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LOCUS XM_070218876 4382 bp mRNA linear INV 09-DEC-2024 transcript variant X15, mRNA. ACCESSION XM_070218876 VERSION XM_070218876.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4382 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4382 /gene="Appl" /note="amyloid-beta-like protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058164" CDS 350..3070 /gene="Appl" /codon_start=1 /product="amyloid-beta-like protein isoform X13" /protein_id="XP_070074977.1" /db_xref="GeneID:108058164" /translation="MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQ IYQPQYLSEEGRWMTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKI GGWCRQGALNAAKCKGSHRWIKPFRCLGPFQSDALLVPEGCLFDHIHNASRCWPFVRW NQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKHFKTDEIHVKKTDLPVMPP AQITSANDELMVNDEDDSNDSNYSKDANDDELDDEDDLMGDDEEDEMVADEAAAGGGS PSTGSTGDANSGSLDDINAEYDSGEEGDNYEEDGAGSEGEAEGETSWDQSGGSKVVTL KSGASASVPSSGPVSVSASSEKTPAKSSDLVTSTPQLSAAAAAAAAAAAASVNSGNSG VGSSNGGGGAPPSTAQPTSDPYFTHFDPHYEHQSYKRLEESHREKVTRVMKDWSDLEE KYQDMRLADPKAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHINQRK REAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPGGLEAA ASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSKDDIPGSSLG MSEEAEAGILDKYRIEIERKVAEKERLRLAEKQRKEQRAAEREKLREEKLRMEAKKVD DMLKSQAAEQQQQSQQQQQQSNAQSSTQSQAQQQQQEKSLSSKELGLDGGLVTAANLN LDTTKSEKELSDTEYAEATVSSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEAEPQVQ HFMTHDLGHRESSFSLRREFAQHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWR TSRSPHAQGFIEVDQNVTTHHPIVQEEKIVPNMQINGYENPTYKYFEVKE" misc_feature 425..943 /gene="Appl" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature <1013..>1432 /gene="Appl" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 1556..2122 /gene="Appl" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2276..>2392 /gene="Appl" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 2909..3058 /gene="Appl" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" polyA_site 4382 /gene="Appl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgcgacttt cggactgtca ggacattcga tttggaggca acgagtccgc cgagcagcca 61 gcaccactcg cagtcgtttg tgagcgttcg cagcgccagc aaagtgttaa acgaacaagc 121 caacaacaaa ccaaatacaa gttaaccaga aacagagaat ctgaaaacga aatccaaagc 181 taaattgcaa cccagacgag ccgcaaaaag cagcggtaag ttcagagatt cccgtctgag 241 attcgctgag aagcagagca gacaggagcc gagtttggag agacaggaca caaaggagtc 301 ggagtcagag tcacagccaa ggacaaggat ctcaaaagga gtgcgaacaa tgtgcgccgc 361 gctgcgtcgt aatttgttgc tgcggagcct ctgggtcgtc ctggccattg gcaccgctca 421 ggttcaggcc gcctcgccac gatgggagcc ccagatagcc gttctctgcg aggccggaca 481 aatctatcaa ccgcaatatc tttccgagga gggacgctgg atgacggacc tcagcaagaa 541 gacaaccggc gccacatgtt tgcgtgataa aatggatttg cttgattact gcaagaaggc 601 ctatcccaat cgagacatta cgaacattgt cgagtcatcc cactaccaga agatcggcgg 661 ctggtgtcgt cagggtgctc taaatgcggc caagtgcaag ggctcccacc gctggatcaa 721 gccattccgc tgtctcggac cattccaatc ggacgccctg ctggttcccg agggctgcct 781 cttcgatcac atccacaacg cctcacgctg ctggcccttc gtgaggtgga accaaaccgg 841 agcggccgct tgccaggagc gcggaatgca gatgcgcagc ttcgccatgc tcctgccctg 901 cggcatctcg gtcttctccg gcgtggagtt cgtctgctgt cccaagcact tcaagactga 961 tgaaatccat gtgaaaaaga ccgacctgcc ggtgatgcca ccagcccaga tcaccagtgc 1021 caacgacgaa ctgatggtga atgacgagga cgatagcaat gactcgaatt actcaaagga 1081 tgccaatgac gacgagctgg acgatgagga tgatctgatg ggcgatgatg aggaggacga 1141 gatggtggcg gatgaggcag ctgccggggg aggaagtccc agcaccggat cgactggcga 1201 tgcaaatagc ggatctctgg atgatataaa tgcggaatac gatagcggcg aggagggtga 1261 caactacgag gaggatggag ctggttccga gggcgaagcc gagggtgaga cctcctggga 1321 tcagagcgga ggatctaagg tggtgaccct aaagagtggt gcctccgcct cggtgccgtc 1381 tagtggtccg gtttcagttt ctgcctcatc tgaaaagacg cccgcaaaat cctctgattt 1441 ggtcacgagc actcctcagc tttccgccgc cgccgccgca gccgccgcag ctgctgcagc 1501 atctgtgaac tctggaaact cgggagtagg atcttctaac ggaggaggag gagccccacc 1561 atccaccgca cagcccacct cggacccata cttcacccac tttgatccgc actatgagca 1621 ccagagctac aaacgccttg aggaatcgca tcgcgagaag gtcacgcgcg tgatgaagga 1681 ctggtcggat ctggaggaga agtaccagga tatgcgcttg gcggacccca aggcagccca 1741 atcctttaag cagcggatga cggctcgctt ccagacttct gttcaggcac tcgaggaaga 1801 aggcaacgcc gagaagcacc agctggccgc catgcaccag cagcgcgttt tggcccacat 1861 caaccagcgg aagcgggagg ccatgacctg ctacacccag gccctcaccg aacagccccc 1921 gaacgcccac catgttgaga agtgcctgca aaagttgctg cgcgccctgc acaaggaccg 1981 tgcccatgct ctggcccact accgccacct gttgaactct ggaggacccg gtggcctgga 2041 ggcggctgcc tcggagcgac cacgcactct ggagcgcctg atcgacatcg atcgtgctgt 2101 caatcagtcg atgaccatgc tcaagcgcta cccggagcta tcggccaaga ttgcccagct 2161 gatgaacgat tatattttgg cattgcgcag caaggacgac attcccggct cgtcgctggg 2221 catgagcgag gaggcggagg ccggcattct ggacaagtac cgcatcgaga tcgagcgcaa 2281 ggtggccgag aaggagcgac tccggctggc cgaaaagcag cgcaaggagc agcgggccgc 2341 cgagcgggag aaattgcgcg aggagaagct gcgtatggag gccaagaagg tggacgacat 2401 gctcaagtcg caggcggccg aacagcagca gcaatcgcag cagcagcagc agcagtccaa 2461 tgcccagtcg tcgacccaat cgcaggcgca acagcagcag caggagaaga gcctcagcag 2521 caaggagctg ggtctcgatg gcggattggt cacagcggcc aatcttaact tggacaccac 2581 caagagcgag aaggagctgt cggataccga gtacgccgag gcaacagtaa gcagcaccaa 2641 ggtgcagacc gtgctgccaa cggtcgacga tgatgccgtc cagcgggcgg tggaggatgt 2701 ggccgctgcc gttgctcacc aggaggccga gccgcaggtg cagcacttca tgacccacga 2761 tctgggccac cgcgaatcga gcttctcgct gcgtcgcgag ttcgcgcagc atgcgcacgc 2821 ggccaaggag ggccgcaatg tctacttcac gctctccttc gccggcatcg ccctcatggc 2881 ggccgtcttt gtgggcgtgg ccgtggccaa atggcggaca tcgcgctcgc cgcacgccca 2941 gggcttcatt gaggtcgatc agaacgtgac cacacaccat cccatcgtcc aggaggagaa 3001 gatcgtgccc aacatgcaga tcaatgggta cgagaatccg acctacaaat atttcgaagt 3061 gaaagagtaa gcgggacggc aagaggagcg cggctggcta gagcgagagc gagaacgaga 3121 acgccgagcg agcgagaggc acacatcaac agcaaaagca gaagaaacag cagcagcagc 3181 aaccacaatt tcaaaatgaa gaaacttaag cataatatta aaaagcagat gggaagagaa 3241 atgatttttt ttttcgtcaa aaaaggagcg cagttccaat aaggagaaac gaggggtaga 3301 agaagaaaga taaattcaat gaatggtaat atatctatat attaaattaa agcaagcaag 3361 cagaaaggca agaatataaa gcaagcaatt aaatttaagt atttgaatgt ttaacaaaat 3421 gcagtaaaca tcctttctag ctctctatct ctctctctct ctcggtctta ctcaaccact 3481 ctgtcccttt cccacacaca cacataactc attacattcc cactttgtgg ttcttgttgg 3541 gcgccaaata aaaagagagc aaaagaacta atagccaaag aggcaagcga aaatccgtgc 3601 aaaggaaagt cggataaaaa gattgaaagt aaaagcataa agccaaggac aagaatcaca 3661 cacacccaca cacaaaagga aaggaggagc aggcggagga ggtggagaaa gaaaagagag 3721 cagaagaaaa gcaaatgcaa aacaaaagat attcctagta aataaattgt cagcacacag 3781 acacacattc acatacaccg actcactcat agatacagga acagtcacac acacacacac 3841 acaaccacac acgcattcat ggctgcttcg tagcatactt ttgagcgttt cgtggcgttg 3901 aaatgcttgc aagccgatcg caattcttac cgacaaaaaa acttacgcca ttaattagag 3961 ccgcgctaaa agctaaaaga agatgaaagc tgaaacacag atacacacac tcacactgag 4021 acacacatgt gaacctaaga gctacctacg cgtactaatc tctatacgaa catgcatatg 4081 cgcttatgta tatgtctaac tctctctcta aaccacactc acactcacac acacacacga 4141 aaacacccag acaaacgcaa agaaagcaac tgcaaaaacc caacaaatta tatatacaca 4201 tatatatata tatatacaat atatttaaag caaagcaaga agaaatgtcc ataaatgtat 4261 ttatgtatct atacacgagc cacacaaccc aaaaaggtcg aaggtcagcc agctaagggg 4321 agcaggagaa ttacgatgct tggcaggcta tgaaattaat atatgaatca gctacgtaaa 4381 ca