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PREDICTED: Drosophila takahashii eukaryotic translation initiation


LOCUS       XM_070218940            3758 bp    mRNA    linear   INV 09-DEC-2024
            factor 4 gamma (LOC108068597), mRNA.
ACCESSION   XM_070218940
VERSION     XM_070218940.1
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3758
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..3758
                     /gene="LOC108068597"
                     /note="eukaryotic translation initiation factor 4 gamma;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein"
                     /db_xref="GeneID:108068597"
     CDS             116..3553
                     /gene="LOC108068597"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 4
                     gamma"
                     /protein_id="XP_070075041.1"
                     /db_xref="GeneID:108068597"
                     /translation="MAYHQNPNGNHYMQLNPNQVVYGNGQRYQPCVQNFGTEPSYPNF
                     PPNYPLNCPLNYPPNYQHNPQPNPQPNYPLNHQYNLQTNNPPNYPLNYQHNPETHYPQ
                     YYSSNAYPPNSPQPPNPYSSRPPIRREIIHFGNTPGYYWHGCWYNCGLPRPRTPAPQQ
                     VVQQPESYVMGMQPPVAPPPPPQPIYQIREPVAPPQPPPQSMAHDPRLQGVYMMTGPP
                     QMPRPQLPTTQQVPLSYCVMQPQPGPRKLPPELQAPQVVEIVLGPSIDVTRTDDKLIL
                     DFRGLHPPRPVPATPNQVNESEQISEDIGFQPSPPAESKSPLPSGSSNTMPSTNESAE
                     DGSQNSAVNAEKQLEIIQCLNNVAQDVVLIAEHVEQSVHNPAENLDMVEQKVIQGHPN
                     MVENPRFIPAQCLDLPTSQPENEPIPVPVPNLVAEQQETEQSSNATSNEVKKPNESET
                     FYEDLSVNKATELEKQFEVTQVIQENFDLKSHDIADIEKGMDQLHIADPLPDLVTQAG
                     ETPVQNERIDDSKMTCTLPITIPPAKSIGSSLLKVIKQENITSNILQPIKKSDRNISV
                     THKKKLPVPRKPQHKSIGASLLQVIEKENITSTIQKPDVTSNTNISEPQKKNLSVPQK
                     PLNQWPPLETRPRTRLAPIKKPLAPGIKLQKTGSVNSLRSTRSSFGSRKIFKSVEQKV
                     PPAVELKINVPEAKTAPISPAKRIEGNIQQGVRKNSAKPKVNENGPQLAQADKEKIIR
                     DNSTKLRVPQTESQSTKSSSPDKKPLVNTKNTTIHTSQVKKSPEIKSPPTKKPMVILE
                     KREAPKPVTDSLVTISNMFELLLDEPETQLSEVDDDESFQPEAQKTGKLVPQKAVNSK
                     KEKRRLKKISTAQKKLELSEKKAAKEALRAKKAADKAKDLESSQTFEKCLASIKKNEV
                     AYWQLTDLMRKSSMKPIGPPPPPGAPQPPPPAPEPPAPAGVPERKRKSPGLSKFLSAV
                     NVAALKQVVAKRRELFEKRKPASNDLDINPTLRLRPLIPAGDAKEPTQSTPSVVPPPK
                     VMKYESPLPMSFKPMPKKTIDPVPNIIELPNSAAPENRWLKQNKSINELFLIPQQVPA
                     SYAPLSPVYEVPPRSDLKDRRSLDRKEWRQKDKVTRRYFPFITFEELKENRIRILGK"
ORIGIN      
        1 tcgtttgaca acgtggccac gccaatcgaa tggcacctcg cttccttttc cccatcagcg
       61 gcgcttgcgc aaagttcact accggagaga gagatcccga aaatctgcga aaatcatggc
      121 ttatcatcag aacccgaacg gaaaccatta catgcagctt aatccaaacc aagtggtgta
      181 cggaaatggg cagcgttacc agccgtgcgt gcagaatttt ggaacggagc ctagctatcc
      241 gaacttccca ccaaactatc cactgaactg tccactaaac tatcccccga actatcaaca
      301 taaccctcaa cccaaccccc aaccaaacta cccactgaac catcaatata acctccaaac
      361 gaacaaccca ccaaactacc cactaaacta ccaacataac cccgaaacgc actacccaca
      421 atactactcg tcgaacgcct atccgcctaa ctcgccccaa ccaccgaatc cgtactcttc
      481 acgcccaccg attcgccggg agatcataca tttcgggaac acgcccggct attactggca
      541 cggctgttgg tacaactgcg gattgcctcg tcccaggacc cctgctcccc agcaggtcgt
      601 gcaacaaccg gaatcctatg taatggggat gcaaccgccg gtggcgccac caccaccacc
      661 tcaacctatc tatcagatta gagagccagt agcgccacct cagccaccgc ctcaatccat
      721 ggcccacgat ccccgactac agggtgtcta catgatgaca gggccaccgc agatgccacg
      781 cccacaactt ccaaccacac agcaggtgcc actcagctac tgtgtcatgc agccccagcc
      841 tggtccacga aaacttcctc ctgaactcca ggcacctcag gtggtggaga tcgtgttggg
      901 accctcaatt gacgtcaccc gaaccgacga taagttaatc ctggactttc gagggctgca
      961 tcctccccgt ccagtgccag caacgcctaa tcaagtcaac gaatcggaac agatatcgga
     1021 agatatcggg tttcaaccta gtccacctgc cgagtctaaa tcgcctcttc catcaggatc
     1081 tagtaacaca atgccttcta caaatgaatc agctgaagat ggatctcaaa atagtgcagt
     1141 aaatgctgaa aaacaactgg aaattattca atgtctcaat aatgtagccc aggatgtggt
     1201 attaatcgct gagcatgttg agcagagtgt tcataacccg gcagaaaact tggacatggt
     1261 agagcaaaaa gttatccaag gccatccgaa tatggttgag aatcccagat ttattcctgc
     1321 tcagtgttta gatttaccta cgagccagcc agaaaatgag ccaattccgg ttccggttcc
     1381 gaacttggtc gcagaacagc aggaaaccga acaatcttcc aatgcgacct caaacgaagt
     1441 gaagaagccg aacgaatctg aaacttttta cgaagatctt agcgtaaata aagctaccga
     1501 attggagaag caattcgaag tcactcaggt aatacaagaa aactttgatc tcaaatccca
     1561 tgacattgcg gacattgaga agggaatgga tcagttgcat atcgcagatc cactgcccga
     1621 tctggtaact caggcaggag aaactcctgt ccaaaatgaa agaatcgatg attcgaaaat
     1681 gacttgtaca ctgccgataa cgatcccacc ggccaagtcc atcggatcat cccttttgaa
     1741 agttattaag caggaaaata tcactagcaa catattacaa cccattaaaa aatcggatcg
     1801 gaatatttct gtaacgcaca agaaaaagct tcctgtgcct cggaaaccac agcacaagtc
     1861 catcggtgca tcccttttac aagttatcga aaaggaaaac atcaccagca ccattcaaaa
     1921 accagacgtg acctcaaata caaatatttc tgaaccgcaa aagaaaaacc tttctgtgcc
     1981 tcagaaaccc ttgaatcagt ggccaccttt ggagacacgt ccacgaacta gacttgcgcc
     2041 aattaagaaa cctttggctc cggggatcaa gctacaaaag acaggatctg taaattcgct
     2101 acggtcaacg cgcagttcct ttgggagccg gaagatcttc aaatctgtgg agcaaaaagt
     2161 accaccggca gtcgagctaa aaatcaatgt accagaagct aaaacggccc caatttcgcc
     2221 agcaaagagg atcgaaggaa atattcaaca gggtgtaagg aaaaactcgg caaaacccaa
     2281 ggtaaatgaa aatggacctc aattagcaca ggctgataag gaaaaaatca taagggataa
     2341 ctcgacaaag ctcagagtgc ctcaaactga gtcacaatca acgaaaagct cttcgcctga
     2401 taaaaaaccc ttggtcaata ccaaaaatac tactattcat acctcgcagg tcaaaaagag
     2461 tccggaaatt aaatcaccgc ccacgaaaaa gccaatggtg atattggaga agagagaagc
     2521 cccaaagcca gtgacagatt ccttggtcac aatatcaaat atgttcgagc tgctccttga
     2581 tgagccggaa acgcagttat cagaagtcga tgatgacgaa agttttcaac cagaggccca
     2641 aaaaactggt aaactggttc cgcaaaaggc ggttaattcc aaaaaggaaa agaggcgcct
     2701 gaagaaaatt agtacggccc aaaagaagct ggaattatct gagaaaaagg cagccaaaga
     2761 agccttaagg gctaagaaag cagcagataa ggccaaagac ttggagtcaa gccaaacatt
     2821 cgaaaaatgc ttagcgagca taaagaaaaa tgaggtggcc tattggcagc taaccgatct
     2881 catgaggaag tcctcgatga aacccattgg acccccgcct ccaccaggag caccacagcc
     2941 tccaccgcct gcacctgaac cacctgcacc tgctggagtt ccggagagga agagaaagag
     3001 ccccgggcta agtaagttcc tcagtgcggt taatgtggcc gcgttgaaac aagtggttgc
     3061 aaagcgaagg gaactgtttg agaagagaaa gccggctagc aatgatttgg atattaatcc
     3121 aacccttcga ctgcgtcctt tgattccagc tggggatgcc aaggaaccaa ctcaaagtac
     3181 tccatcggtg gttcctccac caaaagtgat gaaatacgaa agccctttgc caatgtcgtt
     3241 caaacccatg ccaaaaaaaa ctattgatcc cgttccaaat ataattgaac ttccgaattc
     3301 tgcagctcca gagaatagat ggttaaaaca aaataagagc atcaacgaac tttttctcat
     3361 acctcaacaa gttccagcct catatgcacc cctttcaccg gtatatgaag tgccaccgcg
     3421 atctgatttg aaagaccgcc gatccctgga tcgaaaagag tggcgacaga aggataaagt
     3481 aacaaggagg tattttccct tcataacttt cgaggaacta aaagaaaatc gcatccgaat
     3541 tttaggcaaa taattaaatt gcaaaggtta attgacaatt tatgtgaatc attctggaat
     3601 aattctggta tgatatggtt ttcatttatg tcatggttta ggtgatactt taaaactagt
     3661 cttccattat tctgactcat aatcataata gctatctaac attatttcat ggccttatat
     3721 aataacactt gtaaaatatc tatgtctcca ctaataaa