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LOCUS XM_070218875 4391 bp mRNA linear INV 09-DEC-2024 transcript variant X14, mRNA. ACCESSION XM_070218875 VERSION XM_070218875.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4391 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4391 /gene="Appl" /note="amyloid-beta-like protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058164" CDS 350..3079 /gene="Appl" /codon_start=1 /product="amyloid-beta-like protein isoform X12" /protein_id="XP_070074976.1" /db_xref="GeneID:108058164" /translation="MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQ IYQPQYLSEEGRWMTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKI GGWCRQGALNAAKCKGSHRWIKPFRCLGPFQSDALLVPEGCLFDHIHNASRCWPFVRW NQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKHFKTDEIHVKKTDLPVMPP AQITSANDELMVNDEDDSNDSNYSKDANDDELDDEDDLMGDDEEDEMVADEAAAGGGS PSTGSTGDANSGSLDDINAEYDSGEEGDNYEEDGAGSEGEAEGETSWDQSGGSKVVTL KSGASASVPSSGPVSVSASSEKTPAKSSDLVTSTPQLSAAAAAAAAAAAASVNSGNSG VGSSNGGGGAPPSTAQPTSDPYFTHFDPHYEHQSYKVSQKRLEESHREKVTRVMKDWS DLEEKYQDMRLADPKAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHI NQRKREAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPGG LEAAASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSKDDIPG SSLGMSEEAEAGILDKYRIEIERKVAEKERLRLAEKQRKEQRAAEREKLREEKLRMEA KKVDDMLKSQAAEQQQQSQQQQQQSNAQSSTQSQAQQQQQEKSLSSKELGLDGGLVTA ANLNLDTTKSEKELSDTEYAEATVSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEAEP QVQHFMTHDLGHRESSFSLRREFAQHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVA KWRTSRSPHAQGFIEVDQNVTTHHPIVQEEKIVPNMQINGYENPTYKYFEVKE" misc_feature 425..943 /gene="Appl" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature <1013..>1432 /gene="Appl" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 1556..2134 /gene="Appl" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2288..>2404 /gene="Appl" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 2918..3067 /gene="Appl" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" polyA_site 4391 /gene="Appl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgcgacttt cggactgtca ggacattcga tttggaggca acgagtccgc cgagcagcca 61 gcaccactcg cagtcgtttg tgagcgttcg cagcgccagc aaagtgttaa acgaacaagc 121 caacaacaaa ccaaatacaa gttaaccaga aacagagaat ctgaaaacga aatccaaagc 181 taaattgcaa cccagacgag ccgcaaaaag cagcggtaag ttcagagatt cccgtctgag 241 attcgctgag aagcagagca gacaggagcc gagtttggag agacaggaca caaaggagtc 301 ggagtcagag tcacagccaa ggacaaggat ctcaaaagga gtgcgaacaa tgtgcgccgc 361 gctgcgtcgt aatttgttgc tgcggagcct ctgggtcgtc ctggccattg gcaccgctca 421 ggttcaggcc gcctcgccac gatgggagcc ccagatagcc gttctctgcg aggccggaca 481 aatctatcaa ccgcaatatc tttccgagga gggacgctgg atgacggacc tcagcaagaa 541 gacaaccggc gccacatgtt tgcgtgataa aatggatttg cttgattact gcaagaaggc 601 ctatcccaat cgagacatta cgaacattgt cgagtcatcc cactaccaga agatcggcgg 661 ctggtgtcgt cagggtgctc taaatgcggc caagtgcaag ggctcccacc gctggatcaa 721 gccattccgc tgtctcggac cattccaatc ggacgccctg ctggttcccg agggctgcct 781 cttcgatcac atccacaacg cctcacgctg ctggcccttc gtgaggtgga accaaaccgg 841 agcggccgct tgccaggagc gcggaatgca gatgcgcagc ttcgccatgc tcctgccctg 901 cggcatctcg gtcttctccg gcgtggagtt cgtctgctgt cccaagcact tcaagactga 961 tgaaatccat gtgaaaaaga ccgacctgcc ggtgatgcca ccagcccaga tcaccagtgc 1021 caacgacgaa ctgatggtga atgacgagga cgatagcaat gactcgaatt actcaaagga 1081 tgccaatgac gacgagctgg acgatgagga tgatctgatg ggcgatgatg aggaggacga 1141 gatggtggcg gatgaggcag ctgccggggg aggaagtccc agcaccggat cgactggcga 1201 tgcaaatagc ggatctctgg atgatataaa tgcggaatac gatagcggcg aggagggtga 1261 caactacgag gaggatggag ctggttccga gggcgaagcc gagggtgaga cctcctggga 1321 tcagagcgga ggatctaagg tggtgaccct aaagagtggt gcctccgcct cggtgccgtc 1381 tagtggtccg gtttcagttt ctgcctcatc tgaaaagacg cccgcaaaat cctctgattt 1441 ggtcacgagc actcctcagc tttccgccgc cgccgccgca gccgccgcag ctgctgcagc 1501 atctgtgaac tctggaaact cgggagtagg atcttctaac ggaggaggag gagccccacc 1561 atccaccgca cagcccacct cggacccata cttcacccac tttgatccgc actatgagca 1621 ccagagctac aaagtaagtc agaaacgcct tgaggaatcg catcgcgaga aggtcacgcg 1681 cgtgatgaag gactggtcgg atctggagga gaagtaccag gatatgcgct tggcggaccc 1741 caaggcagcc caatccttta agcagcggat gacggctcgc ttccagactt ctgttcaggc 1801 actcgaggaa gaaggcaacg ccgagaagca ccagctggcc gccatgcacc agcagcgcgt 1861 tttggcccac atcaaccagc ggaagcggga ggccatgacc tgctacaccc aggccctcac 1921 cgaacagccc ccgaacgccc accatgttga gaagtgcctg caaaagttgc tgcgcgccct 1981 gcacaaggac cgtgcccatg ctctggccca ctaccgccac ctgttgaact ctggaggacc 2041 cggtggcctg gaggcggctg cctcggagcg accacgcact ctggagcgcc tgatcgacat 2101 cgatcgtgct gtcaatcagt cgatgaccat gctcaagcgc tacccggagc tatcggccaa 2161 gattgcccag ctgatgaacg attatatttt ggcattgcgc agcaaggacg acattcccgg 2221 ctcgtcgctg ggcatgagcg aggaggcgga ggccggcatt ctggacaagt accgcatcga 2281 gatcgagcgc aaggtggccg agaaggagcg actccggctg gccgaaaagc agcgcaagga 2341 gcagcgggcc gccgagcggg agaaattgcg cgaggagaag ctgcgtatgg aggccaagaa 2401 ggtggacgac atgctcaagt cgcaggcggc cgaacagcag cagcaatcgc agcagcagca 2461 gcagcagtcc aatgcccagt cgtcgaccca atcgcaggcg caacagcagc agcaggagaa 2521 gagcctcagc agcaaggagc tgggtctcga tggcggattg gtcacagcgg ccaatcttaa 2581 cttggacacc accaagagcg agaaggagct gtcggatacc gagtacgccg aggcaacagt 2641 aagcaccaag gtgcagaccg tgctgccaac ggtcgacgat gatgccgtcc agcgggcggt 2701 ggaggatgtg gccgctgccg ttgctcacca ggaggccgag ccgcaggtgc agcacttcat 2761 gacccacgat ctgggccacc gcgaatcgag cttctcgctg cgtcgcgagt tcgcgcagca 2821 tgcgcacgcg gccaaggagg gccgcaatgt ctacttcacg ctctccttcg ccggcatcgc 2881 cctcatggcg gccgtctttg tgggcgtggc cgtggccaaa tggcggacat cgcgctcgcc 2941 gcacgcccag ggcttcattg aggtcgatca gaacgtgacc acacaccatc ccatcgtcca 3001 ggaggagaag atcgtgccca acatgcagat caatgggtac gagaatccga cctacaaata 3061 tttcgaagtg aaagagtaag cgggacggca agaggagcgc ggctggctag agcgagagcg 3121 agaacgagaa cgccgagcga gcgagaggca cacatcaaca gcaaaagcag aagaaacagc 3181 agcagcagca accacaattt caaaatgaag aaacttaagc ataatattaa aaagcagatg 3241 ggaagagaaa tgattttttt tttcgtcaaa aaaggagcgc agttccaata aggagaaacg 3301 aggggtagaa gaagaaagat aaattcaatg aatggtaata tatctatata ttaaattaaa 3361 gcaagcaagc agaaaggcaa gaatataaag caagcaatta aatttaagta tttgaatgtt 3421 taacaaaatg cagtaaacat cctttctagc tctctatctc tctctctctc tcggtcttac 3481 tcaaccactc tgtccctttc ccacacacac acataactca ttacattccc actttgtggt 3541 tcttgttggg cgccaaataa aaagagagca aaagaactaa tagccaaaga ggcaagcgaa 3601 aatccgtgca aaggaaagtc ggataaaaag attgaaagta aaagcataaa gccaaggaca 3661 agaatcacac acacccacac acaaaaggaa aggaggagca ggcggaggag gtggagaaag 3721 aaaagagagc agaagaaaag caaatgcaaa acaaaagata ttcctagtaa ataaattgtc 3781 agcacacaga cacacattca catacaccga ctcactcata gatacaggaa cagtcacaca 3841 cacacacaca caaccacaca cgcattcatg gctgcttcgt agcatacttt tgagcgtttc 3901 gtggcgttga aatgcttgca agccgatcgc aattcttacc gacaaaaaaa cttacgccat 3961 taattagagc cgcgctaaaa gctaaaagaa gatgaaagct gaaacacaga tacacacact 4021 cacactgaga cacacatgtg aacctaagag ctacctacgc gtactaatct ctatacgaac 4081 atgcatatgc gcttatgtat atgtctaact ctctctctaa accacactca cactcacaca 4141 cacacacgaa aacacccaga caaacgcaaa gaaagcaact gcaaaaaccc aacaaattat 4201 atatacacat atatatatat atatacaata tatttaaagc aaagcaagaa gaaatgtcca 4261 taaatgtatt tatgtatcta tacacgagcc acacaaccca aaaaggtcga aggtcagcca 4321 gctaagggga gcaggagaat tacgatgctt ggcaggctat gaaattaata tatgaatcag 4381 ctacgtaaac a