatt tgaaacgcaa tattactttt gtattgaatt 2581 attcaaacga cacagcaaaa tcagttttga gatcagcgtg gagatttctg aagcatcccg 2641 aatttagagt cggcggcaag ctgctggttc agtttggtgt ctgtctccat tttccggttc 2701 taaatttacc agccaaagca atagacaaac caaatgcccc cggaataaat tgaaagtaaa 2761 ccaaaccgct atgtataaca tctagaaaga aaaacgcagc accagatgga cagacaaaaa 2821 cacaaacgga cttaaaatta tgcacataaa cacacacatc tttatataca tatatattat 2881 atatacatga gatcaggttg agaaatctgc aacttaaatc gaattaaaat tttaatgtaa 2941 tgcaaaggca cagcgaaaca gaaaataaaa tgttgaaaaa aatccgaaag caaatacaaa 3001 ttaactacga ttaaaattac gcatagagaa aggcaacaaa aataattcga ttaaatttgg 3061 tatgtattta tgttaggcat tagcttaagt gtttttattt ttttttaata aatcattaca 3121 aaaaaaaagg aacctaaaga agggaagcaa gttataa